Wall clock time and date at job start Wed Apr 1 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00066 * 2 1 4 4 C 1.53000 * 109.47262 * 276.44566 * 3 2 1 5 5 H 1.09003 * 113.03713 * 49.65132 * 4 3 2 6 6 C 1.53941 * 113.77259 * 181.41008 * 4 3 2 7 7 C 1.53947 * 86.29117 * 137.90812 * 6 4 3 8 8 N 1.47591 * 86.23955 * 336.33845 * 7 6 4 9 9 C 1.36936 * 134.49376 * 204.69739 * 8 7 6 10 10 H 1.07996 * 119.99922 * 55.11291 * 9 8 7 11 11 C 1.38807 * 120.00056 * 235.11875 * 9 8 7 12 12 N 1.31619 * 120.00353 * 187.89915 * 11 9 8 13 13 Si 1.86804 * 120.00061 * 7.89737 * 11 9 8 14 14 H 1.48501 * 109.47027 * 84.54131 * 13 11 9 15 15 H 1.48496 * 109.47271 * 204.54398 * 13 11 9 16 16 H 1.48504 * 109.46950 * 324.54216 * 13 11 9 17 17 C 1.34773 * 120.00196 * 179.97438 * 2 1 3 18 18 O 1.21488 * 120.00192 * 185.45627 * 17 2 1 19 19 C 1.48355 * 119.99698 * 5.45982 * 17 2 1 20 20 C 1.41882 * 126.84151 * 185.56023 * 19 17 2 21 21 C 1.36732 * 103.81964 * 179.97438 * 20 19 17 22 22 C 1.47853 * 126.81974 * 179.97438 * 21 20 19 23 23 C 1.41041 * 126.06594 * 180.02562 * 22 21 20 24 24 C 1.35013 * 107.84447 * 179.97438 * 23 22 21 25 25 N 1.35081 * 108.03378 * 359.97438 * 24 23 22 26 26 C 1.46500 * 125.91466 * 179.97438 * 25 24 23 27 27 N 1.31816 * 126.06729 * 359.68650 * 22 21 20 28 28 O 1.34459 * 106.35977 * 359.97438 * 21 20 19 29 29 N 1.20874 * 111.73636 * 359.70628 * 28 21 20 30 30 H 1.09006 * 109.47176 * 95.74679 * 1 2 3 31 31 H 1.08997 * 109.47797 * 215.75177 * 1 2 3 32 32 H 1.09001 * 109.47354 * 335.75327 * 1 2 3 33 33 H 1.09000 * 109.47458 * 156.44139 * 3 2 1 34 34 H 1.09005 * 109.46996 * 36.44552 * 3 2 1 35 35 H 1.08998 * 113.73788 * 23.56260 * 6 4 3 36 36 H 1.09000 * 113.83843 * 252.26866 * 6 4 3 37 37 H 1.09000 * 113.76894 * 90.68952 * 7 6 4 38 38 H 1.08995 * 113.76700 * 221.98532 * 7 6 4 39 39 H 0.96994 * 120.00405 * 180.02562 * 12 11 9 40 40 H 1.08010 * 128.09426 * 0.02562 * 20 19 17 41 41 H 1.07999 * 126.07800 * 0.02562 * 23 22 21 42 42 H 1.07996 * 125.98496 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47019 * 90.00088 * 26 25 24 44 44 H 1.08998 * 109.47248 * 210.00421 * 26 25 24 45 45 H 1.09002 * 109.46694 * 330.00038 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3123 1.7914 -1.4334 5 1 1.3592 1.7989 -1.9623 6 6 3.0982 3.1097 -1.5521 7 6 3.7576 2.4883 -2.7967 8 7 3.4171 1.1801 -2.2041 9 6 3.9225 -0.0872 -2.3211 10 1 4.9698 -0.2704 -2.1316 11 6 3.0887 -1.1362 -2.6832 12 7 3.5341 -2.3742 -2.6452 13 14 1.3345 -0.7910 -3.2245 14 1 1.3198 -0.4549 -4.6709 15 1 0.4974 -1.9944 -2.9874 16 1 0.7917 0.3508 -2.4454 17 6 2.1389 -1.1671 0.0005 18 8 3.3496 -1.1695 0.1006 19 6 1.4021 -2.4491 -0.1212 20 6 1.9471 -3.7557 -0.0274 21 6 0.8664 -4.5739 -0.2070 22 6 0.8645 -6.0524 -0.2052 23 6 -0.2610 -6.8815 -0.3928 24 6 0.1538 -8.1644 -0.3219 25 7 1.4861 -8.1615 -0.0992 26 6 2.3359 -9.3461 0.0448 27 7 1.9153 -6.8297 -0.0341 28 8 -0.1941 -3.7669 -0.3857 29 7 0.1167 -2.6002 -0.3296 30 1 -0.3634 -0.1029 -1.0226 31 1 -0.3634 -0.8340 0.6004 32 1 -0.3634 0.9370 0.4220 33 1 3.1950 1.1124 0.4107 34 1 1.6632 1.9968 0.6105 35 1 3.7912 3.2832 -0.7288 36 1 2.4746 3.9761 -1.7723 37 1 3.2291 2.7005 -3.7260 38 1 4.8295 2.6739 -2.8649 39 1 2.9516 -3.1072 -2.8986 40 1 2.9751 -4.0381 0.1462 41 1 -1.2743 -6.5493 -0.5637 42 1 -0.4703 -9.0397 -0.4251 43 1 2.7161 -9.6416 -0.9331 44 1 3.1719 -9.1155 0.7051 45 1 1.7519 -10.1626 0.4696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085613710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:49 Heat of formation + Delta-G solvation = 212.910469 kcal Electronic energy + Delta-G solvation = -31527.078045 eV Core-core repulsion = 27361.234891 eV Total energy + Delta-G solvation = -4165.843154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -44.53820 -41.17748 -39.21383 -37.57540 -34.73497 -34.09741 -33.37425 -32.10879 -31.31668 -30.16195 -28.69756 -28.01512 -26.81276 -26.10739 -24.19363 -22.97008 -22.82213 -22.30498 -21.06582 -20.76204 -19.30690 -18.57791 -17.52677 -17.39663 -16.55294 -16.50817 -16.05200 -15.63176 -15.56900 -15.06236 -14.82805 -14.38727 -13.88463 -13.67800 -13.49046 -13.41673 -13.02365 -13.01029 -12.74582 -12.73448 -12.54674 -12.45397 -12.16053 -11.91959 -11.69533 -11.28470 -11.04100 -10.85527 -10.77604 -10.61104 -10.30398 -10.13404 -10.00003 -9.79506 -9.60008 -9.36733 -9.12118 -8.97204 -8.40034 -8.23863 -7.80555 -6.32156 -5.79597 -3.42423 1.12708 1.86796 2.12431 2.15628 3.11634 3.24645 3.41465 3.51135 3.53617 3.55356 4.11481 4.42820 4.51042 4.52509 4.63019 4.80852 4.92324 4.95149 5.15747 5.25289 5.38229 5.42280 5.50111 5.54002 5.59640 5.62378 5.80025 5.81564 5.87372 5.98611 6.00767 6.12777 6.25657 6.30021 6.35121 6.36655 6.45454 6.53699 6.66777 6.76604 6.80244 7.17417 7.31396 7.46809 8.00037 8.09361 8.44147 8.46544 8.98532 9.06659 9.81241 10.65673 11.32988 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003521 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.112924 B = 7949.534731 C = 8311.275371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.608 5.608 3 C 0.128 3.872 4 C 0.102 3.898 5 H 0.057 0.943 6 C -0.146 4.146 7 C 0.102 3.898 8 N -0.606 5.606 9 C -0.222 4.222 10 H 0.074 0.926 11 C 0.057 3.943 12 N -0.879 5.879 13 Si 0.843 3.157 14 H -0.297 1.297 15 H -0.294 1.294 16 H -0.239 1.239 17 C 0.592 3.408 18 O -0.451 6.451 19 C 0.004 3.996 20 C -0.110 4.110 21 C 0.011 3.989 22 C 0.152 3.848 23 C -0.248 4.248 24 C 0.053 3.947 25 N -0.370 5.370 26 C 0.101 3.899 27 N -0.257 5.257 28 O 0.119 5.881 29 N -0.333 5.333 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.256 0.744 40 H 0.183 0.817 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 -8.809 8.016 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.005 3.995 4 C -0.004 4.004 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.022 4.022 8 N -0.335 5.335 9 C -0.351 4.351 10 H 0.091 0.909 11 C -0.146 4.146 12 N -0.519 5.519 13 Si 0.673 3.327 14 H -0.224 1.224 15 H -0.221 1.221 16 H -0.164 1.164 17 C 0.375 3.625 18 O -0.317 6.317 19 C -0.154 4.154 20 C -0.134 4.134 21 C -0.053 4.053 22 C -0.013 4.013 23 C -0.278 4.278 24 C -0.091 4.091 25 N -0.154 5.154 26 C -0.040 4.040 27 N -0.082 5.082 28 O 0.046 5.954 29 N -0.037 5.037 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.201 0.799 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.508 -8.529 8.109 14.521 hybrid contribution -1.465 -0.503 -0.965 1.825 sum -9.973 -9.032 7.144 15.234 Atomic orbital electron populations 1.21951 0.80353 1.01962 1.02198 1.47382 1.06236 1.05844 1.74942 1.21710 0.97736 0.82834 0.97221 1.23328 0.94149 0.90701 0.92234 0.92546 1.23552 0.99478 0.95799 0.99674 1.22740 0.97908 0.87845 0.93689 1.46194 1.35764 1.04281 1.47216 1.18243 0.95454 0.79946 1.41464 0.90895 1.25854 0.97347 0.95638 0.95768 1.69804 1.35654 0.98126 1.48287 0.87613 0.87097 0.78720 0.79288 1.22445 1.22087 1.16392 1.16502 0.86322 0.80835 0.78833 1.90856 1.11570 1.85147 1.44175 1.23554 0.89602 0.97573 1.04654 1.22604 1.00735 0.89263 1.00775 1.20684 0.87104 0.89549 1.08000 1.18824 0.92263 0.88341 1.01836 1.21538 1.00228 0.91210 1.14777 1.22462 0.85291 0.99517 1.01860 1.48545 1.06397 1.05227 1.55244 1.21914 0.95342 0.83030 1.03679 1.77782 1.20227 0.86457 1.23781 1.84793 1.33482 1.11157 1.65980 1.74253 1.16437 0.95941 1.17061 0.92919 0.90922 0.91619 0.88879 0.91807 0.90446 0.92927 0.95219 0.93506 0.93360 0.79924 0.82622 0.80372 0.90431 0.88974 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 8.75 59.85 0.52 1.92 16 2 N -0.61 -12.81 1.74 -182.50 -0.32 -13.13 16 3 C 0.13 2.52 5.42 -4.04 -0.02 2.50 16 4 C 0.10 2.15 2.97 -66.67 -0.20 1.95 16 5 H 0.06 1.25 5.89 -51.93 -0.31 0.94 16 6 C -0.15 -2.58 7.86 -25.79 -0.20 -2.78 16 7 C 0.10 2.15 8.92 -2.97 -0.03 2.12 16 8 N -0.61 -15.27 2.64 -169.62 -0.45 -15.72 16 9 C -0.22 -6.58 8.78 -15.06 -0.13 -6.72 16 10 H 0.07 2.43 8.06 -52.49 -0.42 2.01 16 11 C 0.06 1.69 3.07 -17.43 -0.05 1.64 16 12 N -0.88 -27.18 13.87 55.49 0.77 -26.41 16 13 Si 0.84 22.84 22.84 -169.99 -3.88 18.95 16 14 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 15 H -0.29 -8.12 7.11 56.52 0.40 -7.72 16 16 H -0.24 -5.90 2.53 56.52 0.14 -5.76 16 17 C 0.59 14.19 4.26 -12.10 -0.05 14.14 16 18 O -0.45 -12.32 13.69 5.38 0.07 -12.25 16 19 C 0.00 0.10 5.60 -82.62 -0.46 -0.37 16 20 C -0.11 -2.34 10.95 -38.73 -0.42 -2.76 16 21 C 0.01 0.21 7.35 -36.19 -0.27 -0.06 16 22 C 0.15 2.49 7.11 -82.88 -0.59 1.90 16 23 C -0.25 -3.13 10.77 -39.67 -0.43 -3.55 16 24 C 0.05 0.53 11.46 -17.27 -0.20 0.33 16 25 N -0.37 -4.29 4.01 -68.21 -0.27 -4.56 16 26 C 0.10 0.67 11.46 59.85 0.69 1.36 16 27 N -0.26 -4.16 12.60 33.36 0.42 -3.74 16 28 O 0.12 2.25 11.20 16.06 0.18 2.43 16 29 N -0.33 -6.87 8.82 33.35 0.29 -6.58 16 30 H 0.05 1.02 5.68 -51.93 -0.29 0.73 16 31 H 0.07 1.25 5.98 -51.93 -0.31 0.94 16 32 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.09 2.03 7.18 -51.93 -0.37 1.66 16 34 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 35 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 40 H 0.18 3.99 8.06 -52.48 -0.42 3.57 16 41 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -37.60 360.99 -5.74 -43.34 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.15 Total: 0.60 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.84 Total: 11.62 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: 0.44 Total: -70.14 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.25 Total: -9.82 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -3.88 Total: 18.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.60 -5.74 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085613710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.249 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds