Wall clock time and date at job start Wed Apr 1 2020 03:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39904 * 125.75304 * 2 1 4 4 C 1.30364 * 109.14476 * 180.02562 * 3 2 1 5 5 C 1.41369 * 108.16245 * 359.97438 * 4 3 2 6 6 C 1.47013 * 126.48555 * 180.02562 * 5 4 3 7 7 O 1.21655 * 120.00065 * 179.97438 * 6 5 4 8 8 N 1.34772 * 119.99780 * 359.97438 * 6 5 4 9 9 C 1.46511 * 119.99791 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.88357 * 31.11581 * 9 8 6 11 11 C 1.54913 * 111.00019 * 267.19391 * 9 8 6 12 12 N 1.47419 * 104.82828 * 204.91582 * 11 9 8 13 13 C 1.36942 * 125.65055 * 204.10863 * 12 11 9 14 14 H 1.08005 * 119.99254 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31609 * 120.00469 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99727 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47109 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47208 * 119.99662 * 17 15 13 20 20 H 1.48503 * 109.47226 * 239.99848 * 17 15 13 21 21 C 1.47024 * 108.70597 * 24.13100 * 12 11 9 22 22 C 1.54326 * 107.27027 * 358.93753 * 21 12 11 23 23 H 1.08997 * 110.72056 * 219.44836 * 22 21 12 24 24 O 1.42893 * 110.86930 * 96.24448 * 22 21 12 25 25 C 1.34735 * 125.75670 * 179.68666 * 2 1 3 26 26 N 1.38986 * 126.41611 * 359.96995 * 25 2 1 27 27 C 1.36732 * 125.69714 * 134.71435 * 26 25 2 28 28 C 1.34787 * 108.18743 * 179.86536 * 27 26 25 29 29 C 1.41022 * 107.50291 * 0.39003 * 28 27 26 30 30 C 1.34783 * 107.50692 * 359.75761 * 29 28 27 31 31 H 1.09001 * 109.47060 * 90.03153 * 1 2 3 32 32 H 1.09004 * 109.47073 * 210.02642 * 1 2 3 33 33 H 1.09000 * 109.47212 * 330.02724 * 1 2 3 34 34 H 1.07994 * 125.91508 * 180.02562 * 4 3 2 35 35 H 0.97001 * 120.00252 * 359.97438 * 8 6 5 36 36 H 1.09002 * 110.36483 * 323.75512 * 11 9 8 37 37 H 1.08997 * 110.36465 * 86.08271 * 11 9 8 38 38 H 0.97000 * 120.00422 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.88144 * 239.52495 * 21 12 11 40 40 H 1.08997 * 110.01538 * 118.42933 * 21 12 11 41 41 H 0.96701 * 114.00415 * 66.39048 * 24 22 21 42 42 H 1.07996 * 125.90270 * 0.02562 * 27 26 25 43 43 H 1.07998 * 126.24500 * 180.14320 * 28 27 26 44 44 H 1.07997 * 126.24329 * 179.75418 * 29 28 27 45 45 H 1.07996 * 125.90940 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5318 0.7628 -0.0006 5 6 3.5701 -0.6504 -0.0003 6 6 4.7754 -1.4922 -0.0003 7 8 4.6708 -2.7042 0.0004 8 7 5.9961 -0.9211 -0.0009 9 6 7.1973 -1.7600 -0.0014 10 1 7.0163 -2.6973 -0.5275 11 6 7.6937 -2.0197 1.4429 12 7 9.1339 -2.3009 1.3020 13 6 9.8965 -3.0206 2.1827 14 1 9.4462 -3.4371 3.0717 15 6 11.2483 -3.2139 1.9335 16 7 11.7971 -2.7060 0.8504 17 14 12.2886 -4.1951 3.1353 18 1 11.4402 -4.6540 4.2644 19 1 12.8688 -5.3727 2.4411 20 1 13.3839 -3.3382 3.6562 21 6 9.6162 -1.6801 0.0595 22 6 8.4045 -1.0023 -0.6143 23 1 8.4376 -1.1395 -1.6951 24 8 8.3499 0.3870 -0.2844 25 6 2.2524 -1.0934 0.0060 26 7 1.8269 -2.4165 0.0138 27 6 2.3260 -3.4197 -0.7697 28 6 1.6630 -4.5550 -0.4726 29 6 0.7141 -4.2438 0.5231 30 6 0.8351 -2.9308 0.8023 31 1 -0.3633 -0.0006 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5134 34 1 4.3888 1.4198 -0.0003 35 1 6.0795 0.0453 -0.0018 36 1 7.5384 -1.1361 2.0620 37 1 7.1795 -2.8797 1.8718 38 1 12.7418 -2.8408 0.6765 39 1 10.0283 -2.4434 -0.6005 40 1 10.3789 -0.9353 0.2863 41 1 9.0826 0.9058 -0.6438 42 1 3.1167 -3.3202 -1.4986 43 1 1.8259 -5.5249 -0.9187 44 1 0.0175 -4.9320 0.9786 45 1 0.2503 -2.3802 1.5242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083686784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:10 Heat of formation + Delta-G solvation = 72.868611 kcal Electronic energy + Delta-G solvation = -30411.253258 eV Core-core repulsion = 26239.337433 eV Total energy + Delta-G solvation = -4171.915825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.24091 -41.55984 -40.72594 -39.22478 -36.43242 -35.47439 -34.79692 -33.80137 -33.49118 -30.62940 -29.95969 -29.74924 -28.85474 -27.95583 -26.35719 -24.21384 -23.06907 -22.45112 -22.03931 -21.53217 -21.08817 -20.59696 -19.64708 -19.05152 -18.32588 -17.92607 -17.10353 -16.91261 -16.68103 -16.27159 -15.83854 -15.71146 -15.63827 -15.26594 -15.16767 -14.88454 -14.74971 -14.48330 -14.27927 -14.17221 -13.94340 -13.71399 -13.61055 -13.23352 -13.17470 -13.00693 -12.79835 -12.75622 -12.28565 -12.25531 -12.07338 -11.90457 -11.86667 -11.08076 -10.99143 -10.83241 -10.76295 -10.24129 -9.99110 -9.44721 -9.17751 -8.93346 -7.88078 -5.23617 -0.12440 0.75751 0.96628 1.32777 1.45687 1.46412 1.56973 1.89089 2.06368 2.14726 2.33090 2.49642 3.16600 3.29204 3.31170 3.65355 3.73652 3.77963 3.84660 3.93141 3.98552 4.18243 4.25591 4.29259 4.31966 4.35849 4.51603 4.54089 4.63144 4.64636 4.69525 4.85028 5.07053 5.12682 5.23323 5.29220 5.35831 5.37774 5.47611 5.52822 5.66919 5.88934 6.04911 6.15624 6.28605 6.36158 6.64910 6.91436 7.07827 7.29095 7.71811 8.35354 9.21852 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.002772 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.913586 B =10099.596607 C =11264.084106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.357 5.357 3 N -0.285 5.285 4 C 0.106 3.894 5 C -0.303 4.303 6 C 0.586 3.414 7 O -0.574 6.574 8 N -0.688 5.688 9 C 0.157 3.843 10 H 0.093 0.907 11 C 0.133 3.867 12 N -0.621 5.621 13 C -0.245 4.245 14 H 0.075 0.925 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.979 3.021 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.160 3.840 22 C 0.094 3.906 23 H 0.091 0.909 24 O -0.563 6.563 25 C 0.351 3.649 26 N -0.398 5.398 27 C 0.036 3.964 28 C -0.212 4.212 29 C -0.176 4.176 30 C -0.038 4.038 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.417 0.583 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.249 0.751 39 H 0.024 0.976 40 H 0.027 0.973 41 H 0.399 0.601 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.167 0.833 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.731 8.016 -5.699 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.138 5.138 3 N -0.105 5.105 4 C -0.081 4.081 5 C -0.320 4.320 6 C 0.375 3.625 7 O -0.454 6.454 8 N -0.339 5.339 9 C 0.050 3.950 10 H 0.111 0.889 11 C 0.006 3.994 12 N -0.348 5.348 13 C -0.374 4.374 14 H 0.093 0.907 15 C -0.253 4.253 16 N -0.596 5.596 17 Si 0.807 3.193 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.034 3.966 22 C 0.033 3.967 23 H 0.109 0.891 24 O -0.372 6.372 25 C 0.126 3.874 26 N -0.077 5.077 27 C -0.090 4.090 28 C -0.236 4.236 29 C -0.200 4.200 30 C -0.161 4.161 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.245 0.755 35 H 0.255 0.745 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.249 0.751 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.185 0.815 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.034 8.246 -5.367 27.831 hybrid contribution 2.270 -0.843 0.396 2.453 sum -23.764 7.403 -4.971 25.382 Atomic orbital electron populations 1.22553 0.70867 1.06908 1.05763 1.48930 1.08530 1.01484 1.54896 1.77268 1.02183 1.05377 1.25643 1.24434 0.96218 0.92490 0.94921 1.19844 0.90985 0.94968 1.26232 1.17363 0.82859 0.86848 0.75476 1.90821 1.86946 1.15182 1.52467 1.45264 1.03428 1.11009 1.74245 1.21895 0.83056 0.93956 0.96045 0.88870 1.21867 0.84648 0.97171 0.95708 1.44555 1.04393 1.61787 1.24066 1.19435 0.91077 1.25391 1.01515 0.90713 1.25584 0.97711 1.02165 0.99869 1.70109 1.11456 1.50349 1.27652 0.85012 0.78421 0.77700 0.78191 1.19559 1.21605 1.21504 1.21720 0.92957 0.95068 0.86841 1.23111 0.93540 0.82000 0.98010 0.89113 1.86197 1.52827 1.18082 1.80047 1.18007 0.89835 0.80869 0.98732 1.40672 1.31067 1.03025 1.32939 1.21970 1.00821 0.86922 0.99246 1.21275 1.00848 0.98060 1.03380 1.21328 1.02642 0.94953 1.01118 1.22385 0.96215 0.96044 1.01494 0.88648 0.87656 0.86352 0.75537 0.74462 0.95768 0.95669 0.94131 0.95764 0.95488 0.75054 0.82879 0.82933 0.81546 0.79315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.32 127.77 1.45 2.20 16 2 N -0.36 -6.79 3.99 -364.77 -1.46 -8.25 16 3 N -0.28 -5.82 12.48 -56.27 -0.70 -6.52 16 4 C 0.11 2.12 11.49 85.68 0.98 3.11 16 5 C -0.30 -7.86 6.13 -20.02 -0.12 -7.98 16 6 C 0.59 18.52 7.78 86.54 0.67 19.19 16 7 O -0.57 -22.03 12.94 -4.21 -0.05 -22.08 16 8 N -0.69 -20.40 5.16 -439.59 -2.27 -22.66 16 9 C 0.16 5.76 3.31 46.38 0.15 5.92 16 10 H 0.09 3.71 7.54 -2.39 -0.02 3.69 16 11 C 0.13 5.99 6.92 86.86 0.60 6.59 16 12 N -0.62 -32.87 3.39 -691.99 -2.35 -35.22 16 13 C -0.25 -14.23 10.28 84.03 0.86 -13.37 16 14 H 0.07 4.27 7.83 -2.91 -0.02 4.24 16 15 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 16 N -0.95 -55.98 10.31 21.65 0.22 -55.76 16 17 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 C 0.16 7.58 5.14 86.73 0.45 8.02 16 22 C 0.09 3.21 4.19 31.78 0.13 3.34 16 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 24 O -0.56 -16.04 12.15 -148.98 -1.81 -17.85 16 25 C 0.35 8.52 7.11 132.33 0.94 9.46 16 26 N -0.40 -9.80 2.80 -350.79 -0.98 -10.78 16 27 C 0.04 1.00 8.95 83.14 0.74 1.74 16 28 C -0.21 -5.09 10.86 22.16 0.24 -4.85 16 29 C -0.18 -3.51 10.86 22.16 0.24 -3.27 16 30 C -0.04 -0.75 9.91 83.13 0.82 0.07 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.74 5.41 -2.38 -0.01 0.73 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.23 2.90 7.50 -2.91 -0.02 2.88 16 35 H 0.42 10.22 6.53 -92.71 -0.61 9.62 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 39 H 0.02 1.29 7.38 -2.39 -0.02 1.27 16 40 H 0.03 1.40 7.44 -2.39 -0.02 1.39 16 41 H 0.40 8.40 9.12 -74.06 -0.68 7.72 16 42 H 0.15 4.53 7.10 -2.91 -0.02 4.51 16 43 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.19 2.38 6.94 -2.91 -0.02 2.36 16 Total: -1.00 -78.15 371.73 1.04 -77.11 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.23 Total: 26.38 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 8.63 Total: 27.19 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -7.53 Total: -139.19 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.86 Total: -39.93 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -78.15 1.04 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083686784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.980 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds