Wall clock time and date at job start Wed Apr 1 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99668 * 2 1 4 4 C 1.53003 * 109.47171 * 276.05975 * 3 2 1 5 5 H 1.09003 * 112.96494 * 67.26400 * 4 3 2 6 6 C 1.53944 * 113.76795 * 295.58285 * 4 3 2 7 7 C 1.53940 * 86.28898 * 222.09085 * 6 4 3 8 8 N 1.47578 * 113.76824 * 199.08732 * 4 3 2 9 9 C 1.36936 * 134.50029 * 318.94179 * 8 4 3 10 10 H 1.08009 * 119.99124 * 5.34813 * 9 8 4 11 11 C 1.38806 * 120.00671 * 185.34895 * 9 8 4 12 12 N 1.31620 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00035 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47198 * 59.99832 * 13 11 9 15 15 H 1.48502 * 109.47053 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47168 * 299.99365 * 13 11 9 17 17 C 1.34772 * 120.00269 * 179.97438 * 2 1 3 18 18 O 1.21669 * 120.00080 * 184.20223 * 17 2 1 19 19 C 1.46902 * 120.00094 * 4.20534 * 17 2 1 20 20 C 1.36385 * 126.75943 * 323.87051 * 19 17 2 21 21 N 1.35449 * 109.77162 * 180.02562 * 20 19 17 22 22 C 1.46504 * 124.79364 * 179.97438 * 21 20 19 23 23 C 1.38057 * 110.41477 * 359.97438 * 21 20 19 24 24 C 1.39114 * 133.15649 * 180.28336 * 23 21 20 25 25 C 1.37756 * 119.96448 * 180.12738 * 24 23 21 26 26 C 1.38950 * 120.60567 * 359.53849 * 25 24 23 27 27 F 1.35102 * 119.87272 * 180.23107 * 26 25 24 28 28 C 1.37947 * 120.24861 * 0.25239 * 26 25 24 29 29 C 1.39288 * 119.64896 * 359.97438 * 28 26 25 30 30 H 1.09000 * 109.46997 * 265.13044 * 1 2 3 31 31 H 1.08995 * 109.47067 * 25.13698 * 1 2 3 32 32 H 1.09010 * 109.46648 * 145.13567 * 1 2 3 33 33 H 1.09001 * 109.47616 * 36.06053 * 3 2 1 34 34 H 1.09003 * 109.47539 * 156.05911 * 3 2 1 35 35 H 1.08996 * 113.74432 * 336.43543 * 6 4 3 36 36 H 1.09001 * 113.74111 * 107.64144 * 6 4 3 37 37 H 1.09004 * 113.77207 * 137.90972 * 7 6 4 38 38 H 1.09004 * 113.77345 * 269.18948 * 7 6 4 39 39 H 0.96994 * 120.00691 * 179.97438 * 12 11 9 40 40 H 1.07995 * 125.11910 * 0.07188 * 20 19 17 41 41 H 1.08999 * 109.46758 * 270.02292 * 22 21 20 42 42 H 1.08999 * 109.47227 * 30.02549 * 22 21 20 43 43 H 1.09000 * 109.46978 * 150.02508 * 22 21 20 44 44 H 1.08004 * 120.01924 * 359.97438 * 24 23 21 45 45 H 1.07995 * 119.69832 * 179.76634 * 25 24 23 46 46 H 1.07997 * 120.17338 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3206 1.7866 -1.4345 5 1 1.3629 2.0808 -1.8641 6 6 3.1596 0.8788 -2.3520 7 6 3.7809 2.1761 -2.9003 8 7 3.3893 2.7880 -1.6156 9 6 3.8377 3.8561 -0.8853 10 1 3.4244 4.0528 0.0930 11 6 4.8231 4.6858 -1.4022 12 7 5.3270 4.4458 -2.5942 13 14 5.4351 6.1423 -0.4054 14 1 6.0089 5.6591 0.8761 15 1 6.4806 6.8640 -1.1744 16 1 4.3028 7.0615 -0.1256 17 6 2.1390 -1.1671 0.0005 18 8 3.3532 -1.1685 0.0777 19 6 1.4075 -2.4377 -0.0922 20 6 0.1969 -2.7252 0.4662 21 7 -0.1566 -3.9974 0.1640 22 6 -1.3965 -4.6460 0.5979 23 6 0.8165 -4.5965 -0.6106 24 6 0.9361 -5.8608 -1.1784 25 6 2.0534 -6.1799 -1.9183 26 6 3.0633 -5.2457 -2.1132 27 9 4.1506 -5.5730 -2.8454 28 6 2.9602 -3.9856 -1.5616 29 6 1.8372 -3.6532 -0.8076 30 1 -0.3633 -0.0872 1.0240 31 1 -0.3633 0.9303 -0.4365 32 1 -0.3633 -0.8433 -0.5875 33 1 1.6597 1.9988 0.6049 34 1 3.1926 1.1139 0.4170 35 1 3.8667 0.2461 -1.8157 36 1 2.5688 0.3293 -3.0849 37 1 4.8592 2.1183 -3.0487 38 1 3.2543 2.5853 -3.7625 39 1 6.0153 5.0258 -2.9556 40 1 -0.3918 -2.0412 1.0595 41 1 -1.2323 -5.1395 1.5558 42 1 -2.1805 -3.8964 0.7050 43 1 -1.6990 -5.3847 -0.1443 44 1 0.1545 -6.5927 -1.0371 45 1 2.1435 -7.1640 -2.3539 46 1 3.7461 -3.2606 -1.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:03 Heat of formation + Delta-G solvation = 32.415706 kcal Electronic energy + Delta-G solvation = -30192.498136 eV Core-core repulsion = 25998.908180 eV Total energy + Delta-G solvation = -4193.589956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84238 -42.59710 -40.74201 -39.28265 -37.92014 -36.37343 -34.29324 -33.93045 -31.17434 -30.76046 -29.85638 -29.39314 -27.86889 -27.02569 -25.31256 -24.48958 -24.06626 -22.86929 -22.05375 -20.85027 -20.16732 -18.71322 -18.43126 -18.32373 -17.68017 -17.20661 -17.08541 -16.65866 -16.46580 -16.39158 -16.15100 -16.01369 -15.80702 -15.24609 -14.95191 -14.69099 -14.27097 -14.14236 -14.06575 -13.89062 -13.77309 -13.57515 -13.44191 -13.34602 -13.11396 -12.93929 -12.84190 -12.58344 -12.47119 -12.31762 -12.01911 -11.97410 -11.82974 -11.62414 -11.26765 -10.92234 -10.84489 -10.69356 -9.59911 -9.24608 -8.89037 -8.70890 -7.88829 -5.22222 -0.13852 0.30855 1.02695 1.43498 1.48866 1.54226 1.70219 1.94233 2.32071 2.50916 2.70369 3.25455 3.31208 3.41606 3.54916 3.66409 3.76655 3.89566 4.00412 4.11640 4.23780 4.29383 4.33472 4.38100 4.45216 4.49062 4.56362 4.58413 4.67355 4.70202 4.79880 4.85189 4.86669 4.95099 4.96195 4.99412 5.10212 5.16672 5.20530 5.22127 5.42660 5.50373 5.58346 5.60946 5.73775 5.93930 6.01420 6.20750 6.55033 6.91451 7.33826 7.62409 8.59311 9.29491 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002787 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.846771 B =10044.586112 C =11310.000831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.131 3.869 4 C 0.138 3.862 5 H 0.064 0.936 6 C -0.135 4.135 7 C 0.161 3.839 8 N -0.627 5.627 9 C -0.229 4.229 10 H 0.090 0.910 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.981 3.019 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.270 1.270 17 C 0.581 3.419 18 O -0.591 6.591 19 C -0.265 4.265 20 C 0.144 3.856 21 N -0.461 5.461 22 C 0.062 3.938 23 C 0.073 3.927 24 C -0.072 4.072 25 C -0.134 4.134 26 C 0.063 3.937 27 F -0.153 7.153 28 C -0.137 4.137 29 C -0.067 4.067 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.247 0.753 40 H 0.224 0.776 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.178 0.822 45 H 0.169 0.831 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.747 -24.874 7.464 35.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.335 5.335 3 C 0.007 3.993 4 C 0.031 3.969 5 H 0.081 0.919 6 C -0.173 4.173 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.357 4.357 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.808 3.192 14 H -0.205 1.205 15 H -0.223 1.223 16 H -0.196 1.196 17 C 0.372 3.628 18 O -0.472 6.472 19 C -0.275 4.275 20 C 0.011 3.989 21 N -0.140 5.140 22 C -0.077 4.077 23 C -0.032 4.032 24 C -0.091 4.091 25 C -0.154 4.154 26 C 0.043 3.957 27 F -0.132 7.132 28 C -0.157 4.157 29 C -0.072 4.072 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.241 0.759 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.195 0.805 45 H 0.186 0.814 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.245 -24.770 7.663 34.823 hybrid contribution 1.752 1.474 -0.278 2.306 sum -21.493 -23.296 7.385 32.545 Atomic orbital electron populations 1.22373 0.76882 1.04862 1.03592 1.47651 1.08544 1.04340 1.72935 1.21355 0.96986 0.84422 0.96585 1.22660 0.92200 0.87321 0.94698 0.91862 1.23486 0.99058 0.95949 0.98787 1.21998 0.97282 0.88735 0.88402 1.46263 1.35632 1.32293 1.21229 1.19418 1.16282 1.01797 0.98238 0.89264 1.25716 1.00567 1.02322 0.98035 1.70044 1.31341 1.40790 1.18674 0.85121 0.77661 0.78977 0.77405 1.20451 1.22320 1.19592 1.17768 0.86199 0.83660 0.75178 1.90787 1.16364 1.87871 1.52217 1.19798 0.99619 0.94001 1.14129 1.22819 0.93415 0.86121 0.96551 1.43942 1.18079 1.10533 1.41439 1.22554 0.82165 1.00451 1.02500 1.18391 0.90138 0.95124 0.99554 1.20261 0.98796 0.93236 0.96849 1.21078 0.92564 1.00143 1.01623 1.17678 0.86254 0.94485 0.97306 1.91454 1.53370 1.92969 1.75428 1.20428 0.98875 0.96035 1.00319 1.18666 0.94698 0.93831 1.00006 0.89253 0.89972 0.89353 0.89371 0.92958 0.92179 0.91421 0.95486 0.95976 0.94440 0.75949 0.89314 0.86581 0.87883 0.80454 0.81352 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 9.02 127.77 1.15 2.14 16 2 N -0.60 -17.44 2.78 -851.24 -2.37 -19.81 16 3 C 0.13 4.88 5.42 86.38 0.47 5.35 16 4 C 0.14 5.90 4.58 45.09 0.21 6.11 16 5 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 6 C -0.13 -6.11 7.29 31.25 0.23 -5.88 16 7 C 0.16 8.74 7.39 86.48 0.64 9.38 16 8 N -0.63 -34.53 3.57 -694.11 -2.48 -37.01 16 9 C -0.23 -13.44 10.51 84.03 0.88 -12.56 16 10 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 11 C -0.07 -4.46 5.50 84.86 0.47 -4.00 16 12 N -0.96 -61.96 11.53 21.65 0.25 -61.71 16 13 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 17 C 0.58 19.91 7.14 86.51 0.62 20.52 16 18 O -0.59 -27.18 15.32 -4.25 -0.07 -27.25 16 19 C -0.27 -6.89 5.56 -19.02 -0.11 -6.99 16 20 C 0.14 1.98 8.99 83.70 0.75 2.73 16 21 N -0.46 -4.93 3.15 -538.57 -1.69 -6.63 16 22 C 0.06 -0.03 10.99 127.77 1.40 1.38 16 23 C 0.07 1.29 6.79 38.89 0.26 1.55 16 24 C -0.07 -0.92 9.91 22.37 0.22 -0.70 16 25 C -0.13 -2.29 9.99 22.33 0.22 -2.07 16 26 C 0.06 1.66 7.29 22.37 0.16 1.83 16 27 F -0.15 -4.48 17.26 44.97 0.78 -3.70 16 28 C -0.14 -4.35 10.07 22.45 0.23 -4.12 16 29 C -0.07 -1.85 6.35 -20.08 -0.13 -1.98 16 30 H 0.09 0.73 7.31 -2.39 -0.02 0.72 16 31 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 32 H 0.09 1.07 5.84 -2.38 -0.01 1.06 16 33 H 0.09 2.88 8.12 -2.39 -0.02 2.86 16 34 H 0.05 2.42 7.20 -2.39 -0.02 2.40 16 35 H 0.06 3.04 6.81 -2.39 -0.02 3.03 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.03 1.64 7.41 -2.39 -0.02 1.62 16 38 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.22 1.04 6.08 -2.91 -0.02 1.02 16 41 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.12 -0.60 8.13 -2.39 -0.02 -0.62 16 43 H 0.10 -0.32 8.02 -2.39 -0.02 -0.34 16 44 H 0.18 0.59 8.00 -2.91 -0.02 0.57 16 45 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.10 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -91.87 383.03 5.13 -86.74 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.00 Total: 6.70 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 7.68 Total: 12.68 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -6.29 Total: -125.16 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.07 Total: -27.25 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -91.87 5.13 -86.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.155 kcal (2) G-P(sol) polarization free energy of solvation -91.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds