Wall clock time and date at job start Wed Apr 1 2020 03:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40227 * 126.65750 * 2 1 4 4 N 1.28647 * 109.50784 * 180.28307 * 3 2 1 5 5 C 1.35427 * 110.13157 * 359.78030 * 4 3 2 6 6 C 1.39794 * 133.04187 * 179.97438 * 5 4 3 7 7 C 1.38887 * 119.55473 * 180.02562 * 6 5 4 8 8 C 1.47720 * 119.85902 * 179.97438 * 7 6 5 9 9 O 1.21563 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99695 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99617 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46125 * 35.00270 * 11 10 8 13 13 C 1.53044 * 109.46117 * 275.02775 * 11 10 8 14 14 C 1.53155 * 109.32906 * 301.36503 * 13 11 10 15 15 N 1.46932 * 108.76760 * 305.34910 * 14 13 11 16 16 C 1.36927 * 120.63466 * 233.58886 * 15 14 13 17 17 H 1.08000 * 119.99819 * 27.69978 * 16 15 14 18 18 C 1.38817 * 120.00296 * 207.69892 * 16 15 14 19 19 N 1.31618 * 119.99960 * 17.35912 * 18 16 15 20 20 Si 1.86797 * 120.00120 * 197.35945 * 18 16 15 21 21 H 1.48490 * 109.47287 * 89.99745 * 20 18 16 22 22 H 1.48499 * 109.46925 * 209.99946 * 20 18 16 23 23 H 1.48503 * 109.46989 * 329.99618 * 20 18 16 24 24 C 1.46927 * 118.73488 * 53.61585 * 15 14 13 25 25 C 1.53042 * 109.45722 * 154.97837 * 11 10 8 26 26 H 1.08995 * 109.49575 * 178.60821 * 25 11 10 27 27 O 1.42903 * 109.49662 * 298.70381 * 25 11 10 28 28 C 1.40255 * 120.27557 * 359.97266 * 7 6 5 29 29 C 1.36261 * 120.45086 * 0.02562 * 28 7 6 30 30 C 1.37272 * 126.66082 * 179.91086 * 2 1 3 31 31 H 1.08999 * 109.47225 * 270.08405 * 1 2 3 32 32 H 1.09003 * 109.47629 * 30.09187 * 1 2 3 33 33 H 1.09007 * 109.47114 * 150.09092 * 1 2 3 34 34 H 1.07992 * 120.22230 * 0.04410 * 6 5 4 35 35 H 0.97000 * 119.99686 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49006 * 61.29960 * 13 11 10 37 37 H 1.08997 * 109.49551 * 181.39296 * 13 11 10 38 38 H 1.09000 * 109.59081 * 185.57050 * 14 13 11 39 39 H 1.09001 * 109.59628 * 65.13839 * 14 13 11 40 40 H 0.96991 * 120.00416 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58644 * 186.60321 * 24 15 14 42 42 H 1.09007 * 109.70794 * 66.24445 * 24 15 14 43 43 H 0.96699 * 114.00325 * 180.02562 * 27 25 11 44 44 H 1.07996 * 119.77418 * 179.97438 * 28 7 6 45 45 H 1.08005 * 119.92218 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1249 0.0000 4 7 3.5314 0.7456 -0.0060 5 6 3.6018 -0.6068 -0.0054 6 6 4.6718 -1.5065 -0.0106 7 6 4.4186 -2.8721 -0.0088 8 6 5.5441 -3.8288 -0.0149 9 8 6.6890 -3.4203 -0.0211 10 7 5.3016 -5.1546 -0.0136 11 6 6.4178 -6.1034 -0.0202 12 1 7.2431 -5.6972 0.5645 13 6 6.8798 -6.3371 -1.4604 14 6 5.7085 -6.8751 -2.2876 15 7 5.1718 -8.0716 -1.6248 16 6 5.0380 -9.2487 -2.3113 17 1 5.6910 -9.4656 -3.1437 18 6 4.0629 -10.1633 -1.9375 19 7 3.0616 -9.7821 -1.1730 20 14 4.1719 -11.9350 -2.5193 21 1 4.9455 -12.7327 -1.5344 22 1 2.8042 -12.4988 -2.6479 23 1 4.8527 -11.9818 -3.8382 24 6 4.7810 -7.9807 -0.2114 25 6 5.9630 -7.4299 0.5926 26 1 6.7858 -8.1443 0.5655 27 8 5.5604 -7.2164 1.9471 28 6 3.0987 -3.3465 -0.0011 29 6 2.0515 -2.4747 0.0041 30 6 2.2845 -1.1012 0.0017 31 1 -0.3633 0.0015 1.0276 32 1 -0.3634 0.8892 -0.5153 33 1 -0.3634 -0.8909 -0.5125 34 1 5.6884 -1.1422 -0.0158 35 1 4.3879 -5.4805 -0.0091 36 1 7.2254 -5.3962 -1.8887 37 1 7.6940 -7.0617 -1.4682 38 1 6.0563 -7.1362 -3.2871 39 1 4.9300 -6.1152 -2.3563 40 1 2.3805 -10.4212 -0.9115 41 1 4.5169 -8.9712 0.1592 42 1 3.9261 -7.3122 -0.1086 43 1 5.2596 -8.0167 2.3988 44 1 2.9111 -4.4101 -0.0001 45 1 1.0386 -2.8494 0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090358365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:25 Heat of formation + Delta-G solvation = 35.574118 kcal Electronic energy + Delta-G solvation = -30379.975351 eV Core-core repulsion = 26206.442316 eV Total energy + Delta-G solvation = -4173.533035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -43.21698 -41.35950 -39.58050 -38.13663 -36.81162 -35.81221 -35.65744 -33.77340 -32.04313 -31.79517 -30.91043 -30.33366 -28.47792 -27.24081 -25.58236 -24.46209 -23.93375 -23.43069 -22.31192 -22.07076 -20.32253 -19.53661 -18.79420 -18.45506 -18.03202 -17.52881 -17.22219 -17.10145 -16.73524 -16.25437 -15.86120 -15.79164 -15.41265 -15.28950 -15.14981 -14.95544 -14.46877 -14.35498 -14.14588 -13.84303 -13.83390 -13.55911 -13.46891 -13.24668 -13.06498 -12.84400 -12.76241 -12.64974 -12.63090 -12.13797 -11.94383 -11.90930 -11.78995 -11.73199 -11.26126 -11.05977 -10.86640 -10.54449 -10.17127 -9.98138 -9.44285 -8.66825 -7.86502 -5.30829 -0.69964 -0.27830 1.02851 1.05526 1.50073 1.53599 1.59997 1.72286 2.08521 2.52788 2.64402 2.92510 3.17820 3.30495 3.34531 3.46902 3.65713 3.70009 3.81299 3.95178 3.98960 4.17809 4.23874 4.31522 4.37232 4.41447 4.45099 4.51094 4.65584 4.74614 4.76689 4.82257 4.92077 4.99566 5.06101 5.09091 5.13410 5.20979 5.31933 5.36941 5.53245 5.57601 5.63791 5.70370 6.38913 6.53341 6.78582 6.87671 7.16521 7.18204 7.84279 8.35500 9.18812 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.002757 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.226513 B =10153.354105 C =11096.506842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.026 5.026 4 N -0.240 5.240 5 C -0.047 4.047 6 C 0.022 3.978 7 C -0.147 4.147 8 C 0.562 3.438 9 O -0.577 6.577 10 N -0.693 5.693 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.133 4.133 14 C 0.146 3.854 15 N -0.601 5.601 16 C -0.263 4.263 17 H 0.065 0.935 18 C -0.040 4.040 19 N -0.925 5.925 20 Si 0.959 3.041 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.157 3.843 25 C 0.083 3.917 26 H 0.062 0.938 27 O -0.573 6.573 28 C -0.039 4.039 29 C -0.105 4.105 30 C 0.101 3.899 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.407 0.593 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.251 0.749 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.392 0.608 44 H 0.156 0.844 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 12.851 4.484 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.006 5.006 4 N -0.119 5.119 5 C -0.171 4.171 6 C -0.001 4.001 7 C -0.154 4.154 8 C 0.350 3.650 9 O -0.458 6.458 10 N -0.344 5.344 11 C 0.063 3.937 12 H 0.094 0.906 13 C -0.173 4.173 14 C 0.021 3.979 15 N -0.326 5.326 16 C -0.393 4.393 17 H 0.082 0.918 18 C -0.236 4.236 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.030 3.970 25 C 0.022 3.978 26 H 0.080 0.920 27 O -0.379 6.379 28 C -0.061 4.061 29 C -0.127 4.127 30 C -0.022 4.022 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.241 0.759 44 H 0.174 0.826 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.921 15.204 4.381 16.894 hybrid contribution -0.642 -2.638 -0.180 2.721 sum -6.562 12.566 4.200 14.785 Atomic orbital electron populations 1.22572 0.69548 1.07367 1.06095 1.50494 1.09415 1.02367 1.55707 1.81521 0.94140 1.08812 1.16102 1.74833 1.12063 1.11150 1.13825 1.19932 0.94186 0.90098 1.12908 1.20457 0.98253 0.90164 0.91233 1.19599 0.93985 0.92612 1.09160 1.18262 0.88355 0.82605 0.75749 1.90734 1.23589 1.79131 1.52389 1.45819 1.10815 1.04764 1.73047 1.20758 0.89140 0.87584 0.96232 0.90555 1.22267 0.99305 1.01209 0.94555 1.20970 0.93551 0.88252 0.95129 1.44156 1.74617 1.07170 1.06676 1.19447 1.11365 0.94756 1.13762 0.91767 1.25620 0.94781 1.02292 1.00920 1.70108 1.11644 1.34110 1.41149 0.85390 0.76295 0.81223 0.78227 1.21305 1.22312 1.19968 1.21226 0.92306 0.99863 0.83569 1.22608 0.97971 0.95214 0.82002 0.92023 1.86399 1.87560 1.39335 1.24653 1.21143 0.90067 1.01290 0.93597 1.20045 1.02106 0.86618 1.03941 1.19719 0.90319 0.91535 1.00642 0.87956 0.87109 0.86209 0.83917 0.75434 0.90996 0.90614 0.92668 0.96021 0.93948 0.91584 0.96464 0.75904 0.82604 0.80396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.52 127.77 1.47 2.02 16 2 N -0.38 -7.07 4.11 -360.94 -1.48 -8.55 16 3 N -0.03 -0.64 13.72 37.02 0.51 -0.13 16 4 N -0.24 -6.92 12.40 -52.21 -0.65 -7.57 16 5 C -0.05 -1.26 7.26 39.57 0.29 -0.97 16 6 C 0.02 0.61 9.64 22.80 0.22 0.83 16 7 C -0.15 -3.86 5.87 -20.13 -0.12 -3.98 16 8 C 0.56 17.77 7.73 86.75 0.67 18.45 16 9 O -0.58 -21.76 15.97 -3.91 -0.06 -21.82 16 10 N -0.69 -21.31 4.10 -445.39 -1.83 -23.13 16 11 C 0.17 5.55 2.47 45.02 0.11 5.67 16 12 H 0.08 2.66 7.58 -2.39 -0.02 2.64 16 13 C -0.13 -4.43 5.77 30.66 0.18 -4.25 16 14 C 0.15 5.56 6.26 86.35 0.54 6.10 16 15 N -0.60 -26.71 2.99 -699.14 -2.09 -28.80 16 16 C -0.26 -13.19 9.59 84.04 0.81 -12.38 16 17 H 0.06 3.21 7.89 -2.91 -0.02 3.18 16 18 C -0.04 -2.02 4.91 84.86 0.42 -1.60 16 19 N -0.92 -48.63 11.19 21.65 0.24 -48.39 16 20 Si 0.96 41.54 29.59 68.60 2.03 43.57 16 21 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.30 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.16 6.38 4.64 86.36 0.40 6.78 16 25 C 0.08 2.81 3.36 30.67 0.10 2.92 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 O -0.57 -17.43 13.21 -148.98 -1.97 -19.40 16 28 C -0.04 -0.79 9.46 22.30 0.21 -0.58 16 29 C -0.11 -1.73 9.97 22.07 0.22 -1.51 16 30 C 0.10 2.12 6.93 39.15 0.27 2.39 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.14 4.04 7.62 -2.91 -0.02 4.01 16 35 H 0.41 11.88 4.87 -92.71 -0.45 11.43 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 39 H 0.02 0.83 7.74 -2.39 -0.02 0.81 16 40 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 41 H 0.07 3.07 6.04 -2.39 -0.01 3.06 16 42 H 0.02 0.72 6.65 -2.38 -0.02 0.71 16 43 H 0.39 9.27 9.08 -74.06 -0.67 8.60 16 44 H 0.16 2.80 6.36 -2.91 -0.02 2.78 16 45 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.73 370.93 0.42 -68.31 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.06 Total: 26.06 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 5.79 Total: 19.87 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -5.30 Total: -116.58 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -2.03 Total: -41.22 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -68.73 0.42 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.880 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds