Wall clock time and date at job start Wed Apr 1 2020 03:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99817 * 2 1 4 4 C 1.53002 * 109.47259 * 275.26718 * 3 2 1 5 5 H 1.09007 * 112.96199 * 66.53350 * 4 3 2 6 6 C 1.53939 * 113.77422 * 294.85424 * 4 3 2 7 7 C 1.53943 * 86.29022 * 222.08874 * 6 4 3 8 8 N 1.47585 * 113.77234 * 198.20646 * 4 3 2 9 9 C 1.36931 * 134.48985 * 318.93751 * 8 4 3 10 10 H 1.08004 * 120.00184 * 5.83408 * 9 8 4 11 11 C 1.38814 * 120.00010 * 185.82677 * 9 8 4 12 12 N 1.31626 * 119.99897 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00439 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47210 * 59.99969 * 13 11 9 15 15 H 1.48496 * 109.47393 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47080 * 300.00028 * 13 11 9 17 17 C 1.34776 * 120.00377 * 180.02562 * 2 1 3 18 18 O 1.21543 * 120.00566 * 184.93548 * 17 2 1 19 19 C 1.47914 * 119.99945 * 4.93101 * 17 2 1 20 20 C 1.39607 * 121.00674 * 310.52213 * 19 17 2 21 21 C 1.39080 * 119.23619 * 179.97438 * 20 19 17 22 22 O 1.35728 * 119.27507 * 180.02562 * 21 20 19 23 23 N 1.31867 * 121.44954 * 359.97229 * 21 20 19 24 24 C 1.33080 * 121.83234 * 0.04905 * 23 21 20 25 25 N 1.35721 * 133.20844 * 179.97438 * 24 23 21 26 26 C 1.30198 * 109.68459 * 179.97438 * 25 24 23 27 27 N 1.35973 * 110.07637 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.36338 * 180.02562 * 27 26 25 29 29 C 1.37609 * 107.26933 * 0.02562 * 27 26 25 30 30 H 1.09001 * 109.47412 * 264.50951 * 1 2 3 31 31 H 1.09000 * 109.47284 * 24.51060 * 1 2 3 32 32 H 1.09004 * 109.47010 * 144.51140 * 1 2 3 33 33 H 1.09003 * 109.47283 * 35.27149 * 3 2 1 34 34 H 1.09006 * 109.47296 * 155.27354 * 3 2 1 35 35 H 1.09004 * 113.73925 * 336.43533 * 6 4 3 36 36 H 1.09001 * 113.74141 * 107.63297 * 6 4 3 37 37 H 1.09004 * 113.76612 * 137.90827 * 7 6 4 38 38 H 1.08999 * 113.77053 * 269.19266 * 7 6 4 39 39 H 0.96994 * 120.00223 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.38440 * 359.70505 * 20 19 17 41 41 H 0.96697 * 114.00671 * 89.99485 * 22 21 20 42 42 H 1.08003 * 124.96150 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.46657 * 272.78766 * 28 27 26 44 44 H 1.08997 * 109.47115 * 32.79280 * 28 27 26 45 45 H 1.09001 * 109.46731 * 152.79357 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3377 1.7767 -1.4364 5 1 1.3838 2.0560 -1.8838 6 6 3.2022 0.8719 -2.3329 7 6 3.8169 2.1722 -2.8816 8 7 3.3950 2.7920 -1.6078 9 6 3.8152 3.8723 -0.8788 10 1 3.3880 4.0666 0.0940 11 6 4.7903 4.7177 -1.3900 12 7 5.3106 4.4812 -2.5757 13 14 5.3641 6.1910 -0.3953 14 1 5.9332 5.7259 0.8950 15 1 6.4030 6.9288 -1.1578 16 1 4.2117 7.0901 -0.1326 17 6 2.1389 -1.1672 -0.0005 18 8 3.3510 -1.1692 0.0900 19 6 1.4035 -2.4457 -0.1112 20 6 0.3062 -2.7175 0.7080 21 6 -0.3587 -3.9315 0.5722 22 8 -1.4260 -4.1963 1.3678 23 7 0.0243 -4.8305 -0.3132 24 6 1.0633 -4.6240 -1.1188 25 7 1.6478 -5.3691 -2.0910 26 6 2.6535 -4.7165 -2.5988 27 7 2.7825 -3.5086 -1.9877 28 6 3.7938 -2.4902 -2.2813 29 6 1.7864 -3.4207 -1.0423 30 1 -0.3634 -0.0983 1.0229 31 1 -0.3634 0.9350 -0.4263 32 1 -0.3633 -0.8368 -0.5966 33 1 1.6525 2.0029 0.5934 34 1 3.1875 1.1167 0.4299 35 1 3.9080 0.2519 -1.7801 36 1 2.6299 0.3095 -3.0707 37 1 4.8981 2.1261 -3.0121 38 1 3.2995 2.5683 -3.7554 39 1 5.9923 5.0717 -2.9327 40 1 -0.0200 -1.9952 1.4416 41 1 -2.2728 -3.9114 0.9979 42 1 3.2915 -5.0809 -3.3903 43 1 4.6893 -2.6870 -1.6918 44 1 4.0431 -2.5209 -3.3420 45 1 3.4015 -1.5052 -2.0286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085638149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:39 Heat of formation + Delta-G solvation = 97.757502 kcal Electronic energy + Delta-G solvation = -31140.695652 eV Core-core repulsion = 26969.859090 eV Total energy + Delta-G solvation = -4170.836562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.73458 -40.20723 -39.41079 -37.86479 -36.52352 -35.52383 -34.50302 -32.52055 -32.09108 -29.54835 -28.71415 -28.00635 -27.22690 -26.82018 -24.77478 -23.48297 -23.20696 -22.82911 -21.45522 -19.72748 -19.19437 -18.74536 -18.23363 -17.42708 -17.15587 -16.71902 -16.54086 -15.99029 -15.82149 -15.43257 -14.99571 -14.75542 -14.51668 -14.20484 -13.94524 -13.78721 -13.64016 -13.51946 -13.39216 -12.73972 -12.47639 -12.34594 -12.18643 -12.09704 -11.87547 -11.49940 -11.17385 -11.04692 -10.98715 -10.94366 -10.74684 -10.57990 -10.32235 -9.99346 -9.84499 -9.62836 -9.38862 -8.97457 -8.87203 -8.71278 -8.56303 -6.94951 -5.83285 -3.15738 0.19516 0.82339 2.11408 2.25353 2.56502 2.82170 3.03821 3.35314 3.39720 3.40851 3.47193 3.86809 4.06772 4.26139 4.40899 4.49854 4.64326 4.80680 4.85859 4.92567 5.09185 5.14909 5.20786 5.32053 5.33440 5.39921 5.46168 5.51111 5.56137 5.70198 5.77715 5.84670 5.96811 5.98007 6.16001 6.30140 6.45423 6.56785 6.63175 6.67038 7.08802 7.15942 7.21147 7.35936 7.36557 7.49659 7.71571 7.90767 7.96272 8.97516 9.64732 10.53199 11.34296 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003057 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.019427 B = 9157.574855 C =10226.498823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.595 5.595 3 C 0.112 3.888 4 C 0.129 3.871 5 H 0.043 0.957 6 C -0.166 4.166 7 C 0.167 3.833 8 N -0.598 5.598 9 C -0.227 4.227 10 H 0.079 0.921 11 C -0.004 4.004 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.555 3.445 18 O -0.517 6.517 19 C -0.044 4.044 20 C -0.146 4.146 21 C 0.326 3.674 22 O -0.474 6.474 23 N -0.455 5.455 24 C 0.272 3.728 25 N -0.488 5.488 26 C 0.291 3.709 27 N -0.474 5.474 28 C 0.063 3.937 29 C 0.025 3.975 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.255 0.745 40 H 0.157 0.843 41 H 0.401 0.599 42 H 0.227 0.773 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 -14.930 1.214 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C -0.011 4.011 4 C 0.020 3.980 5 H 0.060 0.940 6 C -0.205 4.205 7 C 0.042 3.958 8 N -0.324 5.324 9 C -0.355 4.355 10 H 0.096 0.904 11 C -0.201 4.201 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.341 3.659 18 O -0.393 6.393 19 C -0.058 4.058 20 C -0.169 4.169 21 C 0.135 3.865 22 O -0.281 6.281 23 N -0.176 5.176 24 C 0.029 3.971 25 N -0.208 5.208 26 C 0.003 3.997 27 N -0.161 5.161 28 C -0.078 4.078 29 C -0.090 4.090 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.174 0.826 41 H 0.259 0.741 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.375 -16.299 1.357 19.369 hybrid contribution 0.479 2.678 0.431 2.754 sum -9.896 -13.622 1.788 16.931 Atomic orbital electron populations 1.22020 0.79600 1.03786 1.01769 1.47746 1.07081 1.06135 1.71792 1.21970 0.98049 0.81921 0.99149 1.22494 0.93137 0.89735 0.92600 0.93996 1.23959 0.99583 0.98026 0.98891 1.22112 0.99360 0.85837 0.88461 1.45980 1.33516 1.30583 1.22354 1.18924 1.17581 1.00882 0.98074 0.90364 1.24795 0.99725 0.98883 0.96705 1.69813 1.30422 1.39189 1.17145 0.86238 0.78164 0.82487 0.79091 1.21012 1.21552 1.21168 1.18055 0.87157 0.83097 0.77589 1.90839 1.12934 1.86745 1.48768 1.19148 0.96268 0.94282 0.96077 1.22154 0.95818 0.98009 1.00917 1.18479 0.90971 0.87596 0.89447 1.84855 1.16477 1.84879 1.41842 1.65831 1.14497 1.33042 1.04222 1.18899 0.93298 0.88899 0.96032 1.70386 1.09340 1.29991 1.11128 1.25707 0.95403 0.81158 0.97417 1.45254 1.25006 1.16889 1.28989 1.22635 0.90794 0.91729 1.02641 1.19444 0.94544 0.99021 0.95981 0.92087 0.90100 0.91311 0.90783 0.88423 0.89760 0.93944 0.91523 0.95465 0.93546 0.82554 0.74121 0.75674 0.89502 0.89161 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.12 59.84 0.55 1.17 16 2 N -0.60 -7.70 2.79 -182.67 -0.51 -8.21 16 3 C 0.11 1.81 5.41 -4.04 -0.02 1.79 16 4 C 0.13 2.40 4.57 -66.86 -0.31 2.09 16 5 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.17 -2.98 6.08 -25.80 -0.16 -3.14 16 7 C 0.17 3.79 7.39 -2.85 -0.02 3.77 16 8 N -0.60 -14.46 3.58 -169.73 -0.61 -15.07 16 9 C -0.23 -6.07 10.51 -15.06 -0.16 -6.23 16 10 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 11 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 12 N -0.92 -26.63 11.56 55.49 0.64 -25.98 16 13 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.55 7.89 5.63 -12.30 -0.07 7.82 16 18 O -0.52 -8.89 12.88 5.33 0.07 -8.82 16 19 C -0.04 -0.56 4.90 -104.71 -0.51 -1.07 16 20 C -0.15 -1.52 7.83 -38.76 -0.30 -1.82 16 21 C 0.33 3.71 7.71 -17.22 -0.13 3.58 16 22 O -0.47 -4.18 13.55 -18.89 -0.26 -4.44 16 23 N -0.46 -6.51 10.41 -12.77 -0.13 -6.64 16 24 C 0.27 3.95 8.37 -156.98 -1.31 2.63 16 25 N -0.49 -6.58 11.27 -13.60 -0.15 -6.73 16 26 C 0.29 2.86 12.50 -89.77 -1.12 1.74 16 27 N -0.47 -5.45 3.19 -122.88 -0.39 -5.84 16 28 C 0.06 0.66 9.83 59.85 0.59 1.25 16 29 C 0.03 0.34 6.79 -83.67 -0.57 -0.23 16 30 H 0.06 0.40 7.14 -51.93 -0.37 0.03 16 31 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 32 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 33 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.10 1.87 7.21 -51.93 -0.37 1.50 16 35 H 0.08 1.56 5.56 -51.93 -0.29 1.27 16 36 H 0.04 0.66 8.01 -51.93 -0.42 0.24 16 37 H 0.07 1.67 7.45 -51.93 -0.39 1.28 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.16 1.22 6.44 -52.49 -0.34 0.88 16 41 H 0.40 1.33 9.06 45.56 0.41 1.75 16 42 H 0.23 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.11 1.39 2.64 -51.93 -0.14 1.25 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -36.62 364.97 -9.24 -45.86 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.72 Total: 0.65 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: -3.65 Total: 13.15 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -1.16 Total: -68.47 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.19 Total: -13.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.62 -9.24 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085638149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.615 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds