Wall clock time and date at job start Wed Apr 1 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40222 * 126.65807 * 2 1 4 4 N 1.28649 * 109.51195 * 179.97438 * 3 2 1 5 5 C 1.35426 * 110.12223 * 359.97438 * 4 3 2 6 6 C 1.39804 * 133.03591 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.55601 * 180.02562 * 6 5 4 8 8 C 1.47718 * 119.86235 * 179.97438 * 7 6 5 9 9 O 1.21567 * 120.00049 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99844 * 180.27601 * 10 8 7 12 12 H 1.09000 * 109.46100 * 34.72994 * 11 10 8 13 13 C 1.53037 * 109.46380 * 274.75639 * 11 10 8 14 14 C 1.53191 * 109.31567 * 178.60249 * 13 11 10 15 15 N 1.46925 * 108.76492 * 54.65379 * 14 13 11 16 16 C 1.36935 * 120.63231 * 126.40931 * 15 14 13 17 17 H 1.08004 * 120.00161 * 331.82430 * 16 15 14 18 18 C 1.38817 * 120.00560 * 151.82430 * 16 15 14 19 19 N 1.31618 * 119.99417 * 343.07764 * 18 16 15 20 20 Si 1.86795 * 120.00275 * 163.07190 * 18 16 15 21 21 H 1.48497 * 109.47347 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.47038 * 210.00392 * 20 18 16 23 23 H 1.48502 * 109.47024 * 330.00114 * 20 18 16 24 24 C 1.46933 * 118.74236 * 306.38361 * 15 14 13 25 25 C 1.53045 * 109.46156 * 154.70214 * 11 10 8 26 26 H 1.09003 * 109.49797 * 61.42920 * 25 11 10 27 27 O 1.42907 * 109.49437 * 301.34087 * 25 11 10 28 28 C 1.40256 * 120.27527 * 0.25506 * 7 6 5 29 29 C 1.36268 * 120.45274 * 359.45669 * 28 7 6 30 30 C 1.37265 * 126.65656 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47213 * 270.02767 * 1 2 3 32 32 H 1.08999 * 109.46764 * 30.03504 * 1 2 3 33 33 H 1.09006 * 109.47069 * 150.02925 * 1 2 3 34 34 H 1.07998 * 120.22397 * 0.03771 * 6 5 4 35 35 H 0.97003 * 120.00027 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.49450 * 298.56565 * 13 11 10 37 37 H 1.09004 * 109.49965 * 58.66324 * 13 11 10 38 38 H 1.09000 * 109.60122 * 294.86706 * 14 13 11 39 39 H 1.08997 * 109.70355 * 174.50394 * 14 13 11 40 40 H 0.97005 * 119.99341 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58669 * 293.82426 * 24 15 14 42 42 H 1.08996 * 109.70354 * 173.46402 * 24 15 14 43 43 H 0.96697 * 114.00152 * 179.97438 * 27 25 11 44 44 H 1.08001 * 119.77214 * 179.74119 * 28 7 6 45 45 H 1.08000 * 119.92867 * 180.26087 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5315 0.7456 0.0005 5 6 3.6018 -0.6068 0.0015 6 6 4.6718 -1.5066 0.0019 7 6 4.4187 -2.8721 0.0024 8 6 5.5442 -3.8288 0.0023 9 8 6.6892 -3.4204 0.0022 10 7 5.3017 -5.1546 0.0033 11 6 6.4179 -6.1034 0.0092 12 1 7.2392 -5.6941 0.5975 13 6 6.8898 -6.3446 -1.4264 14 6 8.0792 -7.3099 -1.4134 15 7 7.6898 -8.5301 -0.6934 16 6 7.8392 -9.7609 -1.2746 17 1 7.7983 -9.8591 -2.3494 18 6 8.0432 -10.8825 -0.4826 19 7 8.4230 -10.7433 0.7699 20 14 7.7785 -12.5892 -1.1942 21 1 9.0488 -13.0817 -1.7848 22 1 7.3430 -13.5129 -0.1160 23 1 6.7332 -12.5298 -2.2473 24 6 7.1376 -8.4046 0.6624 25 6 5.9590 -7.4267 0.6260 26 1 5.1543 -7.8490 0.0240 27 8 5.4897 -7.1957 1.9559 28 6 3.0988 -3.3466 -0.0029 29 6 2.0515 -2.4748 0.0025 30 6 2.2845 -1.1012 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3633 -0.8903 -0.5134 34 1 5.6885 -1.1422 0.0020 35 1 4.3880 -5.4805 0.0037 36 1 6.0763 -6.7772 -2.0089 37 1 7.1945 -5.3982 -1.8732 38 1 8.9244 -6.8419 -0.9088 39 1 8.3586 -7.5627 -2.4362 40 1 8.5659 -11.5271 1.3233 41 1 7.9060 -8.0258 1.3363 42 1 6.7938 -9.3785 1.0108 43 1 5.1818 -7.9929 2.4084 44 1 2.9113 -4.4102 -0.0067 45 1 1.0385 -2.8494 0.0027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090358362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:18 Heat of formation + Delta-G solvation = 57.606543 kcal Electronic energy + Delta-G solvation = -29692.911393 eV Core-core repulsion = 25520.333756 eV Total energy + Delta-G solvation = -4172.577638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43973 -40.04381 -38.23517 -37.17317 -35.29791 -35.12231 -34.44036 -32.32092 -31.11483 -30.85096 -29.35552 -28.85094 -27.95693 -25.57244 -24.29225 -23.65237 -22.44515 -21.81822 -21.54180 -20.58794 -19.61881 -18.35991 -17.79427 -17.13560 -16.72518 -16.52326 -16.45686 -16.08420 -15.27372 -14.85496 -14.74151 -14.60899 -14.28166 -13.96300 -13.83052 -13.64022 -13.62324 -13.35281 -13.22565 -12.72768 -12.66483 -12.35168 -12.21905 -12.09592 -11.96578 -11.69680 -11.24425 -11.14653 -11.07616 -10.85900 -10.79965 -10.43651 -10.25049 -10.06246 -9.97919 -9.58645 -9.39510 -9.30777 -8.86336 -8.67230 -8.54926 -6.79865 -5.89552 -3.33225 0.08866 0.55200 1.64730 1.80535 2.70408 3.15442 3.30925 3.38445 3.39943 3.57309 3.69769 3.93514 4.19040 4.38611 4.44101 4.51332 4.54539 4.60083 4.74415 4.77577 4.87197 5.06176 5.27494 5.37064 5.43058 5.45648 5.55781 5.57082 5.76620 5.84076 5.88429 5.97762 6.04558 6.07534 6.18088 6.20917 6.41635 6.44813 6.68995 6.79189 6.89434 7.09158 7.42859 7.59366 7.64980 7.70560 8.05844 8.32081 8.34481 9.08982 9.71739 10.28102 11.18963 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026929 B = 0.002118 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.528351 B =13218.799517 C =13565.147210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.400 5.400 3 N -0.010 5.010 4 N -0.207 5.207 5 C -0.028 4.028 6 C 0.034 3.966 7 C -0.144 4.144 8 C 0.560 3.440 9 O -0.536 6.536 10 N -0.708 5.708 11 C 0.162 3.838 12 H 0.090 0.910 13 C -0.139 4.139 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.148 3.852 25 C 0.072 3.928 26 H 0.052 0.948 27 O -0.573 6.573 28 C -0.036 4.036 29 C -0.128 4.128 30 C 0.103 3.897 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.030 0.970 42 H 0.094 0.906 43 H 0.376 0.624 44 H 0.143 0.857 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.874 15.641 -0.695 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.194 5.194 3 N 0.010 4.990 4 N -0.086 5.086 5 C -0.151 4.151 6 C 0.011 3.989 7 C -0.151 4.151 8 C 0.346 3.654 9 O -0.414 6.414 10 N -0.358 5.358 11 C 0.059 3.941 12 H 0.108 0.892 13 C -0.180 4.180 14 C 0.017 3.983 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.021 3.979 25 C 0.011 3.989 26 H 0.070 0.930 27 O -0.377 6.377 28 C -0.058 4.058 29 C -0.151 4.151 30 C -0.019 4.019 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.172 0.828 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.160 0.840 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.892 17.956 -0.724 25.358 hybrid contribution -1.075 -2.693 -0.110 2.902 sum -18.966 15.263 -0.834 24.359 Atomic orbital electron populations 1.22029 0.72677 1.05312 1.04225 1.50116 1.07910 1.03508 1.57831 1.81643 0.94055 1.07557 1.15722 1.74878 1.11160 1.10447 1.12107 1.19797 0.93077 0.90170 1.12080 1.20601 0.98564 0.89944 0.89789 1.19809 0.93768 0.93437 1.08078 1.17942 0.88168 0.82432 0.76856 1.90798 1.22066 1.78517 1.50007 1.46000 1.10513 1.05266 1.74000 1.21042 0.88872 0.87196 0.97027 0.89156 1.22420 1.00534 1.00169 0.94844 1.20947 0.93042 0.87338 0.96924 1.44009 1.71471 1.01561 1.14262 1.19185 1.44090 0.83556 0.91667 0.91400 1.25094 0.99364 0.98565 0.96616 1.70027 1.48293 1.28842 1.07417 0.86289 0.78168 0.84163 0.78099 1.21265 1.21531 1.20446 1.21407 0.91514 0.97781 0.87166 1.22988 0.98342 0.95204 0.82376 0.93007 1.86418 1.85307 1.37414 1.28609 1.20968 0.90877 1.00160 0.93838 1.19679 1.00523 0.87956 1.06895 1.19488 0.90928 0.90600 1.00841 0.89848 0.88394 0.88878 0.82773 0.76970 0.91964 0.91663 0.95771 0.92060 0.93472 0.95187 0.88840 0.77720 0.83980 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.52 59.85 0.69 1.04 16 2 N -0.40 -3.55 4.11 -65.43 -0.27 -3.82 16 3 N -0.01 -0.11 13.72 60.35 0.83 0.71 16 4 N -0.21 -2.74 12.40 32.15 0.40 -2.34 16 5 C -0.03 -0.34 7.26 -84.76 -0.62 -0.95 16 6 C 0.03 0.42 9.64 -38.76 -0.37 0.04 16 7 C -0.14 -1.68 5.87 -105.03 -0.62 -2.30 16 8 C 0.56 8.25 7.73 -12.39 -0.10 8.16 16 9 O -0.54 -9.91 15.97 5.31 0.08 -9.82 16 10 N -0.71 -9.84 4.87 -54.75 -0.27 -10.11 16 11 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 12 H 0.09 1.81 7.57 -51.93 -0.39 1.42 16 13 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 14 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 15 N -0.59 -14.01 2.99 -172.32 -0.52 -14.53 16 16 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -25.06 11.19 55.49 0.62 -24.44 16 20 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.15 3.31 4.93 -3.71 -0.02 3.29 16 25 C 0.07 1.26 3.14 -26.61 -0.08 1.18 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -9.16 13.16 -35.23 -0.46 -9.62 16 28 C -0.04 -0.30 9.46 -39.53 -0.37 -0.68 16 29 C -0.13 -0.95 9.97 -39.89 -0.40 -1.35 16 30 C 0.10 1.02 6.93 -84.10 -0.58 0.43 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.15 1.92 7.62 -52.49 -0.40 1.52 16 35 H 0.40 4.35 6.60 -40.82 -0.27 4.08 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 43 H 0.38 4.75 9.08 45.56 0.41 5.17 16 44 H 0.14 0.85 6.36 -52.49 -0.33 0.52 16 45 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -34.00 375.19 -7.04 -41.03 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.06 Total: 6.56 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -3.02 Total: 5.05 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.80 Total: -54.52 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.38 Total: -19.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.00 -7.04 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.639 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds