Wall clock time and date at job start Wed Apr 1 2020 03:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35957 * 126.36650 * 2 1 4 4 N 1.30204 * 110.07234 * 180.26379 * 3 2 1 5 5 C 1.35732 * 109.67500 * 0.02562 * 4 3 2 6 6 N 1.33112 * 133.19943 * 179.97438 * 5 4 3 7 7 C 1.31839 * 121.83211 * 180.02562 * 6 5 4 8 8 O 1.35727 * 119.27553 * 179.97438 * 7 6 5 9 9 C 1.39121 * 121.44804 * 359.95177 * 7 6 5 10 10 C 1.39567 * 119.23361 * 0.02661 * 9 7 6 11 11 C 1.47912 * 121.00569 * 179.97438 * 10 9 7 12 12 O 1.21547 * 119.99787 * 142.13215 * 11 10 9 13 13 N 1.34774 * 120.00165 * 322.13118 * 11 10 9 14 14 C 1.46505 * 119.99960 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47065 * 180.02562 * 14 13 11 16 16 H 1.09007 * 112.84853 * 316.19853 * 15 14 13 17 17 C 1.53780 * 113.61501 * 87.50298 * 15 14 13 18 18 C 1.53778 * 87.08054 * 139.98316 * 17 15 14 19 19 H 1.08996 * 113.61941 * 89.11758 * 18 17 15 20 20 N 1.46503 * 113.61340 * 220.02177 * 18 17 15 21 21 C 1.36940 * 119.99979 * 252.49852 * 20 18 17 22 22 H 1.08002 * 119.99839 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00154 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00261 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00175 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 89.99724 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.46804 * 329.99876 * 25 23 21 29 29 C 1.53775 * 113.61492 * 185.00135 * 15 14 13 30 30 C 1.37612 * 126.36275 * 180.31194 * 2 1 3 31 31 H 1.08998 * 109.46875 * 263.65315 * 1 2 3 32 32 H 1.09001 * 109.46814 * 23.65633 * 1 2 3 33 33 H 1.09005 * 109.47258 * 143.65444 * 1 2 3 34 34 H 1.08007 * 124.96758 * 0.24207 * 3 2 1 35 35 H 0.96698 * 114.00159 * 269.98125 * 8 7 6 36 36 H 1.08000 * 120.38191 * 180.02562 * 9 7 6 37 37 H 0.96997 * 119.99666 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47059 * 299.99835 * 14 13 11 39 39 H 1.09000 * 109.46896 * 60.00278 * 14 13 11 40 40 H 1.09002 * 113.61422 * 254.52867 * 17 15 14 41 41 H 1.08997 * 113.61549 * 25.42814 * 17 15 14 42 42 H 0.96993 * 120.00697 * 72.49187 * 20 18 17 43 43 H 0.97003 * 120.00105 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.61492 * 334.56677 * 29 15 14 45 45 H 1.09006 * 113.61698 * 105.46919 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0948 0.0000 4 7 3.5209 0.7295 -0.0056 5 6 3.6009 -0.6255 -0.0102 6 7 4.6233 -1.4779 -0.0170 7 6 4.4401 -2.7835 -0.0208 8 8 5.5203 -3.6052 -0.0283 9 6 3.1640 -3.3373 -0.0170 10 6 2.0538 -2.4915 -0.0094 11 6 0.6794 -3.0382 -0.0057 12 8 -0.1897 -2.4929 0.6460 13 7 0.3908 -4.1408 -0.7249 14 6 -0.9707 -4.6819 -0.7216 15 6 -1.0272 -5.9258 -1.6106 16 1 -0.4973 -5.7960 -2.5543 17 6 -0.6671 -7.2266 -0.8736 18 6 -1.8030 -7.8966 -1.6646 19 1 -1.4848 -8.3070 -2.6229 20 7 -2.5908 -8.8439 -0.8719 21 6 -2.4610 -10.1901 -1.0864 22 1 -1.7783 -10.5535 -1.8403 23 6 -3.2070 -11.0877 -0.3351 24 7 -4.0386 -10.6450 0.5840 25 14 -3.0305 -12.9242 -0.6282 26 1 -1.9594 -13.4645 0.2469 27 1 -4.3145 -13.6011 -0.3145 28 1 -2.6775 -13.1668 -2.0500 29 6 -2.4433 -6.5027 -1.7735 30 6 2.2809 -1.1081 -0.0060 31 1 -0.3633 -0.1136 1.0214 32 1 -0.3633 0.9413 -0.4124 33 1 -0.3634 -0.8278 -0.6091 34 1 1.9255 2.1180 0.0037 35 1 5.8295 -3.8405 -0.9138 36 1 3.0338 -4.4095 -0.0198 37 1 1.0845 -4.5761 -1.2446 38 1 -1.2525 -4.9504 0.2966 39 1 -1.6613 -3.9301 -1.1036 40 1 0.3227 -7.6095 -1.1220 41 1 -0.8486 -7.1846 0.2003 42 1 -3.2041 -8.5176 -0.1951 43 1 -4.5596 -11.2723 1.1093 44 1 -3.1105 -6.2627 -0.9456 45 1 -2.8875 -6.3011 -2.7484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086105823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:18 Heat of formation + Delta-G solvation = 27.569913 kcal Electronic energy + Delta-G solvation = -29122.965741 eV Core-core repulsion = 24949.085617 eV Total energy + Delta-G solvation = -4173.880124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60161 -41.07007 -40.30710 -39.77411 -37.33951 -36.15684 -35.36346 -35.09333 -33.31757 -32.12014 -30.34889 -28.95053 -27.95877 -26.43180 -26.18631 -25.42199 -24.13496 -23.12525 -22.36105 -21.36455 -20.53380 -19.90701 -19.12257 -19.02079 -18.49310 -18.03763 -17.46069 -17.09859 -16.68819 -16.55369 -16.23583 -16.09042 -15.80343 -15.46178 -15.31724 -15.09418 -14.85029 -14.49872 -14.44008 -14.36070 -13.51936 -13.25247 -13.20406 -13.04122 -12.91748 -12.88574 -12.80682 -12.60758 -12.22315 -12.07709 -12.01142 -11.84562 -11.69160 -11.54806 -11.35843 -11.04348 -10.80142 -10.36580 -10.19429 -9.91754 -9.59008 -8.95950 -7.93931 -5.21689 -0.75184 -0.07877 1.18842 1.44657 1.48127 1.49257 1.57535 1.72029 1.87472 2.22591 2.54748 2.57342 3.07402 3.25857 3.38165 3.49337 3.66645 3.74377 3.75387 3.92278 3.93565 4.07482 4.12707 4.28007 4.36524 4.39977 4.43064 4.45159 4.57402 4.64088 4.72253 4.80482 4.98929 5.00168 5.01709 5.07016 5.17401 5.21814 5.30421 5.42537 5.53778 5.75040 5.91935 6.28757 6.31372 6.33798 6.67432 6.85139 6.94970 7.34452 8.13756 8.34284 9.29485 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002006 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.615605 B =13956.693289 C =15060.671445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.478 5.478 3 C 0.309 3.691 4 N -0.530 5.530 5 C 0.245 3.755 6 N -0.489 5.489 7 C 0.329 3.671 8 O -0.480 6.480 9 C -0.128 4.128 10 C -0.059 4.059 11 C 0.559 3.441 12 O -0.555 6.555 13 N -0.696 5.696 14 C 0.139 3.861 15 C -0.095 4.095 16 H 0.123 0.877 17 C -0.155 4.155 18 C 0.140 3.860 19 H 0.080 0.920 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.136 4.136 30 C 0.011 3.989 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.279 0.721 35 H 0.425 0.575 36 H 0.185 0.815 37 H 0.417 0.583 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 24.114 -7.346 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.166 5.166 3 C 0.022 3.978 4 N -0.251 5.251 5 C 0.003 3.997 6 N -0.212 5.212 7 C 0.138 3.862 8 O -0.290 6.290 9 C -0.151 4.151 10 C -0.073 4.073 11 C 0.345 3.655 12 O -0.435 6.435 13 N -0.347 5.347 14 C 0.015 3.985 15 C -0.114 4.114 16 H 0.141 0.859 17 C -0.195 4.195 18 C 0.031 3.969 19 H 0.098 0.902 20 N -0.368 5.368 21 C -0.372 4.372 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.175 4.175 30 C -0.105 4.105 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.294 0.706 35 H 0.287 0.713 36 H 0.203 0.797 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.379 25.165 -6.411 29.213 hybrid contribution -1.308 -2.195 0.017 2.555 sum 12.071 22.970 -6.394 26.725 Atomic orbital electron populations 1.22388 0.72808 1.05806 1.04595 1.45459 1.09061 1.04474 1.57556 1.26731 0.82950 0.95402 0.92702 1.70363 1.20606 1.08696 1.25468 1.19195 0.85873 0.91266 1.03413 1.65830 1.36216 1.04311 1.14805 1.18690 0.86702 0.84570 0.96226 1.84820 1.45483 1.62442 1.36260 1.22349 0.89736 1.02479 1.00552 1.19166 0.94371 0.89835 1.03944 1.18066 0.86777 0.80921 0.79758 1.90797 1.48796 1.60480 1.43387 1.45833 1.13366 1.27227 1.48263 1.21357 0.82289 0.95028 0.99790 1.22475 0.97790 0.91667 0.99491 0.85916 1.23744 1.00224 0.96398 0.99162 1.21985 0.92274 0.88325 0.94326 0.90228 1.42637 1.48904 1.02318 1.42904 1.19721 1.18182 0.84297 1.14955 0.90298 1.25573 0.99906 1.02328 0.99422 1.69815 1.30978 1.34431 1.27047 0.85171 0.76274 0.80489 0.78042 1.21633 1.22558 1.19175 1.23323 0.96090 0.96002 1.02097 1.19584 0.93470 0.89756 1.07677 0.90504 0.85274 0.90726 0.70601 0.71276 0.79742 0.74508 0.92783 0.90582 0.91235 0.92508 0.79647 0.94174 0.91345 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 9.38 127.77 1.20 2.15 16 2 N -0.48 -7.63 3.19 -542.69 -1.73 -9.36 16 3 C 0.31 4.06 12.49 180.05 2.25 6.31 16 4 N -0.53 -12.20 11.27 -196.94 -2.22 -14.42 16 5 C 0.25 6.32 8.37 134.28 1.12 7.44 16 6 N -0.49 -12.92 10.41 -307.37 -3.20 -16.12 16 7 C 0.33 6.58 7.71 84.90 0.65 7.23 16 8 O -0.48 -7.43 13.55 -90.50 -1.23 -8.65 16 9 C -0.13 -2.09 9.37 22.80 0.21 -1.87 16 10 C -0.06 -1.16 5.80 -19.92 -0.12 -1.28 16 11 C 0.56 11.33 6.81 86.81 0.59 11.92 16 12 O -0.56 -14.19 13.26 -3.86 -0.05 -14.24 16 13 N -0.70 -11.08 5.50 -465.91 -2.56 -13.64 16 14 C 0.14 2.68 5.51 86.38 0.48 3.15 16 15 C -0.10 -1.88 3.75 -10.27 -0.04 -1.92 16 16 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 17 C -0.15 -4.32 7.43 31.12 0.23 -4.09 16 18 C 0.14 4.87 4.48 45.52 0.20 5.07 16 19 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 20 N -0.73 -35.18 5.40 -320.45 -1.73 -36.91 16 21 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -59.01 13.06 21.65 0.28 -58.72 16 25 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C -0.14 -3.63 7.39 31.12 0.23 -3.40 16 30 C 0.01 0.24 6.76 39.27 0.27 0.51 16 31 H 0.08 1.07 7.74 -2.39 -0.02 1.05 16 32 H 0.13 0.30 8.13 -2.39 -0.02 0.28 16 33 H 0.07 1.11 6.10 -2.38 -0.01 1.09 16 34 H 0.28 0.09 8.06 -2.91 -0.02 0.06 16 35 H 0.43 1.83 9.06 -74.06 -0.67 1.16 16 36 H 0.19 1.85 7.83 -2.91 -0.02 1.83 16 37 H 0.42 4.36 7.87 -92.71 -0.73 3.63 16 38 H 0.05 1.32 7.84 -2.39 -0.02 1.30 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.87 7.89 -2.39 -0.02 1.85 16 42 H 0.37 19.56 7.92 -92.71 -0.73 18.83 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.07 2.03 8.08 -2.39 -0.02 2.02 16 45 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -83.29 380.59 -2.88 -86.18 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -1.06 Total: 23.42 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 8.59 Total: 15.12 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -11.16 Total: -149.17 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.28 Total: -22.89 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -83.29 -2.88 -86.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086105823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.746 kcal (2) G-P(sol) polarization free energy of solvation -83.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds