Wall clock time and date at job start Wed Apr 1 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 120.00135 * 2 1 4 4 C 1.53003 * 109.46970 * 264.39264 * 3 2 1 5 5 H 1.08998 * 112.96127 * 311.38243 * 4 3 2 6 6 C 1.53938 * 113.76727 * 179.70192 * 4 3 2 7 7 C 1.53946 * 86.28925 * 222.09307 * 6 4 3 8 8 N 1.47587 * 113.76739 * 83.05963 * 4 3 2 9 9 C 1.36938 * 134.49345 * 318.92857 * 8 4 3 10 10 H 1.08001 * 119.99754 * 2.24156 * 9 8 4 11 11 C 1.38809 * 120.00007 * 182.24112 * 9 8 4 12 12 N 1.31625 * 119.99782 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00093 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47511 * 89.99719 * 13 11 9 15 15 H 1.48504 * 109.47361 * 209.99774 * 13 11 9 16 16 H 1.48503 * 109.47033 * 330.00046 * 13 11 9 17 17 C 1.34775 * 119.99984 * 179.97438 * 2 1 3 18 18 O 1.21498 * 120.00030 * 185.22995 * 17 2 1 19 19 C 1.48346 * 120.00270 * 5.24031 * 17 2 1 20 20 C 1.41884 * 126.84642 * 174.98596 * 19 17 2 21 21 C 1.36729 * 103.81998 * 180.16988 * 20 19 17 22 22 C 1.47857 * 126.82181 * 179.87323 * 21 20 19 23 23 C 1.41036 * 126.06815 * 179.72580 * 22 21 20 24 24 C 1.35007 * 107.84325 * 179.97438 * 23 22 21 25 25 N 1.35089 * 108.03749 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.91599 * 180.02562 * 25 24 23 27 27 N 1.31823 * 126.06446 * 359.68444 * 22 21 20 28 28 O 1.34455 * 106.36183 * 359.60973 * 21 20 19 29 29 N 1.20872 * 111.73852 * 0.26687 * 28 21 20 30 30 H 1.09000 * 109.47238 * 236.65825 * 1 2 3 31 31 H 1.08994 * 109.47042 * 356.66143 * 1 2 3 32 32 H 1.08996 * 109.46908 * 116.65971 * 1 2 3 33 33 H 1.09001 * 109.46698 * 24.39043 * 3 2 1 34 34 H 1.09001 * 109.47285 * 144.39025 * 3 2 1 35 35 H 1.09002 * 113.74466 * 336.43831 * 6 4 3 36 36 H 1.09001 * 113.74274 * 107.64220 * 6 4 3 37 37 H 1.09005 * 113.77028 * 137.90826 * 7 6 4 38 38 H 1.09004 * 113.77166 * 269.19308 * 7 6 4 39 39 H 0.96999 * 119.99636 * 180.02562 * 12 11 9 40 40 H 1.08000 * 128.09392 * 0.03437 * 20 19 17 41 41 H 1.07999 * 126.08179 * 359.97062 * 23 22 21 42 42 H 1.08004 * 125.98338 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47006 * 269.99843 * 26 25 24 44 44 H 1.09007 * 109.46708 * 29.99491 * 26 25 24 45 45 H 1.09001 * 109.47073 * 149.99151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5747 1.6399 -1.4356 5 1 3.0344 0.8158 -1.9811 6 6 3.3456 2.9673 -1.5512 7 6 2.4614 3.2587 -2.7772 8 7 1.4933 2.3155 -2.1789 9 6 0.1387 2.1389 -2.2743 10 1 -0.3487 1.3741 -1.6879 11 6 -0.6079 2.9430 -3.1245 12 7 -0.0138 3.8755 -3.8387 13 14 -2.4557 2.7026 -3.2541 14 1 -3.1379 3.5582 -2.2501 15 1 -2.9098 3.0804 -4.6166 16 1 -2.7887 1.2782 -2.9985 17 6 2.1389 -1.1672 0.0005 18 8 3.3501 -1.1693 0.0964 19 6 1.4019 -2.4493 -0.1162 20 6 1.9645 -3.7468 -0.2301 21 6 0.8752 -4.5692 -0.3110 22 6 0.8846 -6.0415 -0.4466 23 6 -0.2502 -6.8756 -0.5233 24 6 0.1802 -8.1497 -0.6413 25 7 1.5310 -8.1368 -0.6401 26 6 2.4017 -9.3099 -0.7493 27 7 1.9551 -6.8075 -0.5181 28 8 -0.2062 -3.7738 -0.2368 29 7 0.1008 -2.6096 -0.1299 30 1 -0.3634 -0.5648 0.8585 31 1 -0.3633 1.0259 0.0598 32 1 -0.3633 -0.4611 -0.9184 33 1 1.5687 2.0513 0.4244 34 1 3.1028 1.1657 0.5984 35 1 3.1763 3.6473 -0.7163 36 1 4.4019 2.8420 -1.7896 37 1 2.1023 4.2867 -2.8256 38 1 2.8877 2.9123 -3.7187 39 1 -0.5355 4.4376 -4.4326 40 1 3.0090 -4.0207 -0.2506 41 1 -1.2802 -6.5524 -0.4929 42 1 -0.4459 -9.0260 -0.7225 43 1 2.6176 -9.6961 0.2469 44 1 1.9018 -10.0800 -1.3370 45 1 3.3333 -9.0266 -1.2391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085613711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:55 Heat of formation + Delta-G solvation = 190.923694 kcal Electronic energy + Delta-G solvation = -29735.837059 eV Core-core repulsion = 25569.040487 eV Total energy + Delta-G solvation = -4166.796572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.06856 -41.50926 -39.60835 -37.71636 -35.13062 -34.50764 -33.85426 -32.19479 -31.71665 -30.50374 -28.68521 -27.76234 -27.14938 -26.40687 -24.43114 -23.43788 -23.26930 -22.46298 -21.34969 -21.14444 -19.13953 -18.83169 -17.89508 -17.86750 -16.96341 -16.81625 -16.44952 -15.89275 -15.79363 -15.08173 -14.86844 -14.77706 -14.18567 -14.12752 -13.92931 -13.63571 -13.32624 -13.23741 -13.07754 -12.92095 -12.82261 -12.63514 -12.27058 -11.58117 -11.36867 -11.28195 -11.14398 -11.07058 -10.94012 -10.72088 -10.69046 -10.48975 -10.43536 -10.11493 -9.77955 -9.63807 -9.34142 -9.26521 -8.80704 -8.74360 -8.23966 -6.80640 -5.71346 -3.02184 0.67575 1.37960 1.67061 1.78698 2.71495 2.79192 3.08242 3.36300 3.40140 3.45355 3.47196 3.95669 4.13450 4.15690 4.46741 4.48077 4.66123 4.84665 4.85228 4.94407 5.06254 5.19043 5.22824 5.36343 5.46219 5.55555 5.61971 5.74709 5.79426 5.82436 5.93292 6.01859 6.02647 6.10708 6.26334 6.34747 6.49056 6.49980 6.63721 6.75498 6.96197 7.11233 7.32049 7.47227 7.60924 7.65415 7.93057 8.04303 8.30255 9.09706 9.77338 10.69115 11.46359 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002612 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.449261 B =10716.961292 C =11874.933954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.582 5.582 3 C 0.118 3.882 4 C 0.127 3.873 5 H 0.046 0.954 6 C -0.158 4.158 7 C 0.161 3.839 8 N -0.603 5.603 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.010 4.010 12 N -0.920 5.920 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.592 3.408 18 O -0.531 6.531 19 C -0.017 4.017 20 C -0.139 4.139 21 C 0.031 3.969 22 C 0.142 3.858 23 C -0.244 4.244 24 C 0.057 3.943 25 N -0.367 5.367 26 C 0.100 3.900 27 N -0.260 5.260 28 O 0.135 5.865 29 N -0.313 5.313 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.252 0.748 40 H 0.185 0.815 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -24.617 8.979 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.313 5.313 3 C -0.005 4.005 4 C 0.019 3.981 5 H 0.063 0.937 6 C -0.197 4.197 7 C 0.036 3.964 8 N -0.329 5.329 9 C -0.353 4.353 10 H 0.106 0.894 11 C -0.206 4.206 12 N -0.568 5.568 13 Si 0.732 3.268 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.377 3.623 18 O -0.407 6.407 19 C -0.175 4.175 20 C -0.164 4.164 21 C -0.034 4.034 22 C -0.022 4.022 23 C -0.273 4.273 24 C -0.088 4.088 25 N -0.151 5.151 26 C -0.041 4.041 27 N -0.087 5.087 28 O 0.057 5.943 29 N -0.012 5.012 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.202 0.798 41 H 0.177 0.823 42 H 0.199 0.801 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.598 -23.770 8.970 25.539 hybrid contribution -1.361 -0.659 -0.512 1.597 sum 1.236 -24.428 8.458 25.881 Atomic orbital electron populations 1.22129 0.78277 1.03933 1.01730 1.47666 1.07942 1.05574 1.70088 1.22093 0.96576 0.82985 0.98855 1.22610 0.89657 0.94491 0.91340 0.93685 1.23766 0.97438 0.97371 1.01143 1.22172 0.86204 0.96333 0.91688 1.46225 1.00954 1.34341 1.51413 1.19340 0.80549 1.15043 1.20387 0.89357 1.24789 0.97753 0.99013 0.99054 1.69834 1.34042 1.22861 1.30041 0.86269 0.85614 0.77704 0.77170 1.21552 1.21733 1.20582 1.16843 0.86111 0.81496 0.77844 1.90764 1.12589 1.86452 1.50856 1.23447 0.89814 0.96988 1.07205 1.22619 1.01252 0.89258 1.03226 1.20756 0.86092 0.89936 1.06622 1.18807 0.92308 0.88298 1.02767 1.21582 0.99957 0.91300 1.14510 1.22540 0.84610 0.99793 1.01830 1.48547 1.05206 1.05481 1.55829 1.21963 0.95132 0.83453 1.03567 1.77695 1.20498 0.87009 1.23479 1.84903 1.32251 1.11612 1.65511 1.74443 1.15893 0.95694 1.15164 0.92434 0.88842 0.91316 0.89335 0.90297 0.90658 0.92868 0.91143 0.95745 0.93812 0.79792 0.82282 0.80091 0.90312 0.89011 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 7.32 59.85 0.44 1.88 16 2 N -0.58 -10.88 2.89 -182.50 -0.53 -11.41 16 3 C 0.12 2.21 5.26 -4.04 -0.02 2.19 16 4 C 0.13 2.72 4.50 -66.86 -0.30 2.42 16 5 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -3.10 7.86 -25.80 -0.20 -3.30 16 7 C 0.16 3.90 7.47 -2.85 -0.02 3.88 16 8 N -0.60 -15.38 3.59 -169.72 -0.61 -15.99 16 9 C -0.23 -6.14 10.29 -15.06 -0.16 -6.29 16 10 H 0.09 2.24 3.82 -52.49 -0.20 2.04 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.92 -27.52 11.46 55.49 0.64 -26.89 16 13 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.59 11.20 7.65 -12.10 -0.09 11.10 16 18 O -0.53 -10.95 16.59 5.37 0.09 -10.86 16 19 C -0.02 -0.28 6.92 -82.63 -0.57 -0.85 16 20 C -0.14 -2.03 10.95 -38.73 -0.42 -2.46 16 21 C 0.03 0.41 7.35 -36.19 -0.27 0.14 16 22 C 0.14 1.67 7.11 -82.87 -0.59 1.08 16 23 C -0.24 -2.17 10.77 -39.67 -0.43 -2.59 16 24 C 0.06 0.37 11.46 -17.27 -0.20 0.17 16 25 N -0.37 -2.90 4.01 -68.21 -0.27 -3.18 16 26 C 0.10 0.34 11.46 59.85 0.69 1.02 16 27 N -0.26 -3.03 12.60 33.36 0.42 -2.61 16 28 O 0.13 1.87 11.20 16.07 0.18 2.05 16 29 N -0.31 -4.97 8.83 33.35 0.29 -4.68 16 30 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 31 H 0.09 1.69 6.42 -51.93 -0.33 1.35 16 32 H 0.07 1.31 6.86 -51.93 -0.36 0.96 16 33 H 0.09 1.63 7.78 -51.93 -0.40 1.23 16 34 H 0.08 1.39 7.53 -51.93 -0.39 0.99 16 35 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.84 7.28 -51.93 -0.38 1.46 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.18 2.49 8.06 -52.49 -0.42 2.06 16 41 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.18 0.40 8.06 -52.48 -0.42 -0.03 16 43 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.09 0.06 8.14 -51.92 -0.42 -0.37 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -35.45 380.32 -7.13 -42.57 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.80 Total: 0.15 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.24 Total: 8.02 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.06 Total: -64.75 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.27 Total: -8.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.45 -7.13 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085613711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.498 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds