Wall clock time and date at job start Wed Apr 1 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36174 * 126.23781 * 2 1 4 4 N 1.30055 * 110.11188 * 180.02562 * 3 2 1 5 5 C 1.35770 * 109.43933 * 359.97438 * 4 3 2 6 6 C 1.39488 * 133.75076 * 179.97438 * 5 4 3 7 7 C 1.39680 * 118.05389 * 179.97438 * 6 5 4 8 8 C 1.47687 * 120.38236 * 179.97438 * 7 6 5 9 9 O 1.21576 * 119.99922 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00010 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46610 * 35.02180 * 11 10 8 13 13 C 1.53047 * 109.45636 * 275.05915 * 11 10 8 14 14 C 1.53183 * 109.31287 * 301.35039 * 13 11 10 15 15 N 1.46927 * 108.77583 * 305.36215 * 14 13 11 16 16 C 1.36938 * 120.63057 * 233.60883 * 15 14 13 17 17 H 1.08005 * 119.99775 * 27.68785 * 16 15 14 18 18 C 1.38808 * 120.00087 * 207.67803 * 16 15 14 19 19 N 1.31622 * 120.00071 * 17.36651 * 18 16 15 20 20 Si 1.86803 * 120.00061 * 197.36135 * 18 16 15 21 21 H 1.48504 * 109.46880 * 90.00391 * 20 18 16 22 22 H 1.48502 * 109.46907 * 210.00095 * 20 18 16 23 23 H 1.48499 * 109.47470 * 330.00452 * 20 18 16 24 24 C 1.46925 * 118.73738 * 53.61418 * 15 14 13 25 25 C 1.53042 * 109.45685 * 154.99741 * 11 10 8 26 26 H 1.09003 * 109.49170 * 178.63368 * 25 11 10 27 27 O 1.42903 * 109.49888 * 298.69618 * 25 11 10 28 28 C 1.39982 * 119.23505 * 0.25229 * 7 6 5 29 29 N 1.31385 * 121.15566 * 359.44140 * 28 7 6 30 30 C 1.32545 * 121.79392 * 0.60384 * 29 28 7 31 31 H 1.09003 * 109.46858 * 89.97834 * 1 2 3 32 32 H 1.09005 * 109.47039 * 209.97127 * 1 2 3 33 33 H 1.08997 * 109.47584 * 329.97448 * 1 2 3 34 34 H 1.07999 * 124.93969 * 0.04949 * 3 2 1 35 35 H 1.07997 * 120.97142 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00040 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.49264 * 61.30141 * 13 11 10 38 38 H 1.09000 * 109.49335 * 181.39352 * 13 11 10 39 39 H 1.08996 * 109.59024 * 65.15012 * 14 13 11 40 40 H 1.09003 * 109.58394 * 185.58071 * 14 13 11 41 41 H 0.97006 * 120.00173 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58701 * 186.60514 * 24 15 14 43 43 H 1.08995 * 109.59097 * 66.18028 * 24 15 14 44 44 H 0.96692 * 113.99992 * 180.02562 * 27 25 11 45 45 H 1.08001 * 119.42221 * 179.72252 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5978 -0.6183 -0.0004 6 6 4.6594 -1.5231 -0.0012 7 6 4.3599 -2.8874 -0.0001 8 6 5.4441 -3.8902 -0.0014 9 8 6.6053 -3.5299 -0.0040 10 7 5.1463 -5.2046 -0.0009 11 6 6.2219 -6.1993 -0.0028 12 1 7.0610 -5.8281 0.5854 13 6 6.6800 -6.4520 -1.4411 14 6 5.4904 -6.9408 -2.2732 15 7 4.9013 -8.1136 -1.6127 16 6 4.7215 -9.2844 -2.2999 17 1 5.3686 -9.5284 -3.1295 18 6 3.7078 -10.1575 -1.9301 19 7 2.7199 -9.7349 -1.1700 20 14 3.7456 -11.9324 -2.5115 21 1 4.4812 -12.7614 -1.5231 22 1 2.3561 -12.4389 -2.6459 23 1 4.4295 -12.0079 -3.8274 24 6 4.5087 -8.0063 -0.2010 25 6 5.7093 -7.5055 0.6080 26 1 6.5018 -8.2536 0.5847 27 8 5.3104 -7.2753 1.9608 28 6 3.0202 -3.2932 -0.0036 29 7 2.0437 -2.4142 0.0030 30 6 2.2783 -1.1097 0.0015 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.9215 2.1206 0.0008 35 1 5.6830 -1.1787 -0.0026 36 1 4.2199 -5.4919 0.0008 37 1 7.0666 -5.5264 -1.8677 38 1 7.4632 -7.2101 -1.4455 39 1 4.7447 -6.1490 -2.3451 40 1 5.8312 -7.2163 -3.2712 41 1 2.0112 -10.3450 -0.9119 42 1 4.2018 -8.9849 0.1684 43 1 3.6830 -7.3015 -0.1038 44 1 4.9744 -8.0622 2.4111 45 1 2.7851 -4.3473 -0.0073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090477356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:49 Heat of formation + Delta-G solvation = 14.182373 kcal Electronic energy + Delta-G solvation = -30432.832249 eV Core-core repulsion = 26258.371597 eV Total energy + Delta-G solvation = -4174.460651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.47971 -41.40911 -39.76701 -38.79610 -36.82712 -35.76846 -35.53299 -33.84864 -33.02401 -31.65952 -30.75538 -30.28085 -28.19407 -27.20246 -25.45980 -24.93705 -23.95560 -23.44866 -22.19087 -21.94049 -20.33718 -19.39628 -18.85677 -18.79759 -18.05039 -17.95822 -17.23100 -17.07832 -16.74205 -16.42439 -16.06725 -15.82527 -15.43981 -15.38333 -15.05004 -14.93326 -14.73270 -14.46597 -14.28509 -14.20260 -13.84110 -13.53088 -13.51076 -13.44636 -13.23287 -12.84697 -12.66847 -12.64904 -12.15951 -12.12278 -11.96226 -11.84470 -11.80015 -11.32415 -11.14815 -10.89911 -10.56000 -10.38704 -10.14544 -9.80286 -9.73656 -8.68378 -7.87343 -5.32387 -0.46516 -0.31347 1.28666 1.49292 1.52048 1.59266 1.63646 1.81338 2.04062 2.51803 2.69767 2.90112 3.16566 3.25182 3.29454 3.49878 3.61432 3.68266 3.70506 3.91882 4.01166 4.06979 4.17364 4.28046 4.30393 4.39914 4.43416 4.49380 4.71183 4.73735 4.76003 4.80151 4.92608 4.99772 5.00292 5.10957 5.19485 5.30703 5.34690 5.50712 5.62146 5.68722 5.89280 6.37504 6.45903 6.58029 6.59725 6.86245 7.11418 7.15283 7.82842 8.34308 9.18050 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002795 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.712524 B =10016.567841 C =10976.697340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.298 3.702 4 N -0.521 5.521 5 C -0.024 4.024 6 C 0.036 3.964 7 C -0.200 4.200 8 C 0.572 3.428 9 O -0.573 6.573 10 N -0.694 5.694 11 C 0.168 3.832 12 H 0.080 0.920 13 C -0.132 4.132 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.263 4.263 17 H 0.066 0.934 18 C -0.042 4.042 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.273 1.273 24 C 0.156 3.844 25 C 0.084 3.916 26 H 0.065 0.935 27 O -0.573 6.573 28 C 0.174 3.826 29 N -0.491 5.491 30 C 0.238 3.762 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.281 0.719 35 H 0.151 0.849 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.067 0.933 43 H 0.013 0.987 44 H 0.392 0.608 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 19.077 4.575 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.174 5.174 3 C 0.012 3.988 4 N -0.240 5.240 5 C -0.143 4.143 6 C 0.009 3.991 7 C -0.208 4.208 8 C 0.359 3.641 9 O -0.454 6.454 10 N -0.345 5.345 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.172 4.172 14 C 0.020 3.980 15 N -0.326 5.326 16 C -0.393 4.393 17 H 0.084 0.916 18 C -0.239 4.239 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.198 1.198 24 C 0.030 3.970 25 C 0.023 3.977 26 H 0.083 0.917 27 O -0.380 6.380 28 C 0.004 3.996 29 N -0.203 5.203 30 C 0.001 3.999 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.296 0.704 35 H 0.168 0.832 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.241 0.759 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.181 20.145 4.480 21.057 hybrid contribution -0.628 -2.224 -0.209 2.320 sum -4.810 17.921 4.270 19.041 Atomic orbital electron populations 1.22403 0.72456 1.06586 1.05157 1.45463 1.09434 1.03417 1.59085 1.26669 0.83533 0.94687 0.93896 1.70488 1.20770 1.09309 1.23430 1.19693 0.93166 0.92451 1.09016 1.20844 0.99228 0.89720 0.89348 1.20511 0.94827 0.93903 1.11558 1.17947 0.87867 0.82487 0.75765 1.90728 1.21278 1.80958 1.52416 1.45839 1.10911 1.04697 1.73052 1.20799 0.89757 0.86727 0.96409 0.90232 1.22269 0.99128 1.01421 0.94415 1.20981 0.93105 0.88654 0.95253 1.44169 1.72566 1.09078 1.06829 1.19470 1.09910 0.95976 1.13970 0.91583 1.25674 0.94691 1.02541 1.00944 1.70137 1.10833 1.34808 1.41451 0.85349 0.76232 0.81030 0.78282 1.21162 1.22405 1.19812 1.21231 0.92252 0.99868 0.83691 1.22609 0.97813 0.95344 0.81979 0.91689 1.86399 1.86257 1.40480 1.24862 1.22870 0.86200 0.98940 0.91545 1.66410 1.37201 0.99625 1.17063 1.19475 0.90036 0.88654 1.01758 0.89331 0.90207 0.84944 0.70391 0.83162 0.75695 0.90898 0.90318 0.96417 0.92517 0.93988 0.91511 0.96871 0.75900 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.18 127.77 1.43 1.97 16 2 N -0.48 -7.86 3.19 -549.35 -1.75 -9.61 16 3 C 0.30 3.99 12.50 180.03 2.25 6.24 16 4 N -0.52 -12.26 11.29 -191.94 -2.17 -14.42 16 5 C -0.02 -0.66 7.23 39.46 0.29 -0.38 16 6 C 0.04 1.08 9.75 22.92 0.22 1.31 16 7 C -0.20 -6.07 5.89 -20.01 -0.12 -6.19 16 8 C 0.57 19.44 7.74 86.74 0.67 20.11 16 9 O -0.57 -22.33 16.06 -3.96 -0.06 -22.39 16 10 N -0.69 -23.02 4.11 -445.41 -1.83 -24.85 16 11 C 0.17 5.79 2.47 45.02 0.11 5.90 16 12 H 0.08 2.84 7.58 -2.39 -0.02 2.82 16 13 C -0.13 -4.54 5.77 30.67 0.18 -4.36 16 14 C 0.15 5.77 6.26 86.36 0.54 6.31 16 15 N -0.60 -27.79 2.99 -699.12 -2.09 -29.89 16 16 C -0.26 -13.58 9.58 84.03 0.81 -12.77 16 17 H 0.07 3.37 7.89 -2.91 -0.02 3.35 16 18 C -0.04 -2.21 4.91 84.86 0.42 -1.80 16 19 N -0.93 -50.71 11.19 21.65 0.24 -50.47 16 20 Si 0.96 42.68 29.59 68.60 2.03 44.71 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.16 6.68 4.64 86.36 0.40 7.08 16 25 C 0.08 2.95 3.36 30.67 0.10 3.06 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 O -0.57 -18.41 13.21 -148.98 -1.97 -20.38 16 28 C 0.17 4.95 10.69 85.18 0.91 5.86 16 29 N -0.49 -13.90 10.36 -191.76 -1.99 -15.89 16 30 C 0.24 6.15 7.99 133.91 1.07 7.22 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.28 0.01 8.06 -2.91 -0.02 -0.02 16 35 H 0.15 4.44 7.72 -2.91 -0.02 4.42 16 36 H 0.41 13.20 4.90 -92.71 -0.45 12.74 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.02 0.72 7.74 -2.39 -0.02 0.70 16 40 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 41 H 0.25 13.41 8.31 -92.70 -0.77 12.64 16 42 H 0.07 3.23 6.04 -2.39 -0.01 3.22 16 43 H 0.01 0.59 6.64 -2.39 -0.02 0.58 16 44 H 0.39 9.92 9.08 -74.06 -0.67 9.24 16 45 H 0.18 4.62 6.39 -2.91 -0.02 4.60 16 Total: -1.00 -73.76 370.40 -0.38 -74.15 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.07 Total: 29.48 kcal Atomic # 6 Polarization: 30.28 SS G_CDS: 9.28 Total: 39.56 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -9.59 Total: -145.13 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.03 Total: -42.77 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.76 -0.38 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090477356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.328 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds