Wall clock time and date at job start Wed Apr 1 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40224 * 126.65621 * 2 1 4 4 N 1.28645 * 109.50371 * 180.02562 * 3 2 1 5 5 C 1.35427 * 110.13386 * 359.97438 * 4 3 2 6 6 C 1.39788 * 133.04441 * 179.97438 * 5 4 3 7 7 C 1.38888 * 119.56327 * 180.02562 * 6 5 4 8 8 C 1.47715 * 119.86508 * 179.97438 * 7 6 5 9 9 O 1.21567 * 120.00239 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99614 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99412 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46523 * 324.97571 * 11 10 8 13 13 C 1.53042 * 109.45670 * 84.93997 * 11 10 8 14 14 C 1.53197 * 109.30919 * 181.38319 * 13 11 10 15 15 N 1.46927 * 108.77489 * 305.35760 * 14 13 11 16 16 C 1.36933 * 120.63236 * 233.63190 * 15 14 13 17 17 H 1.08001 * 120.00100 * 27.66091 * 16 15 14 18 18 C 1.38813 * 119.99949 * 207.66126 * 16 15 14 19 19 N 1.31622 * 120.00112 * 17.37304 * 18 16 15 20 20 Si 1.86798 * 120.00055 * 197.37310 * 18 16 15 21 21 H 1.48506 * 109.47123 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47161 * 119.99931 * 20 18 16 23 23 H 1.48496 * 109.47171 * 240.00424 * 20 18 16 24 24 C 1.46930 * 118.73361 * 53.61178 * 15 14 13 25 25 C 1.53048 * 109.45832 * 205.00096 * 11 10 8 26 26 H 1.08998 * 109.49592 * 298.60444 * 25 11 10 27 27 O 1.42898 * 109.49442 * 58.66288 * 25 11 10 28 28 C 1.40253 * 120.26824 * 359.97438 * 7 6 5 29 29 C 1.36271 * 120.45576 * 0.27294 * 28 7 6 30 30 C 1.37268 * 126.65128 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47241 * 270.00237 * 1 2 3 32 32 H 1.09007 * 109.46840 * 29.99899 * 1 2 3 33 33 H 1.08998 * 109.47513 * 150.00490 * 1 2 3 34 34 H 1.08000 * 120.22156 * 0.06327 * 6 5 4 35 35 H 0.96997 * 120.00297 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.49468 * 301.32941 * 13 11 10 37 37 H 1.08993 * 109.50221 * 61.42793 * 13 11 10 38 38 H 1.09007 * 109.58392 * 185.57604 * 14 13 11 39 39 H 1.08992 * 109.58774 * 65.14772 * 14 13 11 40 40 H 0.96995 * 119.99929 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58327 * 186.60230 * 24 15 14 42 42 H 1.09004 * 109.70331 * 66.25060 * 24 15 14 43 43 H 0.96697 * 113.99868 * 179.97438 * 27 25 11 44 44 H 1.08001 * 119.77379 * 179.97438 * 28 7 6 45 45 H 1.07999 * 119.92742 * 179.72426 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5314 0.7455 -0.0005 5 6 3.6019 -0.6069 -0.0004 6 6 4.6717 -1.5066 -0.0012 7 6 4.4186 -2.8723 -0.0012 8 6 5.5441 -3.8289 -0.0027 9 8 6.6891 -3.4205 -0.0043 10 7 5.3015 -5.1547 -0.0022 11 6 6.4178 -6.1035 -0.0031 12 1 7.2390 -5.6976 -0.5937 13 6 6.8900 -6.3364 1.4339 14 6 8.0793 -7.3020 1.4261 15 7 7.6897 -8.5262 0.7131 16 6 7.8383 -9.7537 1.3016 17 1 7.8052 -9.8444 2.3773 18 6 8.0315 -10.8814 0.5157 19 7 8.4110 -10.7527 -0.7381 20 14 7.7531 -12.5817 1.2374 21 1 7.3332 -12.4546 2.6561 22 1 6.6911 -13.2782 0.4679 23 1 9.0131 -13.3640 1.1618 24 6 7.1373 -8.4083 -0.6433 25 6 5.9587 -7.4303 -0.6123 26 1 5.1538 -7.8488 -0.0082 27 8 5.4892 -7.2068 -1.9433 28 6 3.0987 -3.3466 0.0001 29 6 2.0514 -2.4748 -0.0042 30 6 2.2845 -1.1013 0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5139 33 1 -0.3634 -0.8900 -0.5137 34 1 5.6884 -1.1423 -0.0012 35 1 4.3880 -5.4806 -0.0013 36 1 7.1949 -5.3873 1.8749 37 1 6.0768 -6.7655 2.0191 38 1 8.3564 -7.5487 2.4511 39 1 8.9243 -6.8369 0.9187 40 1 8.5463 -11.5408 -1.2871 41 1 6.7929 -9.3848 -0.9837 42 1 7.9046 -8.0346 -1.3214 43 1 5.1820 -8.0067 -2.3915 44 1 2.9111 -4.4102 -0.0004 45 1 1.0385 -2.8494 -0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090358363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:20 Heat of formation + Delta-G solvation = 30.645896 kcal Electronic energy + Delta-G solvation = -29695.857684 eV Core-core repulsion = 25522.110945 eV Total energy + Delta-G solvation = -4173.746739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.20623 -41.25140 -39.59048 -38.15059 -36.85330 -35.90315 -35.72801 -34.00804 -32.03586 -31.78004 -30.84818 -30.38513 -28.47146 -27.18852 -25.47549 -24.46522 -23.96056 -23.35268 -22.24633 -21.72550 -21.14975 -19.47466 -18.74795 -18.43761 -18.06833 -17.75566 -17.21220 -17.15759 -16.76070 -16.14691 -15.96482 -15.63096 -15.50995 -15.25969 -15.00562 -14.96692 -14.47921 -14.35978 -14.12762 -13.83655 -13.82455 -13.54004 -13.49435 -13.32530 -13.06104 -13.02148 -12.76285 -12.66886 -12.48576 -12.06772 -11.96363 -11.90076 -11.85128 -11.72544 -11.40949 -11.06044 -10.87394 -10.59082 -10.18143 -9.98954 -9.43315 -8.74367 -7.88751 -5.35514 -0.68766 -0.26229 1.04358 1.07871 1.49115 1.52330 1.62438 1.72104 2.01897 2.51633 2.65205 2.93594 3.15098 3.28545 3.35354 3.48532 3.64371 3.66788 3.84005 3.95078 3.98503 4.10332 4.25431 4.35088 4.38830 4.45661 4.46536 4.49924 4.67161 4.72170 4.77580 4.83921 4.90926 4.97401 5.07115 5.08265 5.10406 5.19561 5.33966 5.36474 5.47004 5.59356 5.60949 5.66847 6.35568 6.55163 6.80014 6.87495 7.12549 7.21000 7.80002 8.32791 9.18091 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.002120 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.806959 B =13206.308195 C =13553.653335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.029 5.029 4 N -0.245 5.245 5 C -0.050 4.050 6 C 0.015 3.985 7 C -0.145 4.145 8 C 0.559 3.441 9 O -0.582 6.582 10 N -0.693 5.693 11 C 0.170 3.830 12 H 0.055 0.945 13 C -0.123 4.123 14 C 0.140 3.860 15 N -0.604 5.604 16 C -0.262 4.262 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.298 1.298 24 C 0.155 3.845 25 C 0.094 3.906 26 H 0.073 0.927 27 O -0.573 6.573 28 C -0.034 4.034 29 C -0.103 4.103 30 C 0.101 3.899 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.007 0.993 40 H 0.251 0.749 41 H 0.072 0.928 42 H -0.007 1.007 43 H 0.393 0.607 44 H 0.175 0.825 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 14.959 1.452 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.009 5.009 4 N -0.124 5.124 5 C -0.174 4.174 6 C -0.008 4.008 7 C -0.152 4.152 8 C 0.348 3.652 9 O -0.463 6.463 10 N -0.344 5.344 11 C 0.064 3.936 12 H 0.074 0.926 13 C -0.163 4.163 14 C 0.014 3.986 15 N -0.329 5.329 16 C -0.392 4.392 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.225 1.225 24 C 0.028 3.972 25 C 0.033 3.967 26 H 0.091 0.909 27 O -0.380 6.380 28 C -0.056 4.056 29 C -0.125 4.125 30 C -0.023 4.023 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.011 0.989 43 H 0.242 0.758 44 H 0.192 0.808 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.302 17.307 1.490 28.269 hybrid contribution 0.224 -2.399 -0.187 2.417 sum -22.078 14.908 1.303 26.672 Atomic orbital electron populations 1.22587 0.69450 1.07448 1.06101 1.50525 1.09461 1.02403 1.55593 1.81536 0.94149 1.09007 1.16234 1.74844 1.12150 1.11463 1.13900 1.19949 0.94405 0.90024 1.13020 1.20471 0.98075 0.90684 0.91591 1.19575 0.94263 0.92127 1.09203 1.18405 0.88396 0.82803 0.75644 1.90781 1.24282 1.79230 1.52007 1.45687 1.10560 1.04522 1.73607 1.20691 0.89039 0.87464 0.96360 0.92635 1.22212 0.99507 0.99424 0.95199 1.21051 0.94080 0.86846 0.96602 1.44277 1.72008 1.01977 1.14635 1.19579 1.43104 0.84512 0.91956 0.90908 1.25831 0.99744 1.01912 0.97010 1.70196 1.49974 1.29117 1.08865 0.85186 0.76832 0.79860 0.78405 1.18888 1.21275 1.22531 1.21242 0.92240 0.97832 0.85886 1.22533 0.96613 0.93991 0.83573 0.90918 1.86397 1.85015 1.38556 1.27988 1.21246 0.89169 1.01963 0.93238 1.20149 1.02448 0.86202 1.03705 1.19818 0.89979 0.91858 1.00601 0.87982 0.87392 0.85757 0.84753 0.74716 0.91146 0.90172 0.91490 0.97525 0.93963 0.90982 0.98924 0.75798 0.80762 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.52 127.77 1.47 1.72 16 2 N -0.38 -5.83 4.11 -360.91 -1.48 -7.31 16 3 N -0.03 -0.67 13.72 37.02 0.51 -0.17 16 4 N -0.25 -6.69 12.40 -52.21 -0.65 -7.33 16 5 C -0.05 -1.20 7.26 39.57 0.29 -0.92 16 6 C 0.02 0.38 9.64 22.80 0.22 0.60 16 7 C -0.15 -3.19 5.87 -20.13 -0.12 -3.31 16 8 C 0.56 16.17 7.73 86.75 0.67 16.84 16 9 O -0.58 -22.28 15.98 -3.93 -0.06 -22.35 16 10 N -0.69 -17.87 4.87 -445.39 -2.17 -20.04 16 11 C 0.17 5.69 2.12 45.02 0.10 5.79 16 12 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 13 C -0.12 -4.13 5.65 30.67 0.17 -3.96 16 14 C 0.14 5.79 6.52 86.36 0.56 6.35 16 15 N -0.60 -28.99 2.99 -699.10 -2.09 -31.08 16 16 C -0.26 -13.62 9.58 84.03 0.81 -12.81 16 17 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 18 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 19 N -0.94 -53.15 11.19 21.65 0.24 -52.90 16 20 Si 0.97 42.49 29.59 68.60 2.03 44.52 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 24 C 0.15 7.04 4.94 86.36 0.43 7.47 16 25 C 0.09 3.18 3.14 30.67 0.10 3.28 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 O -0.57 -17.31 13.16 -148.98 -1.96 -19.27 16 28 C -0.03 -0.43 9.46 22.30 0.21 -0.22 16 29 C -0.10 -1.02 9.97 22.07 0.22 -0.80 16 30 C 0.10 1.70 6.93 39.16 0.27 1.97 16 31 H 0.10 0.00 8.14 -2.39 -0.02 -0.01 16 32 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.13 3.74 7.62 -2.91 -0.02 3.72 16 35 H 0.41 7.48 6.60 -92.71 -0.61 6.87 16 36 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.64 7.93 -2.38 -0.02 2.62 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.07 3.59 6.03 -2.39 -0.01 3.57 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 43 H 0.39 9.16 9.08 -74.06 -0.67 8.49 16 44 H 0.18 1.06 6.36 -2.91 -0.02 1.04 16 45 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -78.77 375.16 -0.05 -78.82 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.23 Total: 17.32 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.81 Total: 19.78 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.64 Total: -118.83 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -2.02 Total: -41.62 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.77 -0.05 -78.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.469 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds