Wall clock time and date at job start Wed Apr 1 2020 03:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39802 * 125.33826 * 2 1 4 4 C 1.30201 * 110.12713 * 180.02562 * 3 2 1 5 5 C 1.45967 * 107.59084 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.12314 * 180.02562 * 5 4 3 7 7 C 1.39504 * 117.95226 * 179.97438 * 6 5 4 8 8 C 1.47680 * 120.41173 * 179.97438 * 7 6 5 9 9 O 1.21575 * 120.00355 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00361 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46396 * 35.02695 * 11 10 8 13 13 C 1.53044 * 109.46189 * 275.06459 * 11 10 8 14 14 C 1.52755 * 109.38132 * 301.22024 * 13 11 10 15 15 N 1.46923 * 109.00900 * 305.58408 * 14 13 11 16 16 C 1.36943 * 120.62930 * 233.58508 * 15 14 13 17 17 H 1.08000 * 119.99888 * 152.17192 * 16 15 14 18 18 C 1.38811 * 119.99955 * 332.17173 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46669 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46948 * 299.99298 * 20 18 16 23 23 H 1.48498 * 109.47140 * 59.99949 * 20 18 16 24 24 C 1.46927 * 118.73893 * 53.31139 * 15 14 13 25 25 C 1.53046 * 109.46379 * 154.99790 * 11 10 8 26 26 H 1.08999 * 109.49861 * 178.60651 * 25 11 10 27 27 O 1.42898 * 109.49343 * 298.70602 * 25 11 10 28 28 C 1.40189 * 119.17978 * 0.26854 * 7 6 5 29 29 N 1.31188 * 121.37515 * 359.43781 * 28 7 6 30 30 C 1.32934 * 121.84119 * 0.56552 * 29 28 7 31 31 H 1.08996 * 109.47279 * 90.02532 * 1 2 3 32 32 H 1.09003 * 109.46759 * 210.02860 * 1 2 3 33 33 H 1.08999 * 109.47130 * 330.02175 * 1 2 3 34 34 H 1.08001 * 126.20586 * 179.97438 * 4 3 2 35 35 H 1.08005 * 121.02548 * 359.92899 * 6 5 4 36 36 H 0.97006 * 119.99741 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.49256 * 61.29397 * 13 11 10 38 38 H 1.09002 * 109.49531 * 181.39096 * 13 11 10 39 39 H 1.09005 * 109.50719 * 185.70148 * 14 13 11 40 40 H 1.09006 * 109.43430 * 65.42411 * 14 13 11 41 41 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.58525 * 66.43417 * 24 15 14 43 43 H 1.08995 * 109.58430 * 186.71314 * 24 15 14 44 44 H 0.96702 * 113.99942 * 179.83960 * 27 25 11 45 45 H 1.07999 * 119.31246 * 179.70014 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0003 6 6 4.6327 -1.5894 -0.0002 7 6 4.3001 -2.9442 0.0006 8 6 5.3588 -3.9739 0.0001 9 8 6.5286 -3.6430 -0.0004 10 7 5.0282 -5.2805 0.0004 11 6 6.0784 -6.3018 0.0005 12 1 6.9255 -5.9517 0.5903 13 6 6.5327 -6.5663 -1.4368 14 6 5.3378 -7.0271 -2.2695 15 7 4.7132 -8.1828 -1.6115 16 6 4.5059 -9.3490 -2.2987 17 1 4.4835 -10.2906 -1.7701 18 6 4.3246 -9.3210 -3.6746 19 7 4.0138 -8.1916 -4.2746 20 14 4.5216 -10.8864 -4.6746 21 1 4.2768 -10.5913 -6.1093 22 1 5.9002 -11.4118 -4.5052 23 1 3.5440 -11.9005 -4.2045 24 6 4.3209 -8.0655 -0.2004 25 6 5.5322 -7.5948 0.6106 26 1 6.3055 -8.3626 0.5884 27 8 5.1366 -7.3542 1.9625 28 6 2.9485 -3.3163 -0.0046 29 7 1.9927 -2.4176 0.0010 30 6 2.2553 -1.1145 0.0005 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 -0.0011 35 1 5.6642 -1.2695 -0.0015 36 1 4.0948 -5.5446 0.0012 37 1 6.9431 -5.6507 -1.8628 38 1 7.2966 -7.3438 -1.4396 39 1 5.6767 -7.3127 -3.2654 40 1 4.6145 -6.2153 -2.3462 41 1 3.8867 -8.1720 -5.2360 42 1 3.5129 -7.3401 -0.1050 43 1 3.9865 -9.0354 0.1677 44 1 4.7776 -8.1318 2.4116 45 1 2.6886 -4.3645 -0.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090680601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:22 Heat of formation + Delta-G solvation = 51.516013 kcal Electronic energy + Delta-G solvation = -30388.405308 eV Core-core repulsion = 26215.563565 eV Total energy + Delta-G solvation = -4172.841743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80219 -39.99042 -38.41581 -37.49159 -35.46876 -34.20182 -33.98991 -32.11098 -31.69379 -30.73544 -29.82340 -28.58506 -27.11448 -25.42882 -24.16377 -23.88622 -22.33194 -21.90358 -21.16237 -20.86867 -18.83479 -18.12330 -17.90608 -17.17960 -16.70807 -16.37505 -16.09856 -15.79562 -15.15848 -14.94393 -14.70849 -14.43320 -14.35611 -13.94555 -13.81530 -13.66487 -13.50161 -13.27748 -13.17710 -12.80808 -12.70062 -12.49825 -12.29432 -12.03074 -11.69596 -11.38679 -11.20536 -10.89853 -10.70009 -10.67169 -10.43686 -10.23577 -10.09938 -9.97144 -9.82599 -9.47464 -9.45449 -9.28784 -8.74171 -8.54428 -8.44728 -6.80545 -5.89017 -3.33312 0.55033 0.70076 1.86118 2.16962 2.96176 3.32587 3.35926 3.39592 3.39968 3.78490 3.87141 4.02344 4.33359 4.34571 4.49301 4.65671 4.69261 4.90392 4.97205 5.07048 5.17281 5.22808 5.25347 5.27967 5.37053 5.43605 5.55198 5.67236 5.85304 5.93765 5.94839 6.03307 6.18726 6.22460 6.41751 6.49423 6.52076 6.61077 6.66669 6.88553 7.12786 7.25043 7.56494 7.63100 7.69307 7.79211 7.89056 8.33246 8.45278 9.08976 9.71348 10.26204 11.19054 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002846 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.525858 B = 9836.726127 C =10713.538170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.394 5.394 3 N -0.243 5.243 4 C 0.096 3.904 5 C -0.240 4.240 6 C 0.071 3.929 7 C -0.225 4.225 8 C 0.571 3.429 9 O -0.547 6.547 10 N -0.699 5.699 11 C 0.167 3.833 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.171 3.829 15 N -0.586 5.586 16 C -0.261 4.261 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.290 1.290 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.068 0.932 27 O -0.571 6.571 28 C 0.210 3.790 29 N -0.504 5.504 30 C 0.328 3.672 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.205 0.795 35 H 0.155 0.845 36 H 0.400 0.600 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.021 0.979 41 H 0.256 0.744 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.374 0.626 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 13.302 10.415 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.184 5.184 3 N -0.055 5.055 4 C -0.103 4.103 5 C -0.250 4.250 6 C 0.042 3.958 7 C -0.232 4.232 8 C 0.357 3.643 9 O -0.427 6.427 10 N -0.349 5.349 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.194 4.194 14 C 0.045 3.955 15 N -0.311 5.311 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.541 5.541 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.086 0.914 27 O -0.375 6.375 28 C 0.040 3.960 29 N -0.218 5.218 30 C 0.089 3.911 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.222 0.778 35 H 0.172 0.828 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.221 0.779 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.504 14.954 10.084 18.374 hybrid contribution 0.628 -1.946 -0.570 2.123 sum -2.876 13.008 9.515 16.371 Atomic orbital electron populations 1.21848 0.73215 1.04487 1.03468 1.48097 1.06407 1.00028 1.63903 1.76715 1.02736 1.07449 1.18602 1.25118 0.94862 0.92560 0.97752 1.20455 0.94059 0.94767 1.15738 1.21150 0.99259 0.89974 0.85438 1.20730 0.95019 0.94636 1.12835 1.17717 0.87825 0.82332 0.76444 1.90745 1.19076 1.81619 1.51218 1.45833 1.10764 1.04908 1.73438 1.20866 0.89950 0.85791 0.97133 0.90070 1.22530 1.01261 1.01068 0.94525 1.20712 0.90204 0.88265 0.96278 1.43987 1.68694 1.12633 1.05737 1.19102 1.44831 0.85066 0.90032 0.91621 1.25040 0.99395 0.96897 0.97890 1.70014 1.49191 1.25435 1.09498 0.86356 0.78226 0.82864 0.79213 1.21587 1.20933 1.20858 1.21538 0.93280 0.98931 0.87181 1.22757 0.98474 0.96191 0.81189 0.91446 1.86483 1.85243 1.39898 1.25882 1.22929 0.86917 0.98392 0.87780 1.66696 1.37366 0.98420 1.19344 1.19146 0.88663 0.88211 0.95085 0.90927 0.89004 0.89403 0.77843 0.82768 0.76290 0.91688 0.91391 0.89209 0.96065 0.93423 0.96097 0.92180 0.77938 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.91 11.43 59.85 0.68 1.59 16 2 N -0.39 -4.69 4.03 -67.17 -0.27 -4.96 16 3 N -0.24 -2.77 12.39 31.87 0.39 -2.38 16 4 C 0.10 0.94 12.30 -15.15 -0.19 0.75 16 5 C -0.24 -2.93 6.36 -105.20 -0.67 -3.60 16 6 C 0.07 0.88 9.76 -38.58 -0.38 0.51 16 7 C -0.22 -3.14 5.89 -104.84 -0.62 -3.76 16 8 C 0.57 9.27 7.74 -12.40 -0.10 9.18 16 9 O -0.55 -10.25 16.06 5.30 0.09 -10.16 16 10 N -0.70 -11.18 4.11 -54.76 -0.23 -11.40 16 11 C 0.17 2.85 2.47 -67.89 -0.17 2.68 16 12 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 13 C -0.15 -2.89 5.75 -26.83 -0.15 -3.04 16 14 C 0.17 3.82 5.03 -3.94 -0.02 3.80 16 15 N -0.59 -13.39 3.00 -172.58 -0.52 -13.91 16 16 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 17 H 0.07 1.64 7.89 -52.49 -0.41 1.23 16 18 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 19 N -0.90 -24.90 11.19 55.49 0.62 -24.28 16 20 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 2.17 5.85 -3.71 -0.02 2.15 16 25 C 0.07 1.20 3.36 -26.61 -0.09 1.11 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 O -0.57 -8.03 13.21 -35.23 -0.47 -8.49 16 28 C 0.21 2.82 10.69 -17.09 -0.18 2.63 16 29 N -0.50 -7.05 10.37 -12.03 -0.12 -7.17 16 30 C 0.33 4.42 7.96 -156.09 -1.24 3.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.69 7.72 -52.48 -0.41 1.29 16 36 H 0.40 6.05 4.90 -40.82 -0.20 5.85 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 40 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.02 0.38 6.64 -51.93 -0.34 0.04 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.37 3.71 9.08 45.56 0.41 4.12 16 45 H 0.17 1.99 6.39 -52.49 -0.34 1.66 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -33.14 371.47 -8.20 -41.35 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.90 Total: 9.58 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -3.37 Total: 10.45 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.12 Total: -64.11 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.38 Total: -18.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.14 -8.20 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090680601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.863 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds