Wall clock time and date at job start Wed Apr 1 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36174 * 126.23781 * 2 1 4 4 N 1.30055 * 110.11188 * 180.02562 * 3 2 1 5 5 C 1.35770 * 109.43933 * 359.97438 * 4 3 2 6 6 C 1.39488 * 133.75076 * 179.97438 * 5 4 3 7 7 C 1.39680 * 118.05389 * 179.97438 * 6 5 4 8 8 C 1.47687 * 120.38236 * 179.97438 * 7 6 5 9 9 O 1.21576 * 119.99922 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00010 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46610 * 35.02180 * 11 10 8 13 13 C 1.53047 * 109.45636 * 275.05915 * 11 10 8 14 14 C 1.53183 * 109.31287 * 301.35039 * 13 11 10 15 15 N 1.46927 * 108.77583 * 305.36215 * 14 13 11 16 16 C 1.36938 * 120.63057 * 233.60883 * 15 14 13 17 17 H 1.08005 * 119.99775 * 27.68785 * 16 15 14 18 18 C 1.38808 * 120.00087 * 207.67803 * 16 15 14 19 19 N 1.31622 * 120.00071 * 17.36651 * 18 16 15 20 20 Si 1.86803 * 120.00061 * 197.36135 * 18 16 15 21 21 H 1.48504 * 109.46880 * 90.00391 * 20 18 16 22 22 H 1.48502 * 109.46907 * 210.00095 * 20 18 16 23 23 H 1.48499 * 109.47470 * 330.00452 * 20 18 16 24 24 C 1.46925 * 118.73738 * 53.61418 * 15 14 13 25 25 C 1.53042 * 109.45685 * 154.99741 * 11 10 8 26 26 H 1.09003 * 109.49170 * 178.63368 * 25 11 10 27 27 O 1.42903 * 109.49888 * 298.69618 * 25 11 10 28 28 C 1.39982 * 119.23505 * 0.25229 * 7 6 5 29 29 N 1.31385 * 121.15566 * 359.44140 * 28 7 6 30 30 C 1.32545 * 121.79392 * 0.60384 * 29 28 7 31 31 H 1.09003 * 109.46858 * 89.97834 * 1 2 3 32 32 H 1.09005 * 109.47039 * 209.97127 * 1 2 3 33 33 H 1.08997 * 109.47584 * 329.97448 * 1 2 3 34 34 H 1.07999 * 124.93969 * 0.04949 * 3 2 1 35 35 H 1.07997 * 120.97142 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00040 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.49264 * 61.30141 * 13 11 10 38 38 H 1.09000 * 109.49335 * 181.39352 * 13 11 10 39 39 H 1.08996 * 109.59024 * 65.15012 * 14 13 11 40 40 H 1.09003 * 109.58394 * 185.58071 * 14 13 11 41 41 H 0.97006 * 120.00173 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58701 * 186.60514 * 24 15 14 43 43 H 1.08995 * 109.59097 * 66.18028 * 24 15 14 44 44 H 0.96692 * 113.99992 * 180.02562 * 27 25 11 45 45 H 1.08001 * 119.42221 * 179.72252 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5978 -0.6183 -0.0004 6 6 4.6594 -1.5231 -0.0012 7 6 4.3599 -2.8874 -0.0001 8 6 5.4441 -3.8902 -0.0014 9 8 6.6053 -3.5299 -0.0040 10 7 5.1463 -5.2046 -0.0009 11 6 6.2219 -6.1993 -0.0028 12 1 7.0610 -5.8281 0.5854 13 6 6.6800 -6.4520 -1.4411 14 6 5.4904 -6.9408 -2.2732 15 7 4.9013 -8.1136 -1.6127 16 6 4.7215 -9.2844 -2.2999 17 1 5.3686 -9.5284 -3.1295 18 6 3.7078 -10.1575 -1.9301 19 7 2.7199 -9.7349 -1.1700 20 14 3.7456 -11.9324 -2.5115 21 1 4.4812 -12.7614 -1.5231 22 1 2.3561 -12.4389 -2.6459 23 1 4.4295 -12.0079 -3.8274 24 6 4.5087 -8.0063 -0.2010 25 6 5.7093 -7.5055 0.6080 26 1 6.5018 -8.2536 0.5847 27 8 5.3104 -7.2753 1.9608 28 6 3.0202 -3.2932 -0.0036 29 7 2.0437 -2.4142 0.0030 30 6 2.2783 -1.1097 0.0015 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.9215 2.1206 0.0008 35 1 5.6830 -1.1787 -0.0026 36 1 4.2199 -5.4919 0.0008 37 1 7.0666 -5.5264 -1.8677 38 1 7.4632 -7.2101 -1.4455 39 1 4.7447 -6.1490 -2.3451 40 1 5.8312 -7.2163 -3.2712 41 1 2.0112 -10.3450 -0.9119 42 1 4.2018 -8.9849 0.1684 43 1 3.6830 -7.3015 -0.1038 44 1 4.9744 -8.0622 2.4111 45 1 2.7851 -4.3473 -0.0073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090477356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:50 Heat of formation + Delta-G solvation = 37.692291 kcal Electronic energy + Delta-G solvation = -30431.812782 eV Core-core repulsion = 26258.371597 eV Total energy + Delta-G solvation = -4173.441185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59675 -40.07605 -38.50876 -37.50584 -35.30402 -34.79862 -34.13680 -32.33816 -31.80440 -30.29731 -29.36211 -28.82687 -27.53119 -25.47745 -24.37686 -23.89098 -22.36663 -21.82677 -21.15322 -20.86541 -18.83599 -18.26402 -17.92982 -17.23584 -16.76045 -16.54237 -16.41155 -15.94176 -15.15201 -15.01584 -14.69918 -14.52215 -14.19830 -13.91292 -13.83021 -13.69837 -13.56068 -13.36506 -13.14097 -13.05370 -12.74445 -12.54029 -12.27107 -11.87101 -11.69392 -11.21301 -11.09122 -11.04156 -10.95806 -10.86176 -10.45326 -10.22458 -10.01793 -9.96612 -9.61948 -9.37794 -9.29197 -8.96572 -8.80773 -8.67334 -8.54433 -6.81095 -5.91247 -3.34346 0.57915 0.70143 2.02488 2.48726 3.00254 3.30144 3.31456 3.39114 3.39804 3.81786 3.83281 4.02207 4.25869 4.38459 4.58061 4.61264 4.70719 4.77662 4.79393 4.90337 5.08386 5.21637 5.25822 5.38629 5.45291 5.60425 5.69340 5.81387 5.89204 5.91815 5.95339 6.02019 6.22557 6.27814 6.42060 6.44824 6.59526 6.70023 6.78228 6.91274 7.03193 7.37859 7.40030 7.60382 7.69298 7.80834 8.08137 8.32142 8.44876 9.07370 9.70117 10.25566 11.16828 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002795 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.712524 B =10016.567841 C =10976.697340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.269 3.731 4 N -0.480 5.480 5 C -0.011 4.011 6 C 0.046 3.954 7 C -0.193 4.193 8 C 0.568 3.432 9 O -0.545 6.545 10 N -0.697 5.697 11 C 0.166 3.834 12 H 0.082 0.918 13 C -0.145 4.145 14 C 0.145 3.855 15 N -0.588 5.588 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.145 3.855 25 C 0.066 3.934 26 H 0.063 0.937 27 O -0.573 6.573 28 C 0.180 3.820 29 N -0.482 5.482 30 C 0.254 3.746 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.223 0.777 35 H 0.155 0.845 36 H 0.403 0.597 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.093 0.907 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 17.333 4.443 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.178 5.178 3 C -0.018 4.018 4 N -0.198 5.198 5 C -0.131 4.131 6 C 0.018 3.982 7 C -0.201 4.201 8 C 0.354 3.646 9 O -0.424 6.424 10 N -0.349 5.349 11 C 0.062 3.938 12 H 0.100 0.900 13 C -0.185 4.185 14 C 0.018 3.982 15 N -0.312 5.312 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.019 3.981 25 C 0.005 3.995 26 H 0.081 0.919 27 O -0.377 6.377 28 C 0.010 3.990 29 N -0.195 5.195 30 C 0.019 3.981 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.239 0.761 35 H 0.173 0.827 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.042 0.958 44 H 0.223 0.777 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.257 18.395 4.341 19.179 hybrid contribution -0.796 -1.863 -0.172 2.034 sum -4.053 16.532 4.169 17.525 Atomic orbital electron populations 1.22059 0.75106 1.05032 1.03937 1.45050 1.07906 1.04567 1.60297 1.25461 0.84868 0.93079 0.98392 1.70473 1.18291 1.10335 1.20747 1.19529 0.93004 0.91452 1.09089 1.20825 0.98989 0.89532 0.88815 1.20737 0.95155 0.94247 1.09993 1.17733 0.87834 0.82361 0.76675 1.90753 1.20083 1.80582 1.50980 1.45891 1.11041 1.04768 1.73177 1.20860 0.89584 0.86839 0.96565 0.90041 1.22415 1.00164 1.01098 0.94862 1.20933 0.92520 0.89727 0.94985 1.43974 1.72381 1.08803 1.06038 1.19217 1.10254 0.94918 1.13990 0.91371 1.25045 0.94776 0.99467 1.00262 1.70012 1.10340 1.34064 1.40209 0.86269 0.76831 0.84973 0.78578 1.21406 1.21746 1.20385 1.21406 0.91210 1.01541 0.83980 1.22951 0.99511 0.95260 0.81772 0.91884 1.86416 1.86249 1.39270 1.25781 1.22841 0.86489 0.98551 0.91090 1.66391 1.37282 0.98981 1.16822 1.19140 0.89133 0.88190 1.01640 0.90409 0.89008 0.89189 0.76079 0.82727 0.75940 0.91560 0.91000 0.96147 0.92414 0.93517 0.88841 0.95825 0.77697 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.18 59.84 0.67 1.10 16 2 N -0.49 -4.61 3.19 -124.99 -0.40 -5.01 16 3 C 0.27 2.27 12.50 -89.70 -1.12 1.15 16 4 N -0.48 -6.03 11.29 -12.02 -0.14 -6.17 16 5 C -0.01 -0.16 7.23 -84.69 -0.61 -0.77 16 6 C 0.05 0.67 9.75 -38.58 -0.38 0.29 16 7 C -0.19 -2.86 5.89 -104.85 -0.62 -3.47 16 8 C 0.57 9.49 7.74 -12.40 -0.10 9.39 16 9 O -0.55 -10.47 16.06 5.30 0.09 -10.38 16 10 N -0.70 -11.49 4.11 -54.75 -0.22 -11.71 16 11 C 0.17 2.89 2.47 -67.88 -0.17 2.73 16 12 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.15 -2.53 5.77 -26.61 -0.15 -2.69 16 14 C 0.14 2.87 6.26 -3.71 -0.02 2.85 16 15 N -0.59 -13.50 2.99 -172.33 -0.52 -14.02 16 16 C -0.25 -6.54 9.58 -15.06 -0.14 -6.68 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -24.34 11.19 55.49 0.62 -23.72 16 20 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 C 0.15 3.08 4.64 -3.71 -0.02 3.06 16 25 C 0.07 1.18 3.36 -26.61 -0.09 1.09 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 O -0.57 -9.41 13.21 -35.23 -0.47 -9.88 16 28 C 0.18 2.50 10.69 -17.09 -0.18 2.32 16 29 N -0.48 -6.86 10.36 -11.96 -0.12 -6.98 16 30 C 0.25 3.40 7.99 -155.63 -1.24 2.16 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.22 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.16 2.17 7.72 -52.49 -0.41 1.77 16 36 H 0.40 6.47 4.90 -40.82 -0.20 6.27 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.09 2.23 6.04 -51.93 -0.31 1.91 16 43 H 0.02 0.52 6.64 -51.93 -0.34 0.17 16 44 H 0.38 4.92 9.08 45.56 0.41 5.34 16 45 H 0.17 2.16 6.39 -52.49 -0.34 1.83 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.67 370.40 -9.77 -43.44 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.90 Total: 10.68 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -4.26 Total: 12.52 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.78 Total: -67.61 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.38 Total: -20.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.67 -9.77 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090477356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.128 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds