Wall clock time and date at job start Wed Apr 1 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 120.00135 * 2 1 4 4 C 1.53003 * 109.46970 * 264.39264 * 3 2 1 5 5 H 1.08998 * 112.96127 * 311.38243 * 4 3 2 6 6 C 1.53938 * 113.76727 * 179.70192 * 4 3 2 7 7 C 1.53946 * 86.28925 * 222.09307 * 6 4 3 8 8 N 1.47587 * 113.76739 * 83.05963 * 4 3 2 9 9 C 1.36938 * 134.49345 * 318.92857 * 8 4 3 10 10 H 1.08001 * 119.99754 * 2.24156 * 9 8 4 11 11 C 1.38809 * 120.00007 * 182.24112 * 9 8 4 12 12 N 1.31625 * 119.99782 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00093 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47511 * 89.99719 * 13 11 9 15 15 H 1.48504 * 109.47361 * 209.99774 * 13 11 9 16 16 H 1.48503 * 109.47033 * 330.00046 * 13 11 9 17 17 C 1.34775 * 119.99984 * 179.97438 * 2 1 3 18 18 O 1.21498 * 120.00030 * 185.22995 * 17 2 1 19 19 C 1.48346 * 120.00270 * 5.24031 * 17 2 1 20 20 C 1.41884 * 126.84642 * 174.98596 * 19 17 2 21 21 C 1.36729 * 103.81998 * 180.16988 * 20 19 17 22 22 C 1.47857 * 126.82181 * 179.87323 * 21 20 19 23 23 C 1.41036 * 126.06815 * 179.72580 * 22 21 20 24 24 C 1.35007 * 107.84325 * 179.97438 * 23 22 21 25 25 N 1.35089 * 108.03749 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.91599 * 180.02562 * 25 24 23 27 27 N 1.31823 * 126.06446 * 359.68444 * 22 21 20 28 28 O 1.34455 * 106.36183 * 359.60973 * 21 20 19 29 29 N 1.20872 * 111.73852 * 0.26687 * 28 21 20 30 30 H 1.09000 * 109.47238 * 236.65825 * 1 2 3 31 31 H 1.08994 * 109.47042 * 356.66143 * 1 2 3 32 32 H 1.08996 * 109.46908 * 116.65971 * 1 2 3 33 33 H 1.09001 * 109.46698 * 24.39043 * 3 2 1 34 34 H 1.09001 * 109.47285 * 144.39025 * 3 2 1 35 35 H 1.09002 * 113.74466 * 336.43831 * 6 4 3 36 36 H 1.09001 * 113.74274 * 107.64220 * 6 4 3 37 37 H 1.09005 * 113.77028 * 137.90826 * 7 6 4 38 38 H 1.09004 * 113.77166 * 269.19308 * 7 6 4 39 39 H 0.96999 * 119.99636 * 180.02562 * 12 11 9 40 40 H 1.08000 * 128.09392 * 0.03437 * 20 19 17 41 41 H 1.07999 * 126.08179 * 359.97062 * 23 22 21 42 42 H 1.08004 * 125.98338 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47006 * 269.99843 * 26 25 24 44 44 H 1.09007 * 109.46708 * 29.99491 * 26 25 24 45 45 H 1.09001 * 109.47073 * 149.99151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5747 1.6399 -1.4356 5 1 3.0344 0.8158 -1.9811 6 6 3.3456 2.9673 -1.5512 7 6 2.4614 3.2587 -2.7772 8 7 1.4933 2.3155 -2.1789 9 6 0.1387 2.1389 -2.2743 10 1 -0.3487 1.3741 -1.6879 11 6 -0.6079 2.9430 -3.1245 12 7 -0.0138 3.8755 -3.8387 13 14 -2.4557 2.7026 -3.2541 14 1 -3.1379 3.5582 -2.2501 15 1 -2.9098 3.0804 -4.6166 16 1 -2.7887 1.2782 -2.9985 17 6 2.1389 -1.1672 0.0005 18 8 3.3501 -1.1693 0.0964 19 6 1.4019 -2.4493 -0.1162 20 6 1.9645 -3.7468 -0.2301 21 6 0.8752 -4.5692 -0.3110 22 6 0.8846 -6.0415 -0.4466 23 6 -0.2502 -6.8756 -0.5233 24 6 0.1802 -8.1497 -0.6413 25 7 1.5310 -8.1368 -0.6401 26 6 2.4017 -9.3099 -0.7493 27 7 1.9551 -6.8075 -0.5181 28 8 -0.2062 -3.7738 -0.2368 29 7 0.1008 -2.6096 -0.1299 30 1 -0.3634 -0.5648 0.8585 31 1 -0.3633 1.0259 0.0598 32 1 -0.3633 -0.4611 -0.9184 33 1 1.5687 2.0513 0.4244 34 1 3.1028 1.1657 0.5984 35 1 3.1763 3.6473 -0.7163 36 1 4.4019 2.8420 -1.7896 37 1 2.1023 4.2867 -2.8256 38 1 2.8877 2.9123 -3.7187 39 1 -0.5355 4.4376 -4.4326 40 1 3.0090 -4.0207 -0.2506 41 1 -1.2802 -6.5524 -0.4929 42 1 -0.4459 -9.0260 -0.7225 43 1 2.6176 -9.6961 0.2469 44 1 1.9018 -10.0800 -1.3370 45 1 3.3333 -9.0266 -1.2391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085613711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:54 Heat of formation + Delta-G solvation = 167.765165 kcal Electronic energy + Delta-G solvation = -29736.841288 eV Core-core repulsion = 25569.040487 eV Total energy + Delta-G solvation = -4167.800801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -46.25340 -42.14165 -41.13574 -39.48909 -36.65140 -35.41976 -34.89281 -34.25028 -32.60479 -31.17188 -30.36920 -29.65443 -27.92023 -27.66968 -25.86992 -25.26263 -24.41828 -23.85832 -22.42992 -21.83787 -20.92904 -20.10110 -19.08054 -18.90471 -18.64201 -18.16164 -17.43553 -17.25944 -16.87450 -16.58012 -16.39946 -15.88729 -15.71704 -15.38966 -15.02642 -14.78187 -14.70289 -14.64325 -14.13103 -13.87636 -13.74333 -13.65486 -13.32882 -13.24694 -13.12004 -12.92287 -12.74248 -12.66933 -12.52435 -12.23805 -11.87123 -11.86514 -11.69746 -11.53890 -11.49929 -11.36565 -11.21234 -10.82111 -10.09301 -9.79412 -9.52811 -8.87444 -7.85153 -5.16993 -0.34232 0.16069 1.03168 1.09837 1.44795 1.46527 1.54069 1.63722 1.86507 1.98189 2.02731 2.48454 2.66441 3.16516 3.31571 3.42128 3.59154 3.70377 3.82625 3.94408 4.09284 4.16381 4.17267 4.24225 4.34021 4.48288 4.52574 4.54149 4.61555 4.65164 4.67551 4.74550 4.78844 4.84273 4.87134 4.92305 4.97625 5.04317 5.31724 5.35705 5.38367 5.61537 5.69340 5.96802 6.04545 6.13333 6.43028 6.70594 6.89747 6.96767 7.67416 8.63505 9.33029 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002612 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.449261 B =10716.961292 C =11874.933954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.587 5.587 3 C 0.125 3.875 4 C 0.127 3.873 5 H 0.027 0.973 6 C -0.128 4.128 7 C 0.152 3.848 8 N -0.625 5.625 9 C -0.224 4.224 10 H 0.103 0.897 11 C -0.074 4.074 12 N -0.958 5.958 13 Si 0.964 3.036 14 H -0.281 1.281 15 H -0.302 1.302 16 H -0.267 1.267 17 C 0.590 3.410 18 O -0.553 6.553 19 C -0.036 4.036 20 C -0.153 4.153 21 C 0.051 3.949 22 C 0.112 3.888 23 C -0.262 4.262 24 C 0.077 3.923 25 N -0.362 5.362 26 C 0.088 3.912 27 N -0.298 5.298 28 O 0.148 5.852 29 N -0.323 5.323 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.244 0.756 40 H 0.188 0.812 41 H 0.172 0.828 42 H 0.231 0.769 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -27.781 10.281 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.318 5.318 3 C 0.002 3.998 4 C 0.020 3.980 5 H 0.044 0.956 6 C -0.167 4.167 7 C 0.027 3.973 8 N -0.352 5.352 9 C -0.352 4.352 10 H 0.121 0.879 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.793 3.207 14 H -0.208 1.208 15 H -0.229 1.229 16 H -0.192 1.192 17 C 0.377 3.623 18 O -0.431 6.431 19 C -0.193 4.193 20 C -0.178 4.178 21 C -0.014 4.014 22 C -0.050 4.050 23 C -0.291 4.291 24 C -0.069 4.069 25 N -0.146 5.146 26 C -0.051 4.051 27 N -0.127 5.127 28 O 0.068 5.932 29 N -0.021 5.021 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.206 0.794 41 H 0.190 0.810 42 H 0.248 0.752 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.808 -26.939 10.307 28.901 hybrid contribution -1.056 0.068 -0.930 1.409 sum 0.752 -26.872 9.377 28.471 Atomic orbital electron populations 1.22051 0.77677 1.03702 1.01822 1.47752 1.08373 1.05594 1.70044 1.21968 0.97518 0.83323 0.96969 1.22681 0.88491 0.94655 0.92159 0.95596 1.23561 0.98125 0.95968 0.99051 1.22134 0.87375 0.94729 0.93068 1.46617 1.01254 1.35300 1.51991 1.19856 0.81769 1.14274 1.19319 0.87921 1.25597 1.01931 0.99448 0.99621 1.70031 1.35243 1.24187 1.31294 0.85278 0.80788 0.78211 0.76442 1.20821 1.22863 1.19179 1.17091 0.86007 0.82125 0.77113 1.90734 1.13528 1.86945 1.51876 1.23267 0.90357 0.96752 1.08936 1.22663 1.01914 0.88696 1.04480 1.21010 0.85138 0.90857 1.04417 1.18856 0.93791 0.87449 1.04950 1.21897 0.99955 0.91943 1.15303 1.23275 0.84241 1.00492 0.98874 1.48987 1.06518 1.05042 1.54079 1.22380 0.94984 0.82572 1.05123 1.77607 1.21388 0.88988 1.24673 1.84866 1.32338 1.11174 1.64790 1.74402 1.15477 0.96588 1.15622 0.90311 0.89302 0.92977 0.88701 0.88633 0.88718 0.89948 0.93688 0.97448 0.94700 0.79426 0.81004 0.75249 0.88880 0.85449 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 7.32 127.77 0.93 4.03 16 2 N -0.59 -21.68 2.89 -849.60 -2.45 -24.13 16 3 C 0.12 4.55 5.26 86.38 0.45 5.00 16 4 C 0.13 5.40 4.50 45.09 0.20 5.60 16 5 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 6 C -0.13 -4.87 7.86 31.25 0.25 -4.62 16 7 C 0.15 7.52 7.47 86.44 0.65 8.16 16 8 N -0.63 -32.20 3.59 -690.87 -2.48 -34.68 16 9 C -0.22 -12.26 10.29 84.03 0.87 -11.40 16 10 H 0.10 5.19 3.82 -2.91 -0.01 5.17 16 11 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 12 N -0.96 -58.97 11.46 21.65 0.25 -58.72 16 13 Si 0.96 46.00 29.55 68.60 2.03 48.02 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.59 22.36 7.65 86.94 0.67 23.03 16 18 O -0.55 -22.90 16.59 -3.71 -0.06 -22.96 16 19 C -0.04 -1.23 6.92 42.85 0.30 -0.93 16 20 C -0.15 -4.53 10.95 22.82 0.25 -4.28 16 21 C 0.05 1.33 7.35 24.46 0.18 1.51 16 22 C 0.11 2.53 7.11 42.38 0.30 2.83 16 23 C -0.26 -4.06 10.77 22.21 0.24 -3.82 16 24 C 0.08 0.72 11.46 83.45 0.96 1.67 16 25 N -0.36 -4.76 4.01 -369.70 -1.48 -6.25 16 26 C 0.09 0.32 11.46 127.77 1.46 1.78 16 27 N -0.30 -6.66 12.60 -48.36 -0.61 -7.27 16 28 O 0.15 4.03 11.20 67.70 0.76 4.79 16 29 N -0.32 -10.19 8.83 -49.00 -0.43 -10.62 16 30 H 0.08 2.36 7.29 -2.39 -0.02 2.34 16 31 H 0.09 3.13 6.42 -2.39 -0.02 3.11 16 32 H 0.05 1.97 6.86 -2.39 -0.02 1.95 16 33 H 0.09 3.35 7.78 -2.39 -0.02 3.33 16 34 H 0.10 3.19 7.53 -2.39 -0.02 3.17 16 35 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.04 2.43 7.28 -2.38 -0.02 2.41 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.24 14.73 8.31 -92.71 -0.77 13.95 16 40 H 0.19 5.25 8.06 -2.91 -0.02 5.23 16 41 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.23 -0.30 8.06 -2.91 -0.02 -0.33 16 43 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.13 -0.42 8.14 -2.38 -0.02 -0.44 16 45 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -79.45 380.32 4.72 -74.73 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.03 Total: 12.26 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 8.17 Total: 24.81 kcal Atomic # 7 Polarization: -134.45 SS G_CDS: -7.21 Total: -141.66 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.70 Total: -18.17 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -79.45 4.72 -74.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085613711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.495 kcal (2) G-P(sol) polarization free energy of solvation -79.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds