Wall clock time and date at job start Wed Apr 1 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35986 * 126.36012 * 2 1 4 4 N 1.30276 * 110.05904 * 179.97438 * 3 2 1 5 5 C 1.34659 * 109.66785 * 359.97438 * 4 3 2 6 6 C 1.37937 * 126.35411 * 179.97438 * 2 1 3 7 7 N 1.32115 * 133.81206 * 0.06460 * 6 2 1 8 8 C 1.31724 * 121.95045 * 179.97438 * 7 6 2 9 9 C 1.38343 * 121.54629 * 359.71483 * 8 7 6 10 10 C 1.39633 * 119.37378 * 0.55918 * 9 8 7 11 11 C 1.47761 * 121.07486 * 179.72511 * 10 9 8 12 12 O 1.21562 * 120.00324 * 179.72349 * 11 10 9 13 13 N 1.34783 * 119.99996 * 359.73046 * 11 10 9 14 14 C 1.46501 * 120.00125 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.44605 * 34.96564 * 14 13 11 16 16 C 1.53031 * 109.46140 * 274.99689 * 14 13 11 17 17 C 1.53187 * 109.31453 * 178.61416 * 16 14 13 18 18 N 1.46927 * 108.77692 * 54.63581 * 17 16 14 19 19 C 1.36935 * 120.63348 * 126.36646 * 18 17 16 20 20 H 1.08002 * 120.00059 * 332.63602 * 19 18 17 21 21 C 1.38814 * 119.99735 * 152.62901 * 19 18 17 22 22 N 1.31623 * 119.99528 * 159.37484 * 21 19 18 23 23 Si 1.86791 * 120.00184 * 339.37447 * 21 19 18 24 24 H 1.48496 * 109.47163 * 92.93311 * 23 21 19 25 25 H 1.48501 * 109.47160 * 212.93133 * 23 21 19 26 26 H 1.48496 * 109.47536 * 332.92809 * 23 21 19 27 27 C 1.46928 * 118.73577 * 306.39553 * 18 17 16 28 28 C 1.53043 * 109.45734 * 154.92897 * 14 13 11 29 29 H 1.08992 * 109.52386 * 61.42055 * 28 14 13 30 30 O 1.42902 * 109.49734 * 301.33517 * 28 14 13 31 31 H 1.08995 * 109.47857 * 270.04918 * 1 2 3 32 32 H 1.09006 * 109.47120 * 30.04720 * 1 2 3 33 33 H 1.08996 * 109.47365 * 150.04071 * 1 2 3 34 34 H 1.08005 * 124.96816 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.22721 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.31183 * 180.29328 * 9 8 7 37 37 H 0.97006 * 119.99672 * 359.97438 * 13 11 10 38 38 H 1.09008 * 109.49730 * 58.66431 * 16 14 13 39 39 H 1.09007 * 109.49985 * 298.56886 * 16 14 13 40 40 H 1.09002 * 109.59098 * 174.42156 * 17 16 14 41 41 H 1.09001 * 109.58978 * 294.70988 * 17 16 14 42 42 H 0.97001 * 119.99503 * 180.02562 * 22 21 19 43 43 H 1.09006 * 109.58532 * 173.39516 * 27 18 17 44 44 H 1.09003 * 109.58559 * 293.81573 * 27 18 17 45 45 H 0.96703 * 113.99874 * 180.16061 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0951 0.0000 4 7 3.5216 0.7294 0.0005 5 6 3.6007 -0.6148 0.0015 6 6 2.2826 -1.1109 0.0005 7 7 2.0570 -2.4126 0.0000 8 6 3.0392 -3.2904 0.0002 9 6 4.3645 -2.8935 -0.0049 10 6 4.6716 -1.5314 0.0014 11 6 6.0740 -1.0658 0.0023 12 8 6.3191 0.1249 0.0028 13 7 7.0814 -1.9612 0.0025 14 6 8.4717 -1.4995 0.0028 15 1 8.5506 -0.5858 0.5919 16 6 8.9163 -1.2195 -1.4345 17 6 10.3589 -0.7042 -1.4273 18 7 11.2030 -1.6711 -0.7122 19 6 12.3294 -2.1823 -1.2994 20 1 12.3919 -2.2554 -2.3751 21 6 13.3910 -2.6065 -0.5120 22 7 14.2777 -3.4477 -1.0006 23 14 13.5613 -1.9835 1.2407 24 1 12.8976 -2.9326 2.1701 25 1 15.0006 -1.8740 1.5895 26 1 12.9213 -0.6485 1.3560 27 6 10.8150 -2.0795 0.6448 28 6 9.3673 -2.5794 0.6144 29 1 9.3080 -3.4859 0.0121 30 8 8.9322 -2.8621 1.9459 31 1 -0.3634 0.0009 1.0276 32 1 -0.3634 0.8896 -0.5146 33 1 -0.3634 -0.8903 -0.5132 34 1 1.9254 2.1183 -0.0004 35 1 2.8044 -4.3446 -0.0006 36 1 5.1541 -3.6304 -0.0094 37 1 6.8857 -2.9113 0.0024 38 1 8.2635 -0.4671 -1.8772 39 1 8.8612 -2.1385 -2.0180 40 1 10.7139 -0.5972 -2.4523 41 1 10.3994 0.2618 -0.9239 42 1 15.0193 -3.7444 -0.4502 43 1 11.4709 -2.8800 0.9871 44 1 10.8931 -1.2268 1.3194 45 1 9.4577 -3.5375 2.3963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090566176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:02 Heat of formation + Delta-G solvation = 47.984315 kcal Electronic energy + Delta-G solvation = -30189.565858 eV Core-core repulsion = 26016.570969 eV Total energy + Delta-G solvation = -4172.994889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70534 -39.95214 -38.65569 -37.90573 -35.51044 -34.82048 -34.44950 -32.71270 -31.84671 -30.08634 -30.01004 -29.12144 -27.56090 -25.69653 -24.50963 -23.23045 -23.07400 -22.28650 -21.39279 -20.17902 -19.67965 -18.28730 -17.77880 -17.54080 -16.93678 -16.78421 -16.49283 -16.14872 -15.43481 -15.00135 -14.85077 -14.74493 -14.34203 -14.26507 -13.95097 -13.83425 -13.79201 -13.32900 -13.25108 -12.89142 -12.73978 -12.72715 -12.44014 -12.35591 -12.12722 -11.39645 -11.09143 -11.05759 -10.94726 -10.87070 -10.51769 -10.34285 -10.11879 -9.81283 -9.64985 -9.54041 -9.33057 -9.07396 -8.86055 -8.72790 -8.68104 -7.07614 -6.01736 -3.38772 0.15153 0.84743 1.95202 2.48711 2.91924 3.12250 3.24525 3.45293 3.49497 3.71414 3.74236 3.96288 4.20147 4.31641 4.44641 4.46678 4.52982 4.65452 4.68011 4.82712 4.91858 4.97477 5.13829 5.21757 5.28712 5.45003 5.51125 5.57155 5.61972 5.74658 5.78280 5.82420 6.03171 6.23014 6.26269 6.30013 6.40532 6.50726 6.55172 6.59055 6.70862 6.83616 7.47338 7.48641 7.63604 7.79186 7.94998 8.26157 8.34944 8.85427 9.63845 10.00126 11.13819 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.002433 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.510689 B =11505.420115 C =11810.243246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.487 5.487 3 C 0.271 3.729 4 N -0.461 5.461 5 C 0.053 3.947 6 C 0.231 3.769 7 N -0.469 5.469 8 C 0.132 3.868 9 C -0.150 4.150 10 C -0.028 4.028 11 C 0.551 3.449 12 O -0.504 6.504 13 N -0.710 5.710 14 C 0.164 3.836 15 H 0.091 0.909 16 C -0.141 4.141 17 C 0.148 3.852 18 N -0.602 5.602 19 C -0.262 4.262 20 H 0.089 0.911 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 0.881 3.119 24 H -0.290 1.290 25 H -0.301 1.301 26 H -0.269 1.269 27 C 0.102 3.898 28 C 0.080 3.920 29 H 0.064 0.936 30 O -0.571 6.571 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.396 0.604 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.570 1.617 2.683 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.180 5.180 3 C -0.015 4.015 4 N -0.177 5.177 5 C -0.071 4.071 6 C -0.005 4.005 7 N -0.182 5.182 8 C -0.034 4.034 9 C -0.173 4.173 10 C -0.041 4.041 11 C 0.336 3.664 12 O -0.379 6.379 13 N -0.361 5.361 14 C 0.060 3.940 15 H 0.109 0.891 16 C -0.182 4.182 17 C 0.022 3.978 18 N -0.327 5.327 19 C -0.390 4.390 20 H 0.106 0.894 21 C -0.176 4.176 22 N -0.548 5.548 23 Si 0.712 3.288 24 H -0.217 1.217 25 H -0.230 1.230 26 H -0.194 1.194 27 C -0.025 4.025 28 C 0.019 3.981 29 H 0.082 0.918 30 O -0.375 6.375 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.240 0.760 35 H 0.190 0.810 36 H 0.167 0.833 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -28.971 3.200 2.539 29.258 hybrid contribution 0.572 -0.909 1.197 1.608 sum -28.399 2.291 3.736 28.735 Atomic orbital electron populations 1.22021 0.75205 1.04931 1.03760 1.45131 1.07734 1.04572 1.60544 1.25751 0.84806 0.93265 0.97649 1.70377 1.17358 1.10583 1.19426 1.19213 0.91905 0.91375 1.04627 1.18923 0.88951 0.88057 1.04596 1.66157 1.38146 0.99464 1.14462 1.22495 0.87074 0.98448 0.95390 1.22217 0.98888 0.94683 1.01548 1.19766 0.92809 0.92006 0.99488 1.17914 0.84108 0.86441 0.77927 1.90850 1.84160 1.15447 1.47411 1.45947 1.06085 1.09434 1.74636 1.20976 0.78173 0.97784 0.97092 0.89130 1.22430 0.98958 1.01936 0.94841 1.20966 0.88129 0.91358 0.97368 1.44338 1.26981 1.47927 1.13447 1.18938 0.90996 1.35818 0.93217 0.89352 1.25306 0.96015 0.98396 0.97871 1.69835 1.15807 1.31701 1.37454 0.86989 0.76046 0.80148 0.85655 1.21743 1.22958 1.19406 1.22032 0.92893 0.98963 0.88645 1.22792 0.95242 0.97228 0.82844 0.91841 1.86453 1.59552 1.63210 1.28307 0.90544 0.89124 0.89257 0.75972 0.81027 0.83311 0.76880 0.91238 0.91463 0.91116 0.95270 0.92674 0.90318 0.94546 0.77614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.20 59.85 0.67 1.02 16 2 N -0.49 -4.35 3.20 -124.98 -0.40 -4.75 16 3 C 0.27 2.51 12.50 -89.69 -1.12 1.39 16 4 N -0.46 -6.71 10.63 -11.88 -0.13 -6.83 16 5 C 0.05 0.77 6.85 -84.61 -0.58 0.19 16 6 C 0.23 2.80 8.02 -155.65 -1.25 1.55 16 7 N -0.47 -5.20 10.35 -12.30 -0.13 -5.33 16 8 C 0.13 1.17 11.14 -17.56 -0.20 0.98 16 9 C -0.15 -1.47 9.60 -39.02 -0.37 -1.85 16 10 C -0.03 -0.39 5.93 -104.45 -0.62 -1.01 16 11 C 0.55 9.04 7.75 -12.36 -0.10 8.95 16 12 O -0.50 -10.23 15.85 5.31 0.08 -10.15 16 13 N -0.71 -10.40 4.88 -54.74 -0.27 -10.66 16 14 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 15 H 0.09 1.78 7.57 -51.93 -0.39 1.39 16 16 C -0.14 -2.44 5.65 -26.62 -0.15 -2.59 16 17 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 18 N -0.60 -13.97 2.77 -172.32 -0.48 -14.45 16 19 C -0.26 -7.10 10.04 -15.06 -0.15 -7.26 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 21 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 22 N -0.91 -27.08 13.97 55.49 0.78 -26.31 16 23 Si 0.88 21.95 24.34 -169.99 -4.14 17.81 16 24 H -0.29 -6.81 6.62 56.52 0.37 -6.43 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.27 -6.73 6.64 56.52 0.38 -6.35 16 27 C 0.10 2.15 3.83 -3.71 -0.01 2.14 16 28 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 O -0.57 -8.92 13.16 -35.23 -0.46 -9.38 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.15 1.02 6.53 -52.48 -0.34 0.68 16 37 H 0.40 4.64 6.74 -40.82 -0.28 4.36 16 38 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 44 H 0.04 0.80 7.08 -51.93 -0.37 0.44 16 45 H 0.38 4.58 9.08 45.56 0.41 4.99 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -38.47 367.94 -8.85 -47.31 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.03 Total: 6.23 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -4.22 Total: 10.96 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.62 Total: -68.32 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.38 Total: -19.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.47 -8.85 -47.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090566176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.296 kcal (2) G-P(sol) polarization free energy of solvation -38.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds