Wall clock time and date at job start Wed Apr 1 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40222 * 126.65807 * 2 1 4 4 N 1.28649 * 109.51195 * 179.97438 * 3 2 1 5 5 C 1.35426 * 110.12223 * 359.97438 * 4 3 2 6 6 C 1.39804 * 133.03591 * 179.97438 * 5 4 3 7 7 C 1.38881 * 119.55601 * 180.02562 * 6 5 4 8 8 C 1.47718 * 119.86235 * 179.97438 * 7 6 5 9 9 O 1.21567 * 120.00049 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99844 * 180.27601 * 10 8 7 12 12 H 1.09000 * 109.46100 * 34.72994 * 11 10 8 13 13 C 1.53037 * 109.46380 * 274.75639 * 11 10 8 14 14 C 1.53191 * 109.31567 * 178.60249 * 13 11 10 15 15 N 1.46925 * 108.76492 * 54.65379 * 14 13 11 16 16 C 1.36935 * 120.63231 * 126.40931 * 15 14 13 17 17 H 1.08004 * 120.00161 * 331.82430 * 16 15 14 18 18 C 1.38817 * 120.00560 * 151.82430 * 16 15 14 19 19 N 1.31618 * 119.99417 * 343.07764 * 18 16 15 20 20 Si 1.86795 * 120.00275 * 163.07190 * 18 16 15 21 21 H 1.48497 * 109.47347 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.47038 * 210.00392 * 20 18 16 23 23 H 1.48502 * 109.47024 * 330.00114 * 20 18 16 24 24 C 1.46933 * 118.74236 * 306.38361 * 15 14 13 25 25 C 1.53045 * 109.46156 * 154.70214 * 11 10 8 26 26 H 1.09003 * 109.49797 * 61.42920 * 25 11 10 27 27 O 1.42907 * 109.49437 * 301.34087 * 25 11 10 28 28 C 1.40256 * 120.27527 * 0.25506 * 7 6 5 29 29 C 1.36268 * 120.45274 * 359.45669 * 28 7 6 30 30 C 1.37265 * 126.65656 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47213 * 270.02767 * 1 2 3 32 32 H 1.08999 * 109.46764 * 30.03504 * 1 2 3 33 33 H 1.09006 * 109.47069 * 150.02925 * 1 2 3 34 34 H 1.07998 * 120.22397 * 0.03771 * 6 5 4 35 35 H 0.97003 * 120.00027 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.49450 * 298.56565 * 13 11 10 37 37 H 1.09004 * 109.49965 * 58.66324 * 13 11 10 38 38 H 1.09000 * 109.60122 * 294.86706 * 14 13 11 39 39 H 1.08997 * 109.70355 * 174.50394 * 14 13 11 40 40 H 0.97005 * 119.99341 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58669 * 293.82426 * 24 15 14 42 42 H 1.08996 * 109.70354 * 173.46402 * 24 15 14 43 43 H 0.96697 * 114.00152 * 179.97438 * 27 25 11 44 44 H 1.08001 * 119.77214 * 179.74119 * 28 7 6 45 45 H 1.08000 * 119.92867 * 180.26087 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5315 0.7456 0.0005 5 6 3.6018 -0.6068 0.0015 6 6 4.6718 -1.5066 0.0019 7 6 4.4187 -2.8721 0.0024 8 6 5.5442 -3.8288 0.0023 9 8 6.6892 -3.4204 0.0022 10 7 5.3017 -5.1546 0.0033 11 6 6.4179 -6.1034 0.0092 12 1 7.2392 -5.6941 0.5975 13 6 6.8898 -6.3446 -1.4264 14 6 8.0792 -7.3099 -1.4134 15 7 7.6898 -8.5301 -0.6934 16 6 7.8392 -9.7609 -1.2746 17 1 7.7983 -9.8591 -2.3494 18 6 8.0432 -10.8825 -0.4826 19 7 8.4230 -10.7433 0.7699 20 14 7.7785 -12.5892 -1.1942 21 1 9.0488 -13.0817 -1.7848 22 1 7.3430 -13.5129 -0.1160 23 1 6.7332 -12.5298 -2.2473 24 6 7.1376 -8.4046 0.6624 25 6 5.9590 -7.4267 0.6260 26 1 5.1543 -7.8490 0.0240 27 8 5.4897 -7.1957 1.9559 28 6 3.0988 -3.3466 -0.0029 29 6 2.0515 -2.4748 0.0025 30 6 2.2845 -1.1012 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3633 -0.8903 -0.5134 34 1 5.6885 -1.1422 0.0020 35 1 4.3880 -5.4805 0.0037 36 1 6.0763 -6.7772 -2.0089 37 1 7.1945 -5.3982 -1.8732 38 1 8.9244 -6.8419 -0.9088 39 1 8.3586 -7.5627 -2.4362 40 1 8.5659 -11.5271 1.3233 41 1 7.9060 -8.0258 1.3363 42 1 6.7938 -9.3785 1.0108 43 1 5.1818 -7.9929 2.4084 44 1 2.9113 -4.4102 -0.0067 45 1 1.0385 -2.8494 0.0027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090358362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:17 Heat of formation + Delta-G solvation = 30.608478 kcal Electronic energy + Delta-G solvation = -29694.082117 eV Core-core repulsion = 25520.333756 eV Total energy + Delta-G solvation = -4173.748362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.20637 -41.25083 -39.58861 -38.14979 -36.85013 -35.90189 -35.72779 -34.00690 -32.03547 -31.77927 -30.84815 -30.38305 -28.47173 -27.18508 -25.47359 -24.46400 -23.95857 -23.35114 -22.24679 -21.72616 -21.14988 -19.47380 -18.74605 -18.43741 -18.06761 -17.75325 -17.21132 -17.15868 -16.75683 -16.14332 -15.96826 -15.63435 -15.50568 -15.25898 -15.00429 -14.96568 -14.46064 -14.37566 -14.12642 -13.83774 -13.82026 -13.53911 -13.49429 -13.32835 -13.05653 -13.01431 -12.76354 -12.63297 -12.50101 -12.06634 -12.00222 -11.90118 -11.85280 -11.72589 -11.40781 -11.06001 -10.87235 -10.58231 -10.18160 -9.98961 -9.43343 -8.73261 -7.88613 -5.35810 -0.68737 -0.26175 1.04355 1.07893 1.50207 1.52162 1.61636 1.72077 2.01920 2.51864 2.65230 2.93659 3.15252 3.28847 3.35375 3.48572 3.64522 3.66915 3.84017 3.95133 3.98494 4.10320 4.25466 4.35087 4.38804 4.45760 4.46562 4.50065 4.67170 4.72181 4.77582 4.83926 4.90910 4.97523 5.07174 5.08444 5.10435 5.19698 5.33988 5.36427 5.47037 5.59389 5.60972 5.66656 6.35892 6.55152 6.80016 6.87634 7.12785 7.21012 7.80146 8.33234 9.18113 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026929 B = 0.002118 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.528351 B =13218.799517 C =13565.147210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.029 5.029 4 N -0.245 5.245 5 C -0.050 4.050 6 C 0.015 3.985 7 C -0.145 4.145 8 C 0.559 3.441 9 O -0.582 6.582 10 N -0.693 5.693 11 C 0.170 3.830 12 H 0.055 0.945 13 C -0.123 4.123 14 C 0.140 3.860 15 N -0.604 5.604 16 C -0.264 4.264 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.266 1.266 24 C 0.156 3.844 25 C 0.094 3.906 26 H 0.073 0.927 27 O -0.573 6.573 28 C -0.034 4.034 29 C -0.103 4.103 30 C 0.101 3.899 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.006 0.994 39 H 0.067 0.933 40 H 0.251 0.749 41 H -0.008 1.008 42 H 0.072 0.928 43 H 0.393 0.607 44 H 0.175 0.825 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.242 14.887 -1.636 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.009 5.009 4 N -0.124 5.124 5 C -0.174 4.174 6 C -0.008 4.008 7 C -0.152 4.152 8 C 0.347 3.653 9 O -0.463 6.463 10 N -0.344 5.344 11 C 0.064 3.936 12 H 0.074 0.926 13 C -0.163 4.163 14 C 0.014 3.986 15 N -0.329 5.329 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.190 1.190 24 C 0.029 3.971 25 C 0.033 3.967 26 H 0.091 0.909 27 O -0.380 6.380 28 C -0.056 4.056 29 C -0.125 4.125 30 C -0.023 4.023 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.253 0.747 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.010 0.990 42 H 0.090 0.910 43 H 0.242 0.758 44 H 0.192 0.808 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.332 17.231 -1.671 28.257 hybrid contribution 0.244 -2.392 0.215 2.414 sum -22.088 14.840 -1.456 26.650 Atomic orbital electron populations 1.22588 0.69446 1.07474 1.06077 1.50523 1.09460 1.02403 1.55586 1.81536 0.94153 1.09012 1.16238 1.74848 1.12143 1.11461 1.13901 1.19951 0.94406 0.90026 1.13020 1.20473 0.98072 0.90685 0.91595 1.19575 0.94264 0.92125 1.09198 1.18406 0.88396 0.82806 0.75643 1.90781 1.24287 1.79232 1.52009 1.45686 1.10559 1.04521 1.73600 1.20689 0.89039 0.87486 0.96340 0.92644 1.22206 0.99494 0.99406 0.95206 1.21047 0.94062 0.86924 0.96537 1.44263 1.72018 1.01941 1.14667 1.19535 1.43171 0.84568 0.92067 0.90958 1.25847 0.99616 1.01993 0.96988 1.70191 1.49824 1.29405 1.08700 0.85256 0.77941 0.79670 0.77416 1.21664 1.21824 1.19039 1.21234 0.92221 0.97750 0.85923 1.22540 0.96624 0.93979 0.83582 0.90907 1.86399 1.85004 1.38594 1.27966 1.21247 0.89165 1.01967 0.93240 1.20152 1.02450 0.86198 1.03700 1.19818 0.89975 0.91862 1.00605 0.88046 0.87370 0.85713 0.84757 0.74713 0.90168 0.91146 0.97581 0.91499 0.93956 0.98958 0.91018 0.75794 0.80754 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.52 127.77 1.47 1.72 16 2 N -0.38 -5.83 4.11 -360.91 -1.48 -7.31 16 3 N -0.03 -0.68 13.72 37.02 0.51 -0.17 16 4 N -0.25 -6.69 12.40 -52.21 -0.65 -7.34 16 5 C -0.05 -1.21 7.26 39.57 0.29 -0.92 16 6 C 0.02 0.38 9.64 22.80 0.22 0.60 16 7 C -0.15 -3.19 5.87 -20.13 -0.12 -3.31 16 8 C 0.56 16.18 7.73 86.75 0.67 16.85 16 9 O -0.58 -22.31 15.97 -3.93 -0.06 -22.37 16 10 N -0.69 -17.88 4.87 -445.40 -2.17 -20.05 16 11 C 0.17 5.70 2.12 45.02 0.10 5.80 16 12 H 0.06 2.29 7.57 -2.39 -0.02 2.27 16 13 C -0.12 -4.12 5.65 30.67 0.17 -3.95 16 14 C 0.14 5.80 6.52 86.36 0.56 6.36 16 15 N -0.60 -29.02 2.99 -699.09 -2.09 -31.11 16 16 C -0.26 -13.73 9.58 84.04 0.81 -12.92 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 18 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 19 N -0.94 -53.16 11.19 21.65 0.24 -52.92 16 20 Si 0.97 42.47 29.59 68.60 2.03 44.50 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C 0.16 7.08 4.93 86.36 0.43 7.50 16 25 C 0.09 3.18 3.14 30.67 0.10 3.28 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 O -0.57 -17.32 13.16 -148.98 -1.96 -19.28 16 28 C -0.03 -0.44 9.46 22.30 0.21 -0.22 16 29 C -0.10 -1.02 9.97 22.07 0.22 -0.80 16 30 C 0.10 1.70 6.93 39.16 0.27 1.97 16 31 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.12 -0.36 8.14 -2.38 -0.02 -0.38 16 34 H 0.13 3.75 7.62 -2.91 -0.02 3.72 16 35 H 0.41 7.48 6.60 -92.71 -0.61 6.87 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 40 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 43 H 0.39 9.15 9.08 -74.06 -0.67 8.48 16 44 H 0.18 1.06 6.36 -2.91 -0.02 1.04 16 45 H 0.19 0.10 8.06 -2.91 -0.02 0.07 16 Total: -1.00 -78.83 375.19 -0.05 -78.88 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.23 Total: 17.40 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.81 Total: 19.78 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -5.64 Total: -118.89 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.02 Total: -41.66 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -78.83 -0.05 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.486 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds