Wall clock time and date at job start Wed Apr 1 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99817 * 2 1 4 4 C 1.53002 * 109.47259 * 275.26718 * 3 2 1 5 5 H 1.09007 * 112.96199 * 66.53350 * 4 3 2 6 6 C 1.53939 * 113.77422 * 294.85424 * 4 3 2 7 7 C 1.53943 * 86.29022 * 222.08874 * 6 4 3 8 8 N 1.47585 * 113.77234 * 198.20646 * 4 3 2 9 9 C 1.36931 * 134.48985 * 318.93751 * 8 4 3 10 10 H 1.08004 * 120.00184 * 5.83408 * 9 8 4 11 11 C 1.38814 * 120.00010 * 185.82677 * 9 8 4 12 12 N 1.31626 * 119.99897 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00439 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47210 * 59.99969 * 13 11 9 15 15 H 1.48496 * 109.47393 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47080 * 300.00028 * 13 11 9 17 17 C 1.34776 * 120.00377 * 180.02562 * 2 1 3 18 18 O 1.21543 * 120.00566 * 184.93548 * 17 2 1 19 19 C 1.47914 * 119.99945 * 4.93101 * 17 2 1 20 20 C 1.39607 * 121.00674 * 310.52213 * 19 17 2 21 21 C 1.39080 * 119.23619 * 179.97438 * 20 19 17 22 22 O 1.35728 * 119.27507 * 180.02562 * 21 20 19 23 23 N 1.31867 * 121.44954 * 359.97229 * 21 20 19 24 24 C 1.33080 * 121.83234 * 0.04905 * 23 21 20 25 25 N 1.35721 * 133.20844 * 179.97438 * 24 23 21 26 26 C 1.30198 * 109.68459 * 179.97438 * 25 24 23 27 27 N 1.35973 * 110.07637 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.36338 * 180.02562 * 27 26 25 29 29 C 1.37609 * 107.26933 * 0.02562 * 27 26 25 30 30 H 1.09001 * 109.47412 * 264.50951 * 1 2 3 31 31 H 1.09000 * 109.47284 * 24.51060 * 1 2 3 32 32 H 1.09004 * 109.47010 * 144.51140 * 1 2 3 33 33 H 1.09003 * 109.47283 * 35.27149 * 3 2 1 34 34 H 1.09006 * 109.47296 * 155.27354 * 3 2 1 35 35 H 1.09004 * 113.73925 * 336.43533 * 6 4 3 36 36 H 1.09001 * 113.74141 * 107.63297 * 6 4 3 37 37 H 1.09004 * 113.76612 * 137.90827 * 7 6 4 38 38 H 1.08999 * 113.77053 * 269.19266 * 7 6 4 39 39 H 0.96994 * 120.00223 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.38440 * 359.70505 * 20 19 17 41 41 H 0.96697 * 114.00671 * 89.99485 * 22 21 20 42 42 H 1.08003 * 124.96150 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.46657 * 272.78766 * 28 27 26 44 44 H 1.08997 * 109.47115 * 32.79280 * 28 27 26 45 45 H 1.09001 * 109.46731 * 152.79357 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3377 1.7767 -1.4364 5 1 1.3838 2.0560 -1.8838 6 6 3.2022 0.8719 -2.3329 7 6 3.8169 2.1722 -2.8816 8 7 3.3950 2.7920 -1.6078 9 6 3.8152 3.8723 -0.8788 10 1 3.3880 4.0666 0.0940 11 6 4.7903 4.7177 -1.3900 12 7 5.3106 4.4812 -2.5757 13 14 5.3641 6.1910 -0.3953 14 1 5.9332 5.7259 0.8950 15 1 6.4030 6.9288 -1.1578 16 1 4.2117 7.0901 -0.1326 17 6 2.1389 -1.1672 -0.0005 18 8 3.3510 -1.1692 0.0900 19 6 1.4035 -2.4457 -0.1112 20 6 0.3062 -2.7175 0.7080 21 6 -0.3587 -3.9315 0.5722 22 8 -1.4260 -4.1963 1.3678 23 7 0.0243 -4.8305 -0.3132 24 6 1.0633 -4.6240 -1.1188 25 7 1.6478 -5.3691 -2.0910 26 6 2.6535 -4.7165 -2.5988 27 7 2.7825 -3.5086 -1.9877 28 6 3.7938 -2.4902 -2.2813 29 6 1.7864 -3.4207 -1.0423 30 1 -0.3634 -0.0983 1.0229 31 1 -0.3634 0.9350 -0.4263 32 1 -0.3633 -0.8368 -0.5966 33 1 1.6525 2.0029 0.5934 34 1 3.1875 1.1167 0.4299 35 1 3.9080 0.2519 -1.7801 36 1 2.6299 0.3095 -3.0707 37 1 4.8981 2.1261 -3.0121 38 1 3.2995 2.5683 -3.7554 39 1 5.9923 5.0717 -2.9327 40 1 -0.0200 -1.9952 1.4416 41 1 -2.2728 -3.9114 0.9979 42 1 3.2915 -5.0809 -3.3903 43 1 4.6893 -2.6870 -1.6918 44 1 4.0431 -2.5209 -3.3420 45 1 3.4015 -1.5052 -2.0286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085638149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:38 Heat of formation + Delta-G solvation = 70.058122 kcal Electronic energy + Delta-G solvation = -31141.896787 eV Core-core repulsion = 26969.859090 eV Total energy + Delta-G solvation = -4172.037697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59646 -41.29640 -40.29327 -39.42108 -37.31328 -36.63469 -35.39031 -34.26393 -33.27451 -30.42481 -29.92572 -29.87466 -28.11010 -27.71359 -25.84203 -25.26388 -24.13079 -24.09686 -22.52392 -20.90214 -20.57121 -19.67066 -19.08896 -18.67316 -18.26944 -17.99253 -17.54101 -17.17885 -16.92992 -16.52023 -16.24783 -15.91999 -15.78864 -15.39470 -15.18975 -14.90433 -14.71403 -14.40722 -14.26900 -14.15851 -13.86346 -13.39038 -13.20142 -13.15963 -12.90808 -12.84248 -12.74300 -12.55993 -12.45397 -12.31502 -11.98364 -11.84738 -11.79508 -11.60579 -11.41095 -11.26114 -10.83340 -10.32465 -9.87200 -9.75132 -9.55651 -8.88559 -7.89539 -5.21607 -0.68117 -0.03432 1.21908 1.45103 1.45641 1.48591 1.53854 1.57613 1.82156 2.24939 2.49000 2.57300 2.98019 3.28600 3.29834 3.37556 3.49174 3.67576 3.84304 3.92346 4.06694 4.08870 4.17887 4.24218 4.29861 4.33889 4.45990 4.50256 4.60990 4.68304 4.72431 4.77230 4.85358 4.90493 4.93918 5.01641 5.07893 5.19780 5.22395 5.41505 5.54511 5.69621 5.91085 5.94357 6.21621 6.35820 6.71092 6.87733 6.90062 6.92791 7.63152 8.58474 9.28317 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003057 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.019427 B = 9157.574855 C =10226.498823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.590 5.590 3 C 0.127 3.873 4 C 0.132 3.868 5 H 0.059 0.941 6 C -0.135 4.135 7 C 0.161 3.839 8 N -0.627 5.627 9 C -0.228 4.228 10 H 0.087 0.913 11 C -0.068 4.068 12 N -0.955 5.955 13 Si 0.973 3.027 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.275 1.275 17 C 0.557 3.443 18 O -0.553 6.553 19 C -0.053 4.053 20 C -0.129 4.129 21 C 0.333 3.667 22 O -0.477 6.477 23 N -0.488 5.488 24 C 0.251 3.749 25 N -0.525 5.525 26 C 0.308 3.692 27 N -0.478 5.478 28 C 0.066 3.934 29 C 0.006 3.994 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.019 0.981 39 H 0.247 0.753 40 H 0.186 0.814 41 H 0.426 0.574 42 H 0.276 0.724 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 -15.510 1.995 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.321 5.321 3 C 0.004 3.996 4 C 0.026 3.974 5 H 0.076 0.924 6 C -0.173 4.173 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.356 4.356 10 H 0.105 0.895 11 C -0.261 4.261 12 N -0.604 5.604 13 Si 0.802 3.198 14 H -0.205 1.205 15 H -0.225 1.225 16 H -0.201 1.201 17 C 0.344 3.656 18 O -0.432 6.432 19 C -0.067 4.067 20 C -0.152 4.152 21 C 0.142 3.858 22 O -0.287 6.287 23 N -0.210 5.210 24 C 0.008 3.992 25 N -0.247 5.247 26 C 0.021 3.979 27 N -0.165 5.165 28 C -0.075 4.075 29 C -0.109 4.109 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.203 0.797 41 H 0.287 0.713 42 H 0.291 0.709 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.460 -16.895 2.159 21.103 hybrid contribution 0.988 2.762 0.213 2.941 sum -11.472 -14.133 2.372 18.357 Atomic orbital electron populations 1.22350 0.76637 1.04829 1.04040 1.47714 1.08705 1.04509 1.71182 1.21524 0.97290 0.83652 0.97179 1.22672 0.92510 0.87798 0.94446 0.92383 1.23651 0.98899 0.96048 0.98675 1.22048 0.97501 0.88677 0.88202 1.46323 1.35568 1.30799 1.22695 1.19353 1.16772 1.00938 0.98545 0.89510 1.25594 1.00673 1.01861 0.97928 1.70000 1.31333 1.40158 1.18903 0.85230 0.77564 0.79418 0.77611 1.20456 1.22455 1.20103 1.18256 0.86738 0.83735 0.76826 1.90825 1.14663 1.87283 1.50428 1.19088 0.97089 0.93497 0.97016 1.22379 0.94408 0.98071 1.00292 1.18628 0.91359 0.87252 0.88545 1.84815 1.17282 1.85029 1.41566 1.65842 1.15239 1.34520 1.05417 1.19133 0.93839 0.89575 0.96667 1.70366 1.11007 1.31190 1.12100 1.26673 0.94381 0.79934 0.96922 1.45409 1.24767 1.17542 1.28787 1.22617 0.89959 0.90286 1.04618 1.19617 0.95340 0.99049 0.96891 0.89179 0.89240 0.90163 0.89320 0.91718 0.90306 0.90849 0.94956 0.96361 0.94445 0.79655 0.71253 0.70912 0.90255 0.85723 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 9.12 127.77 1.17 2.03 16 2 N -0.59 -13.86 2.79 -850.11 -2.37 -16.24 16 3 C 0.13 3.93 5.41 86.38 0.47 4.40 16 4 C 0.13 4.77 4.57 45.09 0.21 4.97 16 5 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 6 C -0.13 -4.72 6.08 31.25 0.19 -4.53 16 7 C 0.16 7.44 7.39 86.44 0.64 8.08 16 8 N -0.63 -30.46 3.58 -690.90 -2.47 -32.94 16 9 C -0.23 -12.23 10.51 84.03 0.88 -11.34 16 10 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 11 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 12 N -0.95 -57.08 11.56 21.65 0.25 -56.83 16 13 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 17 C 0.56 15.03 5.63 86.81 0.49 15.52 16 18 O -0.55 -18.93 12.88 -3.85 -0.05 -18.98 16 19 C -0.05 -1.26 4.90 -19.92 -0.10 -1.36 16 20 C -0.13 -2.34 7.83 22.80 0.18 -2.16 16 21 C 0.33 6.89 7.71 84.89 0.65 7.55 16 22 O -0.48 -7.12 13.55 -90.51 -1.23 -8.35 16 23 N -0.49 -13.50 10.41 -307.36 -3.20 -16.70 16 24 C 0.25 7.09 8.37 134.30 1.12 8.22 16 25 N -0.53 -13.68 11.27 -196.93 -2.22 -15.90 16 26 C 0.31 5.45 12.50 180.05 2.25 7.71 16 27 N -0.48 -10.30 3.19 -542.69 -1.73 -12.03 16 28 C 0.07 1.30 9.83 127.77 1.26 2.56 16 29 C 0.01 0.17 6.79 39.28 0.27 0.43 16 30 H 0.09 0.76 7.14 -2.39 -0.02 0.74 16 31 H 0.09 1.13 8.03 -2.39 -0.02 1.11 16 32 H 0.08 0.97 6.30 -2.38 -0.02 0.95 16 33 H 0.09 2.48 8.11 -2.39 -0.02 2.46 16 34 H 0.06 2.47 7.21 -2.38 -0.02 2.45 16 35 H 0.08 2.91 5.56 -2.38 -0.01 2.90 16 36 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 37 H 0.03 1.69 7.45 -2.38 -0.02 1.67 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.19 2.13 6.44 -2.91 -0.02 2.12 16 41 H 0.43 1.50 9.06 -74.06 -0.67 0.83 16 42 H 0.28 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 2.07 2.64 -2.39 -0.01 2.06 16 Total: -1.00 -83.44 364.97 -0.47 -83.90 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.39 Total: 8.33 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 10.14 Total: 38.75 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -11.75 Total: -150.64 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.28 Total: -27.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -83.44 -0.47 -83.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085638149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.961 kcal (2) G-P(sol) polarization free energy of solvation -83.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds