Wall clock time and date at job start Wed Apr 1 2020 03:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40227 * 126.65750 * 2 1 4 4 N 1.28647 * 109.50784 * 180.28307 * 3 2 1 5 5 C 1.35427 * 110.13157 * 359.78030 * 4 3 2 6 6 C 1.39794 * 133.04187 * 179.97438 * 5 4 3 7 7 C 1.38887 * 119.55473 * 180.02562 * 6 5 4 8 8 C 1.47720 * 119.85902 * 179.97438 * 7 6 5 9 9 O 1.21563 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99695 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99617 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46125 * 35.00270 * 11 10 8 13 13 C 1.53044 * 109.46117 * 275.02775 * 11 10 8 14 14 C 1.53155 * 109.32906 * 301.36503 * 13 11 10 15 15 N 1.46932 * 108.76760 * 305.34910 * 14 13 11 16 16 C 1.36927 * 120.63466 * 233.58886 * 15 14 13 17 17 H 1.08000 * 119.99819 * 27.69978 * 16 15 14 18 18 C 1.38817 * 120.00296 * 207.69892 * 16 15 14 19 19 N 1.31618 * 119.99960 * 17.35912 * 18 16 15 20 20 Si 1.86797 * 120.00120 * 197.35945 * 18 16 15 21 21 H 1.48490 * 109.47287 * 89.99745 * 20 18 16 22 22 H 1.48499 * 109.46925 * 209.99946 * 20 18 16 23 23 H 1.48503 * 109.46989 * 329.99618 * 20 18 16 24 24 C 1.46927 * 118.73488 * 53.61585 * 15 14 13 25 25 C 1.53042 * 109.45722 * 154.97837 * 11 10 8 26 26 H 1.08995 * 109.49575 * 178.60821 * 25 11 10 27 27 O 1.42903 * 109.49662 * 298.70381 * 25 11 10 28 28 C 1.40255 * 120.27557 * 359.97266 * 7 6 5 29 29 C 1.36261 * 120.45086 * 0.02562 * 28 7 6 30 30 C 1.37272 * 126.66082 * 179.91086 * 2 1 3 31 31 H 1.08999 * 109.47225 * 270.08405 * 1 2 3 32 32 H 1.09003 * 109.47629 * 30.09187 * 1 2 3 33 33 H 1.09007 * 109.47114 * 150.09092 * 1 2 3 34 34 H 1.07992 * 120.22230 * 0.04410 * 6 5 4 35 35 H 0.97000 * 119.99686 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49006 * 61.29960 * 13 11 10 37 37 H 1.08997 * 109.49551 * 181.39296 * 13 11 10 38 38 H 1.09000 * 109.59081 * 185.57050 * 14 13 11 39 39 H 1.09001 * 109.59628 * 65.13839 * 14 13 11 40 40 H 0.96991 * 120.00416 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58644 * 186.60321 * 24 15 14 42 42 H 1.09007 * 109.70794 * 66.24445 * 24 15 14 43 43 H 0.96699 * 114.00325 * 180.02562 * 27 25 11 44 44 H 1.07996 * 119.77418 * 179.97438 * 28 7 6 45 45 H 1.08005 * 119.92218 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1249 0.0000 4 7 3.5314 0.7456 -0.0060 5 6 3.6018 -0.6068 -0.0054 6 6 4.6718 -1.5065 -0.0106 7 6 4.4186 -2.8721 -0.0088 8 6 5.5441 -3.8288 -0.0149 9 8 6.6890 -3.4203 -0.0211 10 7 5.3016 -5.1546 -0.0136 11 6 6.4178 -6.1034 -0.0202 12 1 7.2431 -5.6972 0.5645 13 6 6.8798 -6.3371 -1.4604 14 6 5.7085 -6.8751 -2.2876 15 7 5.1718 -8.0716 -1.6248 16 6 5.0380 -9.2487 -2.3113 17 1 5.6910 -9.4656 -3.1437 18 6 4.0629 -10.1633 -1.9375 19 7 3.0616 -9.7821 -1.1730 20 14 4.1719 -11.9350 -2.5193 21 1 4.9455 -12.7327 -1.5344 22 1 2.8042 -12.4988 -2.6479 23 1 4.8527 -11.9818 -3.8382 24 6 4.7810 -7.9807 -0.2114 25 6 5.9630 -7.4299 0.5926 26 1 6.7858 -8.1443 0.5655 27 8 5.5604 -7.2164 1.9471 28 6 3.0987 -3.3465 -0.0011 29 6 2.0515 -2.4747 0.0041 30 6 2.2845 -1.1012 0.0017 31 1 -0.3633 0.0015 1.0276 32 1 -0.3634 0.8892 -0.5153 33 1 -0.3634 -0.8909 -0.5125 34 1 5.6884 -1.1422 -0.0158 35 1 4.3879 -5.4805 -0.0091 36 1 7.2254 -5.3962 -1.8887 37 1 7.6940 -7.0617 -1.4682 38 1 6.0563 -7.1362 -3.2871 39 1 4.9300 -6.1152 -2.3563 40 1 2.3805 -10.4212 -0.9115 41 1 4.5169 -8.9712 0.1592 42 1 3.9261 -7.3122 -0.1086 43 1 5.2596 -8.0167 2.3988 44 1 2.9111 -4.4101 -0.0001 45 1 1.0386 -2.8494 0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090358365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:28 Heat of formation + Delta-G solvation = 59.121535 kcal Electronic energy + Delta-G solvation = -30378.954259 eV Core-core repulsion = 26206.442316 eV Total energy + Delta-G solvation = -4172.511943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.30834 -40.06397 -38.25070 -37.04541 -35.33899 -34.98814 -34.18197 -32.18113 -30.97403 -30.71957 -29.47959 -28.87609 -27.82595 -25.55372 -24.43574 -23.53225 -22.39807 -21.86268 -21.43309 -20.91325 -18.87649 -18.41195 -17.63596 -17.12617 -16.64009 -16.39591 -16.39178 -15.87561 -15.08087 -14.99507 -14.63611 -14.45509 -14.24523 -13.92839 -13.85386 -13.72798 -13.49634 -13.41854 -13.12492 -12.76423 -12.55961 -12.35588 -12.10524 -12.03339 -11.83747 -11.71254 -11.13186 -11.06741 -11.00975 -10.94718 -10.89163 -10.48345 -10.25755 -10.05253 -9.84112 -9.61948 -9.38781 -9.16477 -8.77417 -8.62952 -8.50628 -6.85159 -5.95365 -3.38252 0.22633 0.69098 1.77515 1.94457 2.82876 3.27924 3.29719 3.36409 3.37067 3.70183 3.84599 4.06763 4.33087 4.35547 4.54477 4.61365 4.66723 4.73218 4.89523 4.92403 5.01594 5.17801 5.21879 5.35022 5.42402 5.61141 5.66555 5.70695 5.78221 5.88779 5.93619 5.98719 5.99821 6.18396 6.20591 6.34260 6.39400 6.42460 6.67007 6.74833 6.88594 6.99164 7.33592 7.65783 7.71276 7.79456 8.04459 8.28290 8.43681 9.03600 9.66264 10.21668 11.12778 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.002757 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.226513 B =10153.354105 C =11096.506842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.399 5.399 3 N -0.012 5.012 4 N -0.208 5.208 5 C -0.029 4.029 6 C 0.032 3.968 7 C -0.143 4.143 8 C 0.561 3.439 9 O -0.545 6.545 10 N -0.698 5.698 11 C 0.166 3.834 12 H 0.081 0.919 13 C -0.145 4.145 14 C 0.145 3.855 15 N -0.588 5.588 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.146 3.854 25 C 0.066 3.934 26 H 0.063 0.937 27 O -0.573 6.573 28 C -0.034 4.034 29 C -0.127 4.127 30 C 0.105 3.895 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.023 0.977 43 H 0.376 0.624 44 H 0.145 0.855 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 13.020 4.324 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.194 5.194 3 N 0.008 4.992 4 N -0.088 5.088 5 C -0.153 4.153 6 C 0.009 3.991 7 C -0.149 4.149 8 C 0.348 3.652 9 O -0.424 6.424 10 N -0.349 5.349 11 C 0.061 3.939 12 H 0.099 0.901 13 C -0.186 4.186 14 C 0.019 3.981 15 N -0.312 5.312 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.019 3.981 25 C 0.005 3.995 26 H 0.081 0.919 27 O -0.377 6.377 28 C -0.056 4.056 29 C -0.149 4.149 30 C -0.017 4.017 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.171 0.829 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.041 0.959 43 H 0.223 0.777 44 H 0.162 0.838 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.260 15.353 4.212 16.480 hybrid contribution -1.046 -2.752 -0.140 2.948 sum -5.306 12.600 4.072 14.266 Atomic orbital electron populations 1.22027 0.72696 1.05340 1.04185 1.50092 1.07885 1.03500 1.57890 1.81617 0.94063 1.07620 1.15890 1.74852 1.11199 1.10475 1.12230 1.19775 0.93096 0.90132 1.12257 1.20548 0.98409 0.89899 0.90233 1.19785 0.93774 0.93372 1.08009 1.17919 0.88104 0.82457 0.76721 1.90755 1.22089 1.78692 1.50901 1.45893 1.10970 1.04874 1.73167 1.20853 0.88856 0.87659 0.96519 0.90058 1.22409 1.00230 1.01059 0.94856 1.20929 0.92955 0.89249 0.95007 1.43974 1.74435 1.06926 1.05859 1.19223 1.11740 0.93584 1.13790 0.91355 1.25039 0.94798 0.99463 1.00241 1.70002 1.11177 1.33498 1.40062 0.86266 0.76881 0.84887 0.78610 1.21389 1.21740 1.20363 1.21394 0.91292 1.01393 0.84004 1.22951 0.99580 0.95272 0.81704 0.91898 1.86417 1.87599 1.38100 1.25598 1.21045 0.90866 1.00462 0.93217 1.19705 1.00687 0.87871 1.06665 1.19497 0.90895 0.90587 1.00746 0.89898 0.88456 0.88788 0.82910 0.75914 0.91542 0.91014 0.92410 0.96152 0.93534 0.88879 0.95910 0.77712 0.83755 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.52 59.84 0.69 1.19 16 2 N -0.40 -4.13 4.11 -65.43 -0.27 -4.40 16 3 N -0.01 -0.15 13.72 60.35 0.83 0.68 16 4 N -0.21 -2.98 12.40 32.14 0.40 -2.58 16 5 C -0.03 -0.39 7.26 -84.77 -0.62 -1.01 16 6 C 0.03 0.43 9.64 -38.76 -0.37 0.06 16 7 C -0.14 -1.91 5.87 -105.02 -0.62 -2.53 16 8 C 0.56 8.95 7.73 -12.38 -0.10 8.86 16 9 O -0.55 -10.18 15.97 5.31 0.08 -10.09 16 10 N -0.70 -11.02 4.10 -54.75 -0.22 -11.24 16 11 C 0.17 2.81 2.47 -67.89 -0.17 2.65 16 12 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.15 -2.48 5.77 -26.63 -0.15 -2.63 16 14 C 0.14 2.80 6.26 -3.73 -0.02 2.78 16 15 N -0.59 -13.19 2.99 -172.33 -0.52 -13.71 16 16 C -0.25 -6.41 9.59 -15.06 -0.14 -6.55 16 17 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -23.82 11.19 55.49 0.62 -23.20 16 20 Si 0.90 20.33 29.59 -169.99 -5.03 15.30 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.15 3.01 4.64 -3.71 -0.02 2.99 16 25 C 0.07 1.14 3.36 -26.61 -0.09 1.06 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 O -0.57 -9.14 13.21 -35.23 -0.47 -9.61 16 28 C -0.03 -0.38 9.46 -39.54 -0.37 -0.75 16 29 C -0.13 -1.25 9.97 -39.89 -0.40 -1.65 16 30 C 0.10 1.21 6.93 -84.10 -0.58 0.62 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.15 2.02 7.62 -52.49 -0.40 1.62 16 35 H 0.40 6.13 4.87 -40.82 -0.20 5.93 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 39 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 40 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 41 H 0.09 2.17 6.04 -51.93 -0.31 1.86 16 42 H 0.02 0.48 6.65 -51.93 -0.35 0.14 16 43 H 0.38 4.75 9.08 45.56 0.41 5.16 16 44 H 0.14 1.47 6.36 -52.49 -0.33 1.14 16 45 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -31.85 370.93 -6.92 -38.78 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.89 Total: 9.41 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.05 Total: 5.08 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.84 Total: -54.46 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.38 Total: -19.70 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -6.92 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.898 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds