Wall clock time and date at job start Wed Apr 1 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34460 * 125.76714 * 2 1 4 4 C 1.38075 * 107.39044 * 180.02562 * 3 2 1 5 5 C 1.47349 * 126.41017 * 179.97438 * 4 3 2 6 6 O 1.34263 * 127.19385 * 312.31358 * 5 4 3 7 7 N 1.20733 * 111.95054 * 180.02562 * 6 5 4 8 8 C 1.29880 * 112.81590 * 359.69340 * 7 6 5 9 9 C 1.39932 * 127.19982 * 132.31474 * 5 4 3 10 10 C 1.46917 * 128.39477 * 359.97438 * 9 5 4 11 11 O 1.21670 * 119.99399 * 354.88073 * 10 9 5 12 12 N 1.34769 * 120.00025 * 174.88147 * 10 9 5 13 13 C 1.46505 * 119.99855 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46600 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.85248 * 43.80853 * 14 13 12 16 16 C 1.53784 * 113.60909 * 174.99988 * 14 13 12 17 17 C 1.53782 * 87.07907 * 139.98238 * 16 14 13 18 18 H 1.08995 * 113.61568 * 89.20459 * 17 16 14 19 19 N 1.46504 * 113.61321 * 220.01646 * 17 16 14 20 20 C 1.36933 * 120.00016 * 205.00072 * 19 17 16 21 21 H 1.07992 * 120.00130 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99804 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00274 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99773 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47091 * 269.99884 * 24 22 20 26 26 H 1.48503 * 109.47376 * 29.99977 * 24 22 20 27 27 H 1.48501 * 109.46870 * 149.99809 * 24 22 20 28 28 C 1.53777 * 87.08039 * 334.56404 * 17 16 14 29 29 C 1.41299 * 107.17923 * 0.23684 * 4 3 2 30 30 N 1.30489 * 108.05536 * 359.59358 * 29 4 3 31 31 H 1.08995 * 109.46889 * 90.00416 * 1 2 3 32 32 H 1.09002 * 109.46763 * 210.00311 * 1 2 3 33 33 H 1.09002 * 109.47056 * 330.00150 * 1 2 3 34 34 H 1.08005 * 126.30327 * 359.97438 * 3 2 1 35 35 H 1.07998 * 126.79088 * 180.30267 * 8 7 6 36 36 H 0.96999 * 120.00383 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.46962 * 60.00271 * 13 12 10 38 38 H 1.09000 * 109.47038 * 299.99626 * 13 12 10 39 39 H 1.09000 * 113.61650 * 25.43031 * 16 14 13 40 40 H 1.08997 * 113.69009 * 254.54242 * 16 14 13 41 41 H 0.97004 * 119.99739 * 25.00437 * 19 17 16 42 42 H 0.97002 * 119.99729 * 0.02562 * 23 22 20 43 43 H 1.09008 * 113.60626 * 139.97968 * 28 17 16 44 44 H 1.08995 * 113.61658 * 270.87978 * 28 17 16 45 45 H 1.08002 * 125.97404 * 179.74110 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0910 0.0000 4 6 3.5613 0.6557 -0.0006 5 6 4.7651 1.5053 -0.0013 6 8 5.0127 2.5615 -0.7925 7 7 6.0879 3.0583 -0.5588 8 6 6.7254 2.4527 0.3971 9 6 5.8894 1.3803 0.8223 10 6 6.1435 0.3873 1.8749 11 8 5.2765 -0.4093 2.1817 12 7 7.3368 0.3590 2.5007 13 6 7.5903 -0.6316 3.5499 14 6 9.0095 -0.4487 4.0916 15 1 9.2671 0.5971 4.2593 16 6 9.3358 -1.3625 5.2847 17 6 10.7274 -1.5516 4.6581 18 1 11.4564 -0.8086 4.9813 19 7 11.2327 -2.9234 4.7542 20 6 12.5813 -3.1596 4.7306 21 1 13.2725 -2.3346 4.6417 22 6 13.0599 -4.4595 4.8211 23 7 12.2176 -5.4649 4.9300 24 14 14.8997 -4.7817 4.7882 25 1 15.3424 -4.9806 3.3848 26 1 15.6162 -3.6200 5.3733 27 1 15.2029 -6.0005 5.5805 28 6 10.0749 -1.2289 3.3036 29 6 3.5317 -0.7570 -0.0065 30 7 2.2829 -1.1354 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.9184 2.1186 -0.0004 35 1 7.6980 2.7096 0.7901 36 1 8.0280 0.9938 2.2559 37 1 7.4863 -1.6344 3.1357 38 1 6.8721 -0.4961 4.3586 39 1 8.7410 -2.2755 5.3110 40 1 9.3552 -0.8422 6.2423 41 1 10.6118 -3.6644 4.8344 42 1 11.2623 -5.2976 4.9467 43 1 10.6909 -0.5995 2.6612 44 1 9.6822 -2.1054 2.7883 45 1 4.3923 -1.4095 -0.0124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086158762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:15 Heat of formation + Delta-G solvation = 115.537423 kcal Electronic energy + Delta-G solvation = -28684.422888 eV Core-core repulsion = 24514.357322 eV Total energy + Delta-G solvation = -4170.065566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.93641 -42.18307 -40.82605 -39.77984 -36.29481 -35.34939 -35.00520 -34.56775 -33.29826 -31.98140 -30.62468 -28.91022 -27.67054 -26.52211 -25.99510 -25.25613 -23.96510 -22.72807 -22.22931 -21.85426 -21.41571 -20.49770 -19.48037 -19.16674 -18.67460 -18.24974 -17.32843 -16.84276 -16.73229 -16.44870 -16.37763 -16.15450 -15.72615 -15.57524 -15.40178 -15.18952 -14.64322 -14.42481 -14.35246 -14.07844 -13.66082 -13.42635 -13.31071 -13.30512 -13.12103 -12.75791 -12.60317 -12.54950 -12.06278 -11.94953 -11.82273 -11.65050 -11.57397 -11.39644 -11.18900 -10.96062 -10.90086 -10.81202 -10.55269 -10.09954 -9.35442 -9.07646 -8.38560 -5.31888 -0.24237 0.77622 0.83169 1.34820 1.54458 1.58541 1.69430 1.83274 1.86186 2.21347 2.26915 2.72728 3.22217 3.33679 3.39384 3.57581 3.64816 3.68817 3.80106 3.81735 3.85907 4.09563 4.12534 4.20267 4.27586 4.35503 4.43478 4.45213 4.52093 4.64510 4.65019 4.72781 4.75757 4.83237 4.91274 4.91738 5.00858 5.16653 5.29895 5.35120 5.39319 5.61116 5.67399 5.90640 6.49639 6.50319 6.52375 7.08635 7.10857 7.18257 8.01480 8.14184 9.13266 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.001879 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.868235 B =14900.699354 C =15751.119325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.121 3.879 4 C -0.226 4.226 5 C 0.142 3.858 6 O 0.100 5.900 7 N -0.383 5.383 8 C 0.046 3.954 9 C -0.271 4.271 10 C 0.593 3.407 11 O -0.564 6.564 12 N -0.705 5.705 13 C 0.142 3.858 14 C -0.092 4.092 15 H 0.125 0.875 16 C -0.137 4.137 17 C 0.145 3.855 18 H 0.078 0.922 19 N -0.743 5.743 20 C -0.331 4.331 21 H 0.070 0.930 22 C -0.111 4.111 23 N -0.978 5.978 24 Si 1.130 2.870 25 H -0.286 1.286 26 H -0.270 1.270 27 H -0.295 1.295 28 C -0.153 4.153 29 C 0.109 3.891 30 N -0.333 5.333 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.229 0.771 35 H 0.232 0.768 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.358 0.642 42 H 0.243 0.757 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 22.502 -10.873 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.139 5.139 3 C -0.031 4.031 4 C -0.239 4.239 5 C 0.074 3.926 6 O 0.042 5.958 7 N -0.090 5.090 8 C -0.134 4.134 9 C -0.278 4.278 10 C 0.380 3.620 11 O -0.444 6.444 12 N -0.356 5.356 13 C 0.019 3.981 14 C -0.111 4.111 15 H 0.143 0.857 16 C -0.177 4.177 17 C 0.036 3.964 18 H 0.097 0.903 19 N -0.382 5.382 20 C -0.462 4.462 21 H 0.088 0.912 22 C -0.301 4.301 23 N -0.627 5.627 24 Si 0.955 3.045 25 H -0.213 1.213 26 H -0.195 1.195 27 H -0.222 1.222 28 C -0.193 4.193 29 C -0.078 4.078 30 N -0.154 5.154 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.245 0.755 35 H 0.249 0.751 36 H 0.252 0.748 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.190 0.810 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.493 20.972 -11.365 33.480 hybrid contribution -0.318 0.660 0.458 0.864 sum -23.812 21.631 -10.907 33.969 Atomic orbital electron populations 1.22412 0.70721 1.06572 1.05508 1.48738 1.08640 1.03058 1.53461 1.23589 0.88775 0.95299 0.95462 1.17833 0.89526 0.91443 1.25091 1.22145 0.93860 0.87685 0.88868 1.84893 1.28505 1.34777 1.47594 1.73537 0.94909 1.21556 1.19042 1.25478 1.02539 0.91857 0.93526 1.21291 0.98131 1.03485 1.04940 1.16902 0.82297 0.82409 0.80361 1.90840 1.45648 1.41791 1.66157 1.45638 1.14924 1.36524 1.38545 1.21226 0.96139 0.91263 0.89494 1.22460 0.92201 1.00380 0.96102 0.85733 1.23336 0.96901 0.99269 0.98167 1.21926 0.93342 0.85823 0.95292 0.90349 1.42659 1.03743 1.03527 1.88269 1.20503 0.85073 0.94981 1.45670 0.91192 1.27233 1.10527 0.91568 1.00791 1.70965 1.02528 1.32886 1.56303 0.82587 0.69607 0.75593 0.76690 1.21318 1.19527 1.22173 1.23713 0.98056 0.99068 0.98503 1.23826 0.94964 0.93579 0.95400 1.77220 1.01998 1.09450 1.26710 0.88418 0.89148 0.85750 0.75479 0.75149 0.74805 0.93279 0.91303 0.91509 0.90241 0.80988 0.94657 0.91301 0.92704 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.45 127.77 1.46 1.87 16 2 N -0.36 -5.42 3.99 -367.58 -1.47 -6.89 16 3 C 0.12 1.59 11.51 84.25 0.97 2.56 16 4 C -0.23 -4.52 5.56 -20.17 -0.11 -4.63 16 5 C 0.14 2.82 7.39 25.08 0.19 3.01 16 6 O 0.10 1.89 11.17 69.74 0.78 2.67 16 7 N -0.38 -7.26 11.97 -56.82 -0.68 -7.94 16 8 C 0.05 0.70 11.68 86.04 1.01 1.71 16 9 C -0.27 -5.42 6.36 -19.54 -0.12 -5.54 16 10 C 0.59 14.17 7.80 86.52 0.67 14.85 16 11 O -0.56 -17.64 14.56 -4.25 -0.06 -17.71 16 12 N -0.70 -13.73 5.55 -466.85 -2.59 -16.32 16 13 C 0.14 3.33 5.51 86.38 0.48 3.80 16 14 C -0.09 -2.12 3.75 -10.27 -0.04 -2.15 16 15 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.14 -4.06 7.39 31.12 0.23 -3.83 16 17 C 0.15 5.45 4.48 45.52 0.20 5.65 16 18 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 19 N -0.74 -37.36 5.40 -320.46 -1.73 -39.09 16 20 C -0.33 -18.58 9.97 84.03 0.84 -17.75 16 21 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 22 C -0.11 -6.48 5.50 84.86 0.47 -6.02 16 23 N -0.98 -62.33 13.70 21.65 0.30 -62.03 16 24 Si 1.13 52.34 29.92 68.60 2.05 54.39 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 C -0.15 -4.72 7.43 31.12 0.23 -4.49 16 29 C 0.11 2.64 10.39 85.65 0.89 3.53 16 30 N -0.33 -7.91 12.50 -56.25 -0.70 -8.62 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.23 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.23 1.65 7.77 -2.91 -0.02 1.63 16 36 H 0.41 5.41 7.72 -92.71 -0.72 4.69 16 37 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.36 19.12 6.76 -92.71 -0.63 18.49 16 42 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 43 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.05 1.96 7.89 -2.39 -0.02 1.94 16 45 H 0.18 4.44 7.82 -2.91 -0.02 4.42 16 Total: -1.00 -82.81 387.88 3.10 -79.71 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.15 Total: 29.24 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 7.36 Total: -7.42 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -6.87 Total: -140.89 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.72 Total: -15.04 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -82.81 3.10 -79.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086158762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.247 kcal (2) G-P(sol) polarization free energy of solvation -82.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds