Wall clock time and date at job start Wed Apr 1 2020 03:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00066 * 2 1 4 4 C 1.53000 * 109.47262 * 276.44566 * 3 2 1 5 5 H 1.09003 * 113.03713 * 49.65132 * 4 3 2 6 6 C 1.53941 * 113.77259 * 181.41008 * 4 3 2 7 7 C 1.53947 * 86.29117 * 137.90812 * 6 4 3 8 8 N 1.47591 * 86.23955 * 336.33845 * 7 6 4 9 9 C 1.36936 * 134.49376 * 204.69739 * 8 7 6 10 10 H 1.07996 * 119.99922 * 55.11291 * 9 8 7 11 11 C 1.38807 * 120.00056 * 235.11875 * 9 8 7 12 12 N 1.31619 * 120.00353 * 187.89915 * 11 9 8 13 13 Si 1.86804 * 120.00061 * 7.89737 * 11 9 8 14 14 H 1.48501 * 109.47027 * 84.54131 * 13 11 9 15 15 H 1.48496 * 109.47271 * 204.54398 * 13 11 9 16 16 H 1.48504 * 109.46950 * 324.54216 * 13 11 9 17 17 C 1.34773 * 120.00196 * 179.97438 * 2 1 3 18 18 O 1.21488 * 120.00192 * 185.45627 * 17 2 1 19 19 C 1.48355 * 119.99698 * 5.45982 * 17 2 1 20 20 C 1.41882 * 126.84151 * 185.56023 * 19 17 2 21 21 C 1.36732 * 103.81964 * 179.97438 * 20 19 17 22 22 C 1.47853 * 126.81974 * 179.97438 * 21 20 19 23 23 C 1.41041 * 126.06594 * 180.02562 * 22 21 20 24 24 C 1.35013 * 107.84447 * 179.97438 * 23 22 21 25 25 N 1.35081 * 108.03378 * 359.97438 * 24 23 22 26 26 C 1.46500 * 125.91466 * 179.97438 * 25 24 23 27 27 N 1.31816 * 126.06729 * 359.68650 * 22 21 20 28 28 O 1.34459 * 106.35977 * 359.97438 * 21 20 19 29 29 N 1.20874 * 111.73636 * 359.70628 * 28 21 20 30 30 H 1.09006 * 109.47176 * 95.74679 * 1 2 3 31 31 H 1.08997 * 109.47797 * 215.75177 * 1 2 3 32 32 H 1.09001 * 109.47354 * 335.75327 * 1 2 3 33 33 H 1.09000 * 109.47458 * 156.44139 * 3 2 1 34 34 H 1.09005 * 109.46996 * 36.44552 * 3 2 1 35 35 H 1.08998 * 113.73788 * 23.56260 * 6 4 3 36 36 H 1.09000 * 113.83843 * 252.26866 * 6 4 3 37 37 H 1.09000 * 113.76894 * 90.68952 * 7 6 4 38 38 H 1.08995 * 113.76700 * 221.98532 * 7 6 4 39 39 H 0.96994 * 120.00405 * 180.02562 * 12 11 9 40 40 H 1.08010 * 128.09426 * 0.02562 * 20 19 17 41 41 H 1.07999 * 126.07800 * 0.02562 * 23 22 21 42 42 H 1.07996 * 125.98496 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47019 * 90.00088 * 26 25 24 44 44 H 1.08998 * 109.47248 * 210.00421 * 26 25 24 45 45 H 1.09002 * 109.46694 * 330.00038 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3123 1.7914 -1.4334 5 1 1.3592 1.7989 -1.9623 6 6 3.0982 3.1097 -1.5521 7 6 3.7576 2.4883 -2.7967 8 7 3.4171 1.1801 -2.2041 9 6 3.9225 -0.0872 -2.3211 10 1 4.9698 -0.2704 -2.1316 11 6 3.0887 -1.1362 -2.6832 12 7 3.5341 -2.3742 -2.6452 13 14 1.3345 -0.7910 -3.2245 14 1 1.3198 -0.4549 -4.6709 15 1 0.4974 -1.9944 -2.9874 16 1 0.7917 0.3508 -2.4454 17 6 2.1389 -1.1671 0.0005 18 8 3.3496 -1.1695 0.1006 19 6 1.4021 -2.4491 -0.1212 20 6 1.9471 -3.7557 -0.0274 21 6 0.8664 -4.5739 -0.2070 22 6 0.8645 -6.0524 -0.2052 23 6 -0.2610 -6.8815 -0.3928 24 6 0.1538 -8.1644 -0.3219 25 7 1.4861 -8.1615 -0.0992 26 6 2.3359 -9.3461 0.0448 27 7 1.9153 -6.8297 -0.0341 28 8 -0.1941 -3.7669 -0.3857 29 7 0.1167 -2.6002 -0.3296 30 1 -0.3634 -0.1029 -1.0226 31 1 -0.3634 -0.8340 0.6004 32 1 -0.3634 0.9370 0.4220 33 1 3.1950 1.1124 0.4107 34 1 1.6632 1.9968 0.6105 35 1 3.7912 3.2832 -0.7288 36 1 2.4746 3.9761 -1.7723 37 1 3.2291 2.7005 -3.7260 38 1 4.8295 2.6739 -2.8649 39 1 2.9516 -3.1072 -2.8986 40 1 2.9751 -4.0381 0.1462 41 1 -1.2743 -6.5493 -0.5637 42 1 -0.4703 -9.0397 -0.4251 43 1 2.7161 -9.6416 -0.9331 44 1 3.1719 -9.1155 0.7051 45 1 1.7519 -10.1626 0.4696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085613710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:47 Heat of formation + Delta-G solvation = 185.001024 kcal Electronic energy + Delta-G solvation = -31528.288289 eV Core-core repulsion = 27361.234891 eV Total energy + Delta-G solvation = -4167.053398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -46.14212 -42.14380 -40.95616 -39.33398 -36.46554 -35.33985 -34.84408 -34.31047 -32.57707 -31.17454 -30.51028 -29.79150 -27.77336 -27.60727 -25.84896 -24.80532 -24.33162 -23.83182 -22.34619 -21.81907 -21.13023 -20.02880 -19.01105 -18.81070 -18.54354 -18.01367 -17.45845 -17.32618 -16.86293 -16.58650 -16.40821 -15.69476 -15.48665 -15.24805 -14.96908 -14.90166 -14.67237 -14.59976 -14.14858 -13.99100 -13.82210 -13.73978 -13.53965 -13.41233 -13.26988 -13.18271 -12.60437 -12.54782 -12.43451 -11.92285 -11.83408 -11.79410 -11.57853 -11.51034 -11.44440 -11.28877 -10.97737 -10.45318 -10.07262 -9.53793 -9.49341 -8.35413 -8.05715 -5.69269 -0.28966 0.37059 1.03798 1.13317 1.21803 1.26764 1.35883 1.84786 1.91938 2.05194 2.33626 2.42476 2.85976 3.13061 3.22679 3.32906 3.60853 3.85064 3.92414 3.98212 4.11561 4.19662 4.26293 4.29503 4.45561 4.46147 4.51119 4.60572 4.61165 4.69138 4.72393 4.73973 4.78827 4.84431 4.87851 4.92264 5.00666 5.08849 5.13922 5.33506 5.60499 5.73008 5.98459 6.06546 6.29893 6.36562 6.45149 6.69227 6.84886 7.30979 7.53094 8.51797 9.09154 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003521 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.112924 B = 7949.534731 C = 8311.275371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.125 3.875 4 C 0.097 3.903 5 H 0.059 0.941 6 C -0.112 4.112 7 C 0.093 3.907 8 N -0.638 5.638 9 C -0.214 4.214 10 H 0.014 0.986 11 C 0.022 3.978 12 N -0.916 5.916 13 Si 0.890 3.110 14 H -0.314 1.314 15 H -0.305 1.305 16 H -0.199 1.199 17 C 0.587 3.413 18 O -0.503 6.503 19 C -0.015 4.015 20 C -0.145 4.145 21 C 0.039 3.961 22 C 0.114 3.886 23 C -0.263 4.263 24 C 0.080 3.920 25 N -0.363 5.363 26 C 0.089 3.911 27 N -0.305 5.305 28 O 0.135 5.865 29 N -0.332 5.332 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.248 0.752 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.237 0.763 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 -8.465 8.640 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.003 3.997 4 C -0.008 4.008 5 H 0.076 0.924 6 C -0.150 4.150 7 C -0.031 4.031 8 N -0.367 5.367 9 C -0.344 4.344 10 H 0.032 0.968 11 C -0.178 4.178 12 N -0.558 5.558 13 Si 0.720 3.280 14 H -0.243 1.243 15 H -0.232 1.232 16 H -0.123 1.123 17 C 0.372 3.628 18 O -0.374 6.374 19 C -0.172 4.172 20 C -0.170 4.170 21 C -0.026 4.026 22 C -0.049 4.049 23 C -0.292 4.292 24 C -0.065 4.065 25 N -0.147 5.147 26 C -0.050 4.050 27 N -0.133 5.133 28 O 0.060 5.940 29 N -0.034 5.034 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.179 0.821 41 H 0.192 0.808 42 H 0.254 0.746 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.202 -8.101 8.749 17.060 hybrid contribution -0.252 -0.767 -1.127 1.386 sum -12.454 -8.867 7.622 17.083 Atomic orbital electron populations 1.22158 0.78001 1.04805 1.01741 1.47599 1.07804 1.05385 1.73482 1.21854 0.97341 0.83305 0.97236 1.23486 0.93045 0.92126 0.92156 0.92398 1.23343 0.98716 0.95293 0.97693 1.22957 0.98543 0.85739 0.95815 1.46458 1.37108 1.03859 1.49271 1.17747 0.93285 0.82596 1.40749 0.96808 1.26198 1.00302 0.95074 0.96189 1.69954 1.36582 0.98861 1.50386 0.86900 0.83648 0.79496 0.78001 1.24291 1.23221 1.12262 1.16814 0.85964 0.82041 0.77986 1.90824 1.13724 1.86018 1.46843 1.23473 0.90331 0.97412 1.06025 1.22430 1.00715 0.89963 1.03852 1.20982 0.85844 0.90877 1.04854 1.18876 0.94257 0.87090 1.04631 1.21884 1.00099 0.91773 1.15415 1.23309 0.84623 1.00302 0.98312 1.49011 1.07867 1.04537 1.53307 1.22380 0.95761 0.82256 1.04616 1.77689 1.21504 0.88951 1.25203 1.84748 1.33222 1.10842 1.65197 1.74201 1.15357 0.96612 1.17247 0.94336 0.90667 0.86788 0.91744 0.86188 0.89283 0.88302 0.94229 0.93681 0.94246 0.82059 0.80818 0.74636 0.89398 0.89582 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.45 8.75 127.77 1.12 3.57 16 2 N -0.61 -25.00 1.74 -849.61 -1.48 -26.48 16 3 C 0.12 4.64 5.42 86.38 0.47 5.11 16 4 C 0.10 3.82 2.97 45.02 0.13 3.95 16 5 H 0.06 2.31 5.89 -2.39 -0.01 2.30 16 6 C -0.11 -3.47 7.86 31.25 0.25 -3.22 16 7 C 0.09 3.74 8.92 86.48 0.77 4.51 16 8 N -0.64 -32.18 2.64 -690.57 -1.83 -34.01 16 9 C -0.21 -13.32 8.78 84.03 0.74 -12.58 16 10 H 0.01 1.04 8.06 -2.91 -0.02 1.01 16 11 C 0.02 1.36 3.07 84.86 0.26 1.62 16 12 N -0.92 -60.52 13.87 21.65 0.30 -60.22 16 13 Si 0.89 48.21 22.84 68.60 1.57 49.78 16 14 H -0.31 -17.77 7.11 99.48 0.71 -17.06 16 15 H -0.30 -16.91 7.11 99.48 0.71 -16.20 16 16 H -0.20 -9.36 2.53 99.48 0.25 -9.10 16 17 C 0.59 29.22 4.26 86.94 0.37 29.59 16 18 O -0.50 -29.44 13.69 -3.68 -0.05 -29.49 16 19 C -0.02 -0.71 5.60 42.85 0.24 -0.47 16 20 C -0.15 -6.69 10.95 22.82 0.25 -6.44 16 21 C 0.04 1.55 7.35 24.46 0.18 1.73 16 22 C 0.11 3.80 7.11 42.38 0.30 4.11 16 23 C -0.26 -6.14 10.77 22.22 0.24 -5.90 16 24 C 0.08 1.29 11.46 83.45 0.96 2.25 16 25 N -0.36 -7.73 4.01 -369.71 -1.48 -9.21 16 26 C 0.09 0.95 11.46 127.77 1.46 2.42 16 27 N -0.31 -10.16 12.60 -48.36 -0.61 -10.77 16 28 O 0.13 5.14 11.20 67.65 0.76 5.90 16 29 N -0.33 -13.85 8.82 -49.00 -0.43 -14.28 16 30 H 0.04 1.38 5.68 -2.38 -0.01 1.37 16 31 H 0.07 2.44 5.98 -2.39 -0.01 2.42 16 32 H 0.11 2.61 7.90 -2.39 -0.02 2.59 16 33 H 0.06 2.81 7.18 -2.39 -0.02 2.79 16 34 H 0.12 3.12 7.96 -2.38 -0.02 3.10 16 35 H 0.09 2.60 8.10 -2.39 -0.02 2.58 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 40 H 0.16 7.99 8.06 -2.91 -0.02 7.96 16 41 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.24 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -92.77 360.99 5.05 -87.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.57 Total: 10.83 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: 7.74 Total: 30.24 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -5.53 Total: -154.97 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.71 Total: -23.59 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.57 Total: 49.78 kcal Total: -92.77 5.05 -87.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085613710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.721 kcal (2) G-P(sol) polarization free energy of solvation -92.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds