Wall clock time and date at job start Wed Apr 1 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35986 * 126.36012 * 2 1 4 4 N 1.30276 * 110.05904 * 179.97438 * 3 2 1 5 5 C 1.34659 * 109.66785 * 359.97438 * 4 3 2 6 6 C 1.37937 * 126.35411 * 179.97438 * 2 1 3 7 7 N 1.32115 * 133.81206 * 0.06460 * 6 2 1 8 8 C 1.31724 * 121.95045 * 179.97438 * 7 6 2 9 9 C 1.38343 * 121.54629 * 359.71483 * 8 7 6 10 10 C 1.39633 * 119.37378 * 0.55918 * 9 8 7 11 11 C 1.47761 * 121.07486 * 179.72511 * 10 9 8 12 12 O 1.21562 * 120.00324 * 179.72349 * 11 10 9 13 13 N 1.34783 * 119.99996 * 359.73046 * 11 10 9 14 14 C 1.46501 * 120.00125 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.44605 * 34.96564 * 14 13 11 16 16 C 1.53031 * 109.46140 * 274.99689 * 14 13 11 17 17 C 1.53187 * 109.31453 * 178.61416 * 16 14 13 18 18 N 1.46927 * 108.77692 * 54.63581 * 17 16 14 19 19 C 1.36935 * 120.63348 * 126.36646 * 18 17 16 20 20 H 1.08002 * 120.00059 * 332.63602 * 19 18 17 21 21 C 1.38814 * 119.99735 * 152.62901 * 19 18 17 22 22 N 1.31623 * 119.99528 * 159.37484 * 21 19 18 23 23 Si 1.86791 * 120.00184 * 339.37447 * 21 19 18 24 24 H 1.48496 * 109.47163 * 92.93311 * 23 21 19 25 25 H 1.48501 * 109.47160 * 212.93133 * 23 21 19 26 26 H 1.48496 * 109.47536 * 332.92809 * 23 21 19 27 27 C 1.46928 * 118.73577 * 306.39553 * 18 17 16 28 28 C 1.53043 * 109.45734 * 154.92897 * 14 13 11 29 29 H 1.08992 * 109.52386 * 61.42055 * 28 14 13 30 30 O 1.42902 * 109.49734 * 301.33517 * 28 14 13 31 31 H 1.08995 * 109.47857 * 270.04918 * 1 2 3 32 32 H 1.09006 * 109.47120 * 30.04720 * 1 2 3 33 33 H 1.08996 * 109.47365 * 150.04071 * 1 2 3 34 34 H 1.08005 * 124.96816 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.22721 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.31183 * 180.29328 * 9 8 7 37 37 H 0.97006 * 119.99672 * 359.97438 * 13 11 10 38 38 H 1.09008 * 109.49730 * 58.66431 * 16 14 13 39 39 H 1.09007 * 109.49985 * 298.56886 * 16 14 13 40 40 H 1.09002 * 109.59098 * 174.42156 * 17 16 14 41 41 H 1.09001 * 109.58978 * 294.70988 * 17 16 14 42 42 H 0.97001 * 119.99503 * 180.02562 * 22 21 19 43 43 H 1.09006 * 109.58532 * 173.39516 * 27 18 17 44 44 H 1.09003 * 109.58559 * 293.81573 * 27 18 17 45 45 H 0.96703 * 113.99874 * 180.16061 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0951 0.0000 4 7 3.5216 0.7294 0.0005 5 6 3.6007 -0.6148 0.0015 6 6 2.2826 -1.1109 0.0005 7 7 2.0570 -2.4126 0.0000 8 6 3.0392 -3.2904 0.0002 9 6 4.3645 -2.8935 -0.0049 10 6 4.6716 -1.5314 0.0014 11 6 6.0740 -1.0658 0.0023 12 8 6.3191 0.1249 0.0028 13 7 7.0814 -1.9612 0.0025 14 6 8.4717 -1.4995 0.0028 15 1 8.5506 -0.5858 0.5919 16 6 8.9163 -1.2195 -1.4345 17 6 10.3589 -0.7042 -1.4273 18 7 11.2030 -1.6711 -0.7122 19 6 12.3294 -2.1823 -1.2994 20 1 12.3919 -2.2554 -2.3751 21 6 13.3910 -2.6065 -0.5120 22 7 14.2777 -3.4477 -1.0006 23 14 13.5613 -1.9835 1.2407 24 1 12.8976 -2.9326 2.1701 25 1 15.0006 -1.8740 1.5895 26 1 12.9213 -0.6485 1.3560 27 6 10.8150 -2.0795 0.6448 28 6 9.3673 -2.5794 0.6144 29 1 9.3080 -3.4859 0.0121 30 8 8.9322 -2.8621 1.9459 31 1 -0.3634 0.0009 1.0276 32 1 -0.3634 0.8896 -0.5146 33 1 -0.3634 -0.8903 -0.5132 34 1 1.9254 2.1183 -0.0004 35 1 2.8044 -4.3446 -0.0006 36 1 5.1541 -3.6304 -0.0094 37 1 6.8857 -2.9113 0.0024 38 1 8.2635 -0.4671 -1.8772 39 1 8.8612 -2.1385 -2.0180 40 1 10.7139 -0.5972 -2.4523 41 1 10.3994 0.2618 -0.9239 42 1 15.0193 -3.7444 -0.4502 43 1 11.4709 -2.8800 0.9871 44 1 10.8931 -1.2268 1.3194 45 1 9.4577 -3.5375 2.3963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090566176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:01 Heat of formation + Delta-G solvation = 17.391411 kcal Electronic energy + Delta-G solvation = -30190.892466 eV Core-core repulsion = 26016.570969 eV Total energy + Delta-G solvation = -4174.321497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.45756 -41.21221 -39.76432 -39.06324 -37.03717 -35.92458 -35.48539 -34.22777 -33.19227 -31.63261 -30.81632 -30.64773 -28.05495 -27.23151 -25.71168 -24.61818 -24.00014 -23.57147 -22.70229 -21.45971 -20.98899 -19.26337 -18.84671 -18.54301 -18.29675 -18.26376 -17.55145 -17.20063 -16.68132 -16.24738 -16.13773 -15.94486 -15.64661 -15.25984 -15.12540 -15.06159 -14.85579 -14.63845 -14.44092 -14.18645 -13.98709 -13.74014 -13.67892 -13.45215 -13.39015 -13.07978 -12.71314 -12.50548 -12.36780 -12.03440 -11.86322 -11.75569 -11.72876 -11.45031 -11.25146 -11.09965 -10.70007 -10.24212 -10.16042 -9.77162 -9.59782 -9.02590 -8.18535 -5.52326 -0.70015 0.09204 1.25592 1.35110 1.42274 1.50234 1.67450 1.90491 1.95289 2.37994 2.80684 2.88237 3.05739 3.13146 3.31872 3.33030 3.51839 3.62550 3.76794 3.91273 3.98979 4.06259 4.06564 4.20549 4.25175 4.33763 4.38263 4.43507 4.56195 4.67818 4.71830 4.75603 4.78148 4.86732 4.88555 4.91780 5.00035 5.07949 5.28537 5.39573 5.52111 5.82144 5.94395 6.10986 6.48897 6.72551 6.73304 6.75577 6.87645 7.17633 7.55791 7.95959 9.00681 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.002433 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.510689 B =11505.420115 C =11810.243246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.482 5.482 3 C 0.286 3.714 4 N -0.527 5.527 5 C 0.020 3.980 6 C 0.213 3.787 7 N -0.473 5.473 8 C 0.134 3.866 9 C -0.130 4.130 10 C -0.065 4.065 11 C 0.551 3.449 12 O -0.554 6.554 13 N -0.695 5.695 14 C 0.169 3.831 15 H 0.064 0.936 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.613 5.613 19 C -0.249 4.249 20 H 0.061 0.939 21 C -0.028 4.028 22 N -0.950 5.950 23 Si 0.939 3.061 24 H -0.264 1.264 25 H -0.311 1.311 26 H -0.273 1.273 27 C 0.097 3.903 28 C 0.099 3.901 29 H 0.078 0.922 30 O -0.570 6.570 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.270 0.730 35 H 0.217 0.783 36 H 0.180 0.820 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.842 0.562 3.710 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.174 5.174 3 C 0.001 3.999 4 N -0.245 5.245 5 C -0.104 4.104 6 C -0.023 4.023 7 N -0.187 5.187 8 C -0.032 4.032 9 C -0.152 4.152 10 C -0.078 4.078 11 C 0.338 3.662 12 O -0.432 6.432 13 N -0.347 5.347 14 C 0.064 3.936 15 H 0.082 0.918 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.339 5.339 19 C -0.379 4.379 20 H 0.078 0.922 21 C -0.224 4.224 22 N -0.595 5.595 23 Si 0.768 3.232 24 H -0.191 1.191 25 H -0.240 1.240 26 H -0.198 1.198 27 C -0.029 4.029 28 C 0.038 3.962 29 H 0.095 0.905 30 O -0.377 6.377 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.285 0.715 35 H 0.234 0.766 36 H 0.197 0.803 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -32.329 2.110 3.592 32.596 hybrid contribution 1.457 -0.557 0.834 1.769 sum -30.872 1.552 4.426 31.226 Atomic orbital electron populations 1.22363 0.72386 1.06503 1.05046 1.45468 1.09245 1.03495 1.59155 1.26619 0.83706 0.94915 0.94652 1.70303 1.20350 1.11272 1.22586 1.19590 0.93285 0.91855 1.05693 1.19188 0.88836 0.88970 1.05335 1.66295 1.38884 0.99182 1.14289 1.23281 0.86276 1.00031 0.93613 1.22593 1.00394 0.93392 0.98864 1.19746 0.91073 0.93859 1.03133 1.18357 0.85342 0.85862 0.76600 1.90812 1.85019 1.17540 1.49806 1.45683 1.04717 1.10203 1.74123 1.20696 0.79676 0.96841 0.96350 0.91826 1.22227 0.96871 1.02224 0.95309 1.21069 0.89245 0.90820 0.96941 1.44415 1.26405 1.48763 1.14275 1.18869 0.92291 1.34448 0.92251 0.92173 1.25840 0.96031 0.98888 1.01599 1.69944 1.16879 1.33580 1.39140 0.86049 0.75373 0.79735 0.82064 1.19055 1.23952 1.19808 1.22062 0.95323 0.98348 0.87169 1.22392 0.92452 0.97342 0.84055 0.90465 1.86442 1.59670 1.64106 1.27444 0.89344 0.85755 0.89535 0.71491 0.76626 0.80264 0.74895 0.91047 0.90520 0.91212 0.95407 0.92771 0.91349 0.95284 0.75521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.20 127.77 1.43 1.86 16 2 N -0.48 -7.76 3.20 -549.34 -1.76 -9.52 16 3 C 0.29 4.95 12.50 180.02 2.25 7.20 16 4 N -0.53 -15.58 10.63 -191.51 -2.04 -17.61 16 5 C 0.02 0.57 6.85 40.01 0.27 0.85 16 6 C 0.21 4.93 8.02 133.93 1.07 6.00 16 7 N -0.47 -9.45 10.35 -192.83 -2.00 -11.45 16 8 C 0.13 1.95 11.14 84.73 0.94 2.90 16 9 C -0.13 -2.22 9.60 22.63 0.22 -2.00 16 10 C -0.07 -1.78 5.93 -19.75 -0.12 -1.90 16 11 C 0.55 18.12 7.75 86.76 0.67 18.79 16 12 O -0.55 -23.28 15.85 -3.91 -0.06 -23.34 16 13 N -0.70 -19.43 4.88 -445.36 -2.17 -21.60 16 14 C 0.17 5.67 2.12 45.02 0.10 5.76 16 15 H 0.06 2.52 7.57 -2.39 -0.02 2.50 16 16 C -0.13 -4.28 5.65 30.67 0.17 -4.11 16 17 C 0.14 5.78 6.52 86.36 0.56 6.34 16 18 N -0.61 -28.35 2.77 -699.08 -1.94 -30.29 16 19 C -0.25 -13.72 10.04 84.03 0.84 -12.88 16 20 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 21 C -0.03 -1.60 5.23 84.86 0.44 -1.15 16 22 N -0.95 -57.87 13.97 21.65 0.30 -57.57 16 23 Si 0.94 45.54 24.34 68.60 1.67 47.21 16 24 H -0.26 -11.62 6.62 99.48 0.66 -10.96 16 25 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 26 H -0.27 -13.27 6.64 99.48 0.66 -12.61 16 27 C 0.10 4.00 3.83 86.36 0.33 4.33 16 28 C 0.10 3.23 3.14 30.67 0.10 3.32 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 O -0.57 -16.25 13.16 -148.98 -1.96 -18.21 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.27 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.18 1.75 6.53 -2.91 -0.02 1.73 16 37 H 0.41 8.55 6.74 -92.70 -0.63 7.92 16 38 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.07 2.96 4.50 -2.38 -0.01 2.95 16 44 H 0.03 1.25 7.08 -2.39 -0.02 1.24 16 45 H 0.39 8.28 9.08 -74.06 -0.67 7.61 16 Total: -1.00 -88.26 367.94 -0.99 -89.25 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.33 Total: 17.84 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 9.29 Total: 35.31 kcal Atomic # 7 Polarization: -138.45 SS G_CDS: -9.60 Total: -148.05 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.02 Total: -41.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -88.26 -0.99 -89.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090566176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.637 kcal (2) G-P(sol) polarization free energy of solvation -88.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds