Wall clock time and date at job start Wed Apr 1 2020 03:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39904 * 125.75304 * 2 1 4 4 C 1.30364 * 109.14476 * 180.02562 * 3 2 1 5 5 C 1.41369 * 108.16245 * 359.97438 * 4 3 2 6 6 C 1.47013 * 126.48555 * 180.02562 * 5 4 3 7 7 O 1.21655 * 120.00065 * 179.97438 * 6 5 4 8 8 N 1.34772 * 119.99780 * 359.97438 * 6 5 4 9 9 C 1.46511 * 119.99791 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.88357 * 31.11581 * 9 8 6 11 11 C 1.54913 * 111.00019 * 267.19391 * 9 8 6 12 12 N 1.47419 * 104.82828 * 204.91582 * 11 9 8 13 13 C 1.36942 * 125.65055 * 204.10863 * 12 11 9 14 14 H 1.08005 * 119.99254 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31609 * 120.00469 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99727 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47109 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47208 * 119.99662 * 17 15 13 20 20 H 1.48503 * 109.47226 * 239.99848 * 17 15 13 21 21 C 1.47024 * 108.70597 * 24.13100 * 12 11 9 22 22 C 1.54326 * 107.27027 * 358.93753 * 21 12 11 23 23 H 1.08997 * 110.72056 * 219.44836 * 22 21 12 24 24 O 1.42893 * 110.86930 * 96.24448 * 22 21 12 25 25 C 1.34735 * 125.75670 * 179.68666 * 2 1 3 26 26 N 1.38986 * 126.41611 * 359.96995 * 25 2 1 27 27 C 1.36732 * 125.69714 * 134.71435 * 26 25 2 28 28 C 1.34787 * 108.18743 * 179.86536 * 27 26 25 29 29 C 1.41022 * 107.50291 * 0.39003 * 28 27 26 30 30 C 1.34783 * 107.50692 * 359.75761 * 29 28 27 31 31 H 1.09001 * 109.47060 * 90.03153 * 1 2 3 32 32 H 1.09004 * 109.47073 * 210.02642 * 1 2 3 33 33 H 1.09000 * 109.47212 * 330.02724 * 1 2 3 34 34 H 1.07994 * 125.91508 * 180.02562 * 4 3 2 35 35 H 0.97001 * 120.00252 * 359.97438 * 8 6 5 36 36 H 1.09002 * 110.36483 * 323.75512 * 11 9 8 37 37 H 1.08997 * 110.36465 * 86.08271 * 11 9 8 38 38 H 0.97000 * 120.00422 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.88144 * 239.52495 * 21 12 11 40 40 H 1.08997 * 110.01538 * 118.42933 * 21 12 11 41 41 H 0.96701 * 114.00415 * 66.39048 * 24 22 21 42 42 H 1.07996 * 125.90270 * 0.02562 * 27 26 25 43 43 H 1.07998 * 126.24500 * 180.14320 * 28 27 26 44 44 H 1.07997 * 126.24329 * 179.75418 * 29 28 27 45 45 H 1.07996 * 125.90940 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5318 0.7628 -0.0006 5 6 3.5701 -0.6504 -0.0003 6 6 4.7754 -1.4922 -0.0003 7 8 4.6708 -2.7042 0.0004 8 7 5.9961 -0.9211 -0.0009 9 6 7.1973 -1.7600 -0.0014 10 1 7.0163 -2.6973 -0.5275 11 6 7.6937 -2.0197 1.4429 12 7 9.1339 -2.3009 1.3020 13 6 9.8965 -3.0206 2.1827 14 1 9.4462 -3.4371 3.0717 15 6 11.2483 -3.2139 1.9335 16 7 11.7971 -2.7060 0.8504 17 14 12.2886 -4.1951 3.1353 18 1 11.4402 -4.6540 4.2644 19 1 12.8688 -5.3727 2.4411 20 1 13.3839 -3.3382 3.6562 21 6 9.6162 -1.6801 0.0595 22 6 8.4045 -1.0023 -0.6143 23 1 8.4376 -1.1395 -1.6951 24 8 8.3499 0.3870 -0.2844 25 6 2.2524 -1.0934 0.0060 26 7 1.8269 -2.4165 0.0138 27 6 2.3260 -3.4197 -0.7697 28 6 1.6630 -4.5550 -0.4726 29 6 0.7141 -4.2438 0.5231 30 6 0.8351 -2.9308 0.8023 31 1 -0.3633 -0.0006 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5134 34 1 4.3888 1.4198 -0.0003 35 1 6.0795 0.0453 -0.0018 36 1 7.5384 -1.1361 2.0620 37 1 7.1795 -2.8797 1.8718 38 1 12.7418 -2.8408 0.6765 39 1 10.0283 -2.4434 -0.6005 40 1 10.3789 -0.9353 0.2863 41 1 9.0826 0.9058 -0.6438 42 1 3.1167 -3.3202 -1.4986 43 1 1.8259 -5.5249 -0.9187 44 1 0.0175 -4.9320 0.9786 45 1 0.2503 -2.3802 1.5242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083686784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:11 Heat of formation + Delta-G solvation = 98.199843 kcal Electronic energy + Delta-G solvation = -30410.154813 eV Core-core repulsion = 26239.337433 eV Total energy + Delta-G solvation = -4170.817380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35736 -40.67704 -39.35259 -37.74104 -34.82954 -34.26111 -33.72700 -32.89836 -31.64064 -29.33357 -28.98698 -28.39541 -27.64101 -26.71618 -24.50633 -23.12287 -22.20654 -21.12400 -20.46250 -20.37518 -19.92852 -19.57784 -18.60173 -17.42852 -16.84570 -16.72430 -16.22235 -15.63841 -15.17563 -14.85340 -14.71687 -14.48934 -14.36416 -14.21506 -13.94991 -13.87815 -13.38374 -13.13340 -13.08056 -12.96904 -12.68910 -12.55801 -12.45140 -12.21690 -12.09806 -11.39009 -11.27519 -10.93852 -10.84135 -10.49996 -10.44653 -10.21799 -10.08141 -9.81212 -9.72380 -9.32920 -9.29964 -8.71792 -8.64753 -8.46113 -8.27227 -6.85593 -5.73598 -3.06262 0.81666 1.56088 1.87240 2.22575 2.72946 2.95733 3.35195 3.41053 3.47020 3.48590 3.49629 4.00681 4.49135 4.53098 4.58457 4.61729 4.65334 4.77534 4.92609 4.97947 5.16213 5.26773 5.32003 5.38987 5.45125 5.49923 5.57698 5.73866 5.88541 5.96589 6.09980 6.12210 6.12438 6.15028 6.24146 6.63558 6.69554 6.76608 6.92165 6.97139 7.14842 7.24412 7.34805 7.46467 7.74593 7.85960 8.08377 8.21279 8.50250 9.19590 9.79686 10.44078 11.38738 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.002772 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.913586 B =10099.596607 C =11264.084106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.365 5.365 3 N -0.277 5.277 4 C 0.098 3.902 5 C -0.279 4.279 6 C 0.586 3.414 7 O -0.540 6.540 8 N -0.700 5.700 9 C 0.142 3.858 10 H 0.106 0.894 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.010 4.010 16 N -0.926 5.926 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.154 3.846 22 C 0.068 3.932 23 H 0.061 0.939 24 O -0.568 6.568 25 C 0.357 3.643 26 N -0.392 5.392 27 C 0.065 3.935 28 C -0.206 4.206 29 C -0.168 4.168 30 C -0.040 4.040 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.201 0.799 35 H 0.405 0.595 36 H 0.026 0.974 37 H 0.044 0.956 38 H 0.252 0.748 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.379 0.621 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.798 6.761 -5.969 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.147 5.147 3 N -0.097 5.097 4 C -0.090 4.090 5 C -0.296 4.296 6 C 0.372 3.628 7 O -0.418 6.418 8 N -0.350 5.350 9 C 0.037 3.963 10 H 0.124 0.876 11 C 0.004 3.996 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.575 5.575 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.029 3.971 22 C 0.008 3.992 23 H 0.078 0.922 24 O -0.374 6.374 25 C 0.134 3.866 26 N -0.070 5.070 27 C -0.061 4.061 28 C -0.229 4.229 29 C -0.193 4.193 30 C -0.164 4.164 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.218 0.782 35 H 0.241 0.759 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.227 0.773 42 H 0.187 0.813 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.056 6.929 -5.627 25.658 hybrid contribution 1.762 -0.465 0.458 1.879 sum -22.293 6.465 -5.169 23.780 Atomic orbital electron populations 1.22156 0.73303 1.05297 1.04391 1.48609 1.07262 1.02447 1.56430 1.77282 1.01996 1.04999 1.25410 1.24043 0.95441 0.93376 0.96114 1.19984 0.91670 0.94076 1.23822 1.17015 0.82227 0.87011 0.76501 1.90833 1.86461 1.13522 1.51023 1.45491 1.04500 1.10796 1.74259 1.22340 0.81521 0.93572 0.98903 0.87604 1.21832 0.86324 0.98201 0.93222 1.44283 1.02954 1.61833 1.23667 1.19144 0.90247 1.24762 1.00901 0.90240 1.24781 0.96708 1.00995 0.98081 1.69916 1.11520 1.49605 1.26430 0.86005 0.80231 0.79272 0.80054 1.20457 1.21723 1.21790 1.21851 0.90988 0.96402 0.87874 1.23512 0.97063 0.81386 0.97240 0.92159 1.86234 1.51906 1.19570 1.79701 1.17875 0.89458 0.80308 0.98941 1.40571 1.30663 1.03102 1.32701 1.22032 1.00014 0.85846 0.98178 1.20976 1.00795 0.98014 1.03147 1.20978 1.02530 0.94338 1.01474 1.21816 0.96970 0.95709 1.01878 0.89907 0.88956 0.88251 0.78246 0.75946 0.95675 0.93791 0.93803 0.92666 0.92928 0.77286 0.81336 0.83850 0.84049 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.32 59.85 0.68 1.23 16 2 N -0.37 -3.87 3.99 -66.65 -0.27 -4.14 16 3 N -0.28 -3.15 12.48 30.86 0.39 -2.77 16 4 C 0.10 1.08 11.49 -16.98 -0.20 0.88 16 5 C -0.28 -3.75 6.13 -104.86 -0.64 -4.39 16 6 C 0.59 9.30 7.78 -12.71 -0.10 9.21 16 7 O -0.54 -10.11 12.94 5.23 0.07 -10.04 16 8 N -0.70 -10.68 5.16 -52.92 -0.27 -10.95 16 9 C 0.14 2.61 3.31 -65.78 -0.22 2.39 16 10 H 0.11 2.07 7.54 -51.93 -0.39 1.67 16 11 C 0.13 2.90 6.92 -2.53 -0.02 2.88 16 12 N -0.60 -15.47 3.39 -170.07 -0.58 -16.04 16 13 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 14 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 15 C -0.01 -0.28 5.49 -17.44 -0.10 -0.38 16 16 N -0.93 -26.80 10.31 55.49 0.57 -26.22 16 17 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C 0.15 3.59 5.14 -3.06 -0.02 3.57 16 22 C 0.07 1.20 4.19 -24.90 -0.10 1.09 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 O -0.57 -8.71 12.15 -35.23 -0.43 -9.14 16 25 C 0.36 4.55 7.11 -153.05 -1.09 3.46 16 26 N -0.39 -4.98 2.80 -62.23 -0.17 -5.15 16 27 C 0.07 0.88 8.95 -16.59 -0.15 0.73 16 28 C -0.21 -2.50 10.86 -39.75 -0.43 -2.93 16 29 C -0.17 -1.82 10.86 -39.75 -0.43 -2.25 16 30 C -0.04 -0.43 9.91 -16.59 -0.16 -0.60 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.47 5.41 -51.93 -0.28 0.19 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.20 1.57 7.50 -52.49 -0.39 1.18 16 35 H 0.41 5.37 6.53 -40.82 -0.27 5.10 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.42 7.38 -51.93 -0.38 1.03 16 40 H 0.05 1.34 7.44 -51.93 -0.39 0.95 16 41 H 0.38 4.48 9.12 45.56 0.42 4.90 16 42 H 0.17 2.34 7.10 -52.49 -0.37 1.96 16 43 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.16 1.26 6.94 -52.49 -0.36 0.89 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -35.08 371.73 -8.17 -43.25 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.93 Total: 9.86 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -3.13 Total: 8.48 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.33 Total: -65.28 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.36 Total: -19.19 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.08 -8.17 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083686784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.453 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds