Wall clock time and date at job start Wed Apr 1 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35957 * 126.36650 * 2 1 4 4 N 1.30204 * 110.07234 * 180.26379 * 3 2 1 5 5 C 1.35732 * 109.67500 * 0.02562 * 4 3 2 6 6 N 1.33112 * 133.19943 * 179.97438 * 5 4 3 7 7 C 1.31839 * 121.83211 * 180.02562 * 6 5 4 8 8 O 1.35727 * 119.27553 * 179.97438 * 7 6 5 9 9 C 1.39121 * 121.44804 * 359.95177 * 7 6 5 10 10 C 1.39567 * 119.23361 * 0.02661 * 9 7 6 11 11 C 1.47912 * 121.00569 * 179.97438 * 10 9 7 12 12 O 1.21547 * 119.99787 * 142.13215 * 11 10 9 13 13 N 1.34774 * 120.00165 * 322.13118 * 11 10 9 14 14 C 1.46505 * 119.99960 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47065 * 180.02562 * 14 13 11 16 16 H 1.09007 * 112.84853 * 316.19853 * 15 14 13 17 17 C 1.53780 * 113.61501 * 87.50298 * 15 14 13 18 18 C 1.53778 * 87.08054 * 139.98316 * 17 15 14 19 19 H 1.08996 * 113.61941 * 89.11758 * 18 17 15 20 20 N 1.46503 * 113.61340 * 220.02177 * 18 17 15 21 21 C 1.36940 * 119.99979 * 252.49852 * 20 18 17 22 22 H 1.08002 * 119.99839 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00154 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00261 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00175 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 89.99724 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.46804 * 329.99876 * 25 23 21 29 29 C 1.53775 * 113.61492 * 185.00135 * 15 14 13 30 30 C 1.37612 * 126.36275 * 180.31194 * 2 1 3 31 31 H 1.08998 * 109.46875 * 263.65315 * 1 2 3 32 32 H 1.09001 * 109.46814 * 23.65633 * 1 2 3 33 33 H 1.09005 * 109.47258 * 143.65444 * 1 2 3 34 34 H 1.08007 * 124.96758 * 0.24207 * 3 2 1 35 35 H 0.96698 * 114.00159 * 269.98125 * 8 7 6 36 36 H 1.08000 * 120.38191 * 180.02562 * 9 7 6 37 37 H 0.96997 * 119.99666 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47059 * 299.99835 * 14 13 11 39 39 H 1.09000 * 109.46896 * 60.00278 * 14 13 11 40 40 H 1.09002 * 113.61422 * 254.52867 * 17 15 14 41 41 H 1.08997 * 113.61549 * 25.42814 * 17 15 14 42 42 H 0.96993 * 120.00697 * 72.49187 * 20 18 17 43 43 H 0.97003 * 120.00105 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.61492 * 334.56677 * 29 15 14 45 45 H 1.09006 * 113.61698 * 105.46919 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0948 0.0000 4 7 3.5209 0.7295 -0.0056 5 6 3.6009 -0.6255 -0.0102 6 7 4.6233 -1.4779 -0.0170 7 6 4.4401 -2.7835 -0.0208 8 8 5.5203 -3.6052 -0.0283 9 6 3.1640 -3.3373 -0.0170 10 6 2.0538 -2.4915 -0.0094 11 6 0.6794 -3.0382 -0.0057 12 8 -0.1897 -2.4929 0.6460 13 7 0.3908 -4.1408 -0.7249 14 6 -0.9707 -4.6819 -0.7216 15 6 -1.0272 -5.9258 -1.6106 16 1 -0.4973 -5.7960 -2.5543 17 6 -0.6671 -7.2266 -0.8736 18 6 -1.8030 -7.8966 -1.6646 19 1 -1.4848 -8.3070 -2.6229 20 7 -2.5908 -8.8439 -0.8719 21 6 -2.4610 -10.1901 -1.0864 22 1 -1.7783 -10.5535 -1.8403 23 6 -3.2070 -11.0877 -0.3351 24 7 -4.0386 -10.6450 0.5840 25 14 -3.0305 -12.9242 -0.6282 26 1 -1.9594 -13.4645 0.2469 27 1 -4.3145 -13.6011 -0.3145 28 1 -2.6775 -13.1668 -2.0500 29 6 -2.4433 -6.5027 -1.7735 30 6 2.2809 -1.1081 -0.0060 31 1 -0.3633 -0.1136 1.0214 32 1 -0.3633 0.9413 -0.4124 33 1 -0.3634 -0.8278 -0.6091 34 1 1.9255 2.1180 0.0037 35 1 5.8295 -3.8405 -0.9138 36 1 3.0338 -4.4095 -0.0198 37 1 1.0845 -4.5761 -1.2446 38 1 -1.2525 -4.9504 0.2966 39 1 -1.6613 -3.9301 -1.1036 40 1 0.3227 -7.6095 -1.1220 41 1 -0.8486 -7.1846 0.2003 42 1 -3.2041 -8.5176 -0.1951 43 1 -4.5596 -11.2723 1.1093 44 1 -3.1105 -6.2627 -0.9456 45 1 -2.8875 -6.3011 -2.7484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086105823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:20 Heat of formation + Delta-G solvation = 56.869082 kcal Electronic energy + Delta-G solvation = -29121.695233 eV Core-core repulsion = 24949.085617 eV Total energy + Delta-G solvation = -4172.609616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.90808 -40.21231 -39.55297 -38.59883 -36.66296 -35.02836 -34.65525 -33.45110 -32.49990 -30.34416 -29.65180 -27.88034 -27.30621 -25.22721 -25.07254 -23.88999 -23.40617 -22.28047 -21.23321 -20.51821 -19.45660 -18.98375 -18.41643 -17.79966 -17.32435 -17.07234 -16.69936 -16.16167 -15.82445 -15.60426 -15.23839 -14.88101 -14.82951 -14.60867 -14.24147 -13.87202 -13.74275 -13.63532 -13.57309 -13.04109 -12.78075 -12.22257 -12.16705 -12.00121 -11.91538 -11.52581 -11.35499 -11.26589 -11.12971 -10.89365 -10.76061 -10.54723 -10.26592 -10.15885 -9.92944 -9.65541 -9.54134 -9.32888 -9.17760 -8.93325 -8.87874 -7.03125 -5.84029 -3.13331 -0.02436 0.65159 1.88130 2.04302 2.48270 2.68766 2.88043 3.31439 3.38866 3.44101 3.45850 3.76937 3.88941 4.22071 4.26456 4.44056 4.52730 4.61465 4.76005 4.81095 4.84299 4.89411 5.08361 5.10952 5.25140 5.32833 5.36169 5.39604 5.62939 5.64482 5.68974 5.81040 5.81696 5.99867 6.01831 6.17720 6.23533 6.29094 6.47020 6.48921 6.70960 6.95395 7.00912 7.08690 7.21847 7.55598 7.63485 7.73039 8.34356 9.45591 10.02988 10.36887 11.38199 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002006 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.615605 B =13956.693289 C =15060.671445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.477 5.477 3 C 0.290 3.710 4 N -0.486 5.486 5 C 0.271 3.729 6 N -0.452 5.452 7 C 0.330 3.670 8 O -0.473 6.473 9 C -0.139 4.139 10 C -0.053 4.053 11 C 0.555 3.445 12 O -0.529 6.529 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.129 4.129 16 H 0.089 0.911 17 C -0.162 4.162 18 C 0.166 3.834 19 H 0.076 0.924 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.142 4.142 30 C 0.027 3.973 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.404 0.596 36 H 0.159 0.841 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.882 23.120 -5.617 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.164 5.164 3 C 0.002 3.998 4 N -0.206 5.206 5 C 0.028 3.972 6 N -0.173 5.173 7 C 0.138 3.862 8 O -0.279 6.279 9 C -0.163 4.163 10 C -0.067 4.067 11 C 0.341 3.659 12 O -0.407 6.407 13 N -0.359 5.359 14 C 0.008 3.992 15 C -0.148 4.148 16 H 0.107 0.893 17 C -0.203 4.203 18 C 0.054 3.946 19 H 0.094 0.906 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.182 4.182 30 C -0.088 4.088 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.243 0.757 35 H 0.261 0.739 36 H 0.176 0.824 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.573 24.161 -4.604 27.624 hybrid contribution -1.140 -1.967 -0.471 2.322 sum 11.433 22.194 -5.075 25.477 Atomic orbital electron populations 1.22305 0.74111 1.04151 1.05340 1.45219 1.08362 1.04872 1.57995 1.25715 0.84209 0.93953 0.95944 1.70394 1.18247 1.08856 1.23115 1.18914 0.85201 0.90622 1.02489 1.65858 1.35138 1.03065 1.13222 1.18508 0.85781 0.85010 0.96883 1.84867 1.45906 1.63013 1.34153 1.22155 0.90748 1.01455 1.01905 1.19142 0.94390 0.89792 1.03353 1.18033 0.86892 0.80927 0.80096 1.90803 1.48046 1.59629 1.42224 1.46025 1.13582 1.27762 1.48566 1.21567 0.81346 0.95154 1.01108 1.22662 1.00163 0.93244 0.98737 0.89265 1.23976 1.00937 0.94785 1.00608 1.21504 0.90948 0.87742 0.94403 0.90621 1.42408 1.48091 1.02264 1.42251 1.19290 1.19560 0.82741 1.16104 0.91081 1.24778 0.99179 0.98157 0.98763 1.69657 1.29323 1.33530 1.25433 0.86188 0.76961 0.85391 0.77621 1.21652 1.21739 1.20718 1.23456 0.94590 0.98490 1.01634 1.19428 0.93381 0.88822 1.07174 0.89301 0.89495 0.89152 0.75651 0.73851 0.82366 0.76149 0.90671 0.91419 0.92644 0.90267 0.78063 0.93403 0.90063 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 9.38 59.85 0.56 1.10 16 2 N -0.48 -4.16 3.19 -122.88 -0.39 -4.55 16 3 C 0.29 2.18 12.49 -89.78 -1.12 1.06 16 4 N -0.49 -5.70 11.27 -13.60 -0.15 -5.85 16 5 C 0.27 3.48 8.37 -156.96 -1.31 2.17 16 6 N -0.45 -5.91 10.41 -12.77 -0.13 -6.04 16 7 C 0.33 3.41 7.71 -17.22 -0.13 3.28 16 8 O -0.47 -3.94 13.55 -18.89 -0.26 -4.19 16 9 C -0.14 -1.24 9.37 -38.76 -0.36 -1.60 16 10 C -0.05 -0.55 5.80 -104.71 -0.61 -1.16 16 11 C 0.56 6.04 6.81 -12.30 -0.08 5.96 16 12 O -0.53 -6.99 13.26 5.32 0.07 -6.92 16 13 N -0.71 -6.54 5.50 -61.23 -0.34 -6.87 16 14 C 0.13 1.41 5.51 -4.04 -0.02 1.39 16 15 C -0.13 -1.47 3.75 -89.81 -0.34 -1.81 16 16 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 17 C -0.16 -2.41 7.43 -25.92 -0.19 -2.60 16 18 C 0.17 2.99 4.48 -67.12 -0.30 2.69 16 19 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 20 N -0.71 -17.05 5.40 -52.64 -0.28 -17.33 16 21 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C -0.14 -2.03 7.39 -25.92 -0.19 -2.22 16 30 C 0.03 0.31 6.76 -83.67 -0.57 -0.26 16 31 H 0.09 0.67 7.74 -51.93 -0.40 0.27 16 32 H 0.09 0.25 8.13 -51.93 -0.42 -0.17 16 33 H 0.09 0.74 6.10 -51.93 -0.32 0.42 16 34 H 0.23 0.46 8.06 -52.48 -0.42 0.04 16 35 H 0.40 1.17 9.06 45.56 0.41 1.58 16 36 H 0.16 1.01 7.83 -52.49 -0.41 0.60 16 37 H 0.40 2.81 7.87 -40.82 -0.32 2.49 16 38 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 42 H 0.39 9.86 7.92 -40.82 -0.32 9.54 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -36.71 380.59 -10.07 -46.77 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.10 Total: 8.48 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -4.92 Total: 0.80 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.57 Total: -67.52 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.19 Total: -11.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.71 -10.07 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086105823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.642 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds