Wall clock time and date at job start Wed Apr 1 2020 03:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39802 * 125.33826 * 2 1 4 4 C 1.30201 * 110.12713 * 180.02562 * 3 2 1 5 5 C 1.45967 * 107.59084 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.12314 * 180.02562 * 5 4 3 7 7 C 1.39504 * 117.95226 * 179.97438 * 6 5 4 8 8 C 1.47680 * 120.41173 * 179.97438 * 7 6 5 9 9 O 1.21575 * 120.00355 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00361 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46396 * 35.02695 * 11 10 8 13 13 C 1.53044 * 109.46189 * 275.06459 * 11 10 8 14 14 C 1.52755 * 109.38132 * 301.22024 * 13 11 10 15 15 N 1.46923 * 109.00900 * 305.58408 * 14 13 11 16 16 C 1.36943 * 120.62930 * 233.58508 * 15 14 13 17 17 H 1.08000 * 119.99888 * 152.17192 * 16 15 14 18 18 C 1.38811 * 119.99955 * 332.17173 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46669 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46948 * 299.99298 * 20 18 16 23 23 H 1.48498 * 109.47140 * 59.99949 * 20 18 16 24 24 C 1.46927 * 118.73893 * 53.31139 * 15 14 13 25 25 C 1.53046 * 109.46379 * 154.99790 * 11 10 8 26 26 H 1.08999 * 109.49861 * 178.60651 * 25 11 10 27 27 O 1.42898 * 109.49343 * 298.70602 * 25 11 10 28 28 C 1.40189 * 119.17978 * 0.26854 * 7 6 5 29 29 N 1.31188 * 121.37515 * 359.43781 * 28 7 6 30 30 C 1.32934 * 121.84119 * 0.56552 * 29 28 7 31 31 H 1.08996 * 109.47279 * 90.02532 * 1 2 3 32 32 H 1.09003 * 109.46759 * 210.02860 * 1 2 3 33 33 H 1.08999 * 109.47130 * 330.02175 * 1 2 3 34 34 H 1.08001 * 126.20586 * 179.97438 * 4 3 2 35 35 H 1.08005 * 121.02548 * 359.92899 * 6 5 4 36 36 H 0.97006 * 119.99741 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.49256 * 61.29397 * 13 11 10 38 38 H 1.09002 * 109.49531 * 181.39096 * 13 11 10 39 39 H 1.09005 * 109.50719 * 185.70148 * 14 13 11 40 40 H 1.09006 * 109.43430 * 65.42411 * 14 13 11 41 41 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.58525 * 66.43417 * 24 15 14 43 43 H 1.08995 * 109.58430 * 186.71314 * 24 15 14 44 44 H 0.96702 * 113.99942 * 179.83960 * 27 25 11 45 45 H 1.07999 * 119.31246 * 179.70014 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0003 6 6 4.6327 -1.5894 -0.0002 7 6 4.3001 -2.9442 0.0006 8 6 5.3588 -3.9739 0.0001 9 8 6.5286 -3.6430 -0.0004 10 7 5.0282 -5.2805 0.0004 11 6 6.0784 -6.3018 0.0005 12 1 6.9255 -5.9517 0.5903 13 6 6.5327 -6.5663 -1.4368 14 6 5.3378 -7.0271 -2.2695 15 7 4.7132 -8.1828 -1.6115 16 6 4.5059 -9.3490 -2.2987 17 1 4.4835 -10.2906 -1.7701 18 6 4.3246 -9.3210 -3.6746 19 7 4.0138 -8.1916 -4.2746 20 14 4.5216 -10.8864 -4.6746 21 1 4.2768 -10.5913 -6.1093 22 1 5.9002 -11.4118 -4.5052 23 1 3.5440 -11.9005 -4.2045 24 6 4.3209 -8.0655 -0.2004 25 6 5.5322 -7.5948 0.6106 26 1 6.3055 -8.3626 0.5884 27 8 5.1366 -7.3542 1.9625 28 6 2.9485 -3.3163 -0.0046 29 7 1.9927 -2.4176 0.0010 30 6 2.2553 -1.1145 0.0005 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 -0.0011 35 1 5.6642 -1.2695 -0.0015 36 1 4.0948 -5.5446 0.0012 37 1 6.9431 -5.6507 -1.8628 38 1 7.2966 -7.3438 -1.4396 39 1 5.6767 -7.3127 -3.2654 40 1 4.6145 -6.2153 -2.3462 41 1 3.8867 -8.1720 -5.2360 42 1 3.5129 -7.3401 -0.1050 43 1 3.9865 -9.0354 0.1677 44 1 4.7776 -8.1318 2.4116 45 1 2.6886 -4.3645 -0.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090680601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:21 Heat of formation + Delta-G solvation = 27.370454 kcal Electronic energy + Delta-G solvation = -30389.452338 eV Core-core repulsion = 26215.563565 eV Total energy + Delta-G solvation = -4173.888773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.72633 -41.27923 -39.63699 -38.67189 -36.90413 -35.63555 -34.91701 -33.63772 -32.82539 -32.10102 -31.11293 -30.05525 -27.95550 -27.15290 -25.18798 -24.96126 -23.84828 -23.54392 -22.09624 -21.99097 -20.32924 -19.30052 -18.84317 -18.71993 -17.94461 -17.63359 -16.99986 -16.94220 -16.75711 -16.37223 -16.03016 -15.83928 -15.50229 -15.29834 -15.00964 -14.87805 -14.63085 -14.44499 -14.25980 -14.17249 -13.79859 -13.50970 -13.45101 -13.32995 -13.21176 -12.98548 -12.69139 -12.32289 -12.26996 -12.20443 -11.96852 -11.81074 -11.62032 -11.36425 -11.15581 -10.97685 -10.59210 -10.47519 -10.24128 -10.05334 -9.42722 -8.67730 -7.86571 -5.32009 -0.38064 -0.34136 1.04394 1.33874 1.49498 1.52298 1.57966 1.79362 2.12770 2.51721 2.70330 2.97903 3.16000 3.20230 3.29995 3.48045 3.63067 3.69153 3.71971 3.90959 3.98588 4.10592 4.22191 4.30201 4.36476 4.39435 4.42954 4.46518 4.57992 4.63702 4.71932 4.85335 4.92596 5.01086 5.07757 5.10194 5.17441 5.32375 5.45618 5.52470 5.62531 5.65957 5.74321 6.25918 6.38036 6.51356 6.66983 6.92929 7.15092 7.18183 7.84531 8.34925 9.19237 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.002846 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.525858 B = 9836.726127 C =10713.538170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.259 5.259 4 C 0.112 3.888 5 C -0.250 4.250 6 C 0.080 3.920 7 C -0.241 4.241 8 C 0.572 3.428 9 O -0.575 6.575 10 N -0.697 5.697 11 C 0.169 3.831 12 H 0.080 0.920 13 C -0.140 4.140 14 C 0.184 3.816 15 N -0.601 5.601 16 C -0.263 4.263 17 H 0.072 0.928 18 C -0.046 4.046 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.299 1.299 22 H -0.279 1.279 23 H -0.275 1.275 24 C 0.117 3.883 25 C 0.095 3.905 26 H 0.072 0.928 27 O -0.570 6.570 28 C 0.209 3.791 29 N -0.519 5.519 30 C 0.309 3.691 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.169 0.831 36 H 0.404 0.596 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.004 0.996 41 H 0.248 0.752 42 H 0.026 0.974 43 H 0.069 0.931 44 H 0.395 0.605 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 13.815 11.900 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.190 5.190 3 N -0.071 5.071 4 C -0.086 4.086 5 C -0.260 4.260 6 C 0.051 3.949 7 C -0.249 4.249 8 C 0.360 3.640 9 O -0.457 6.457 10 N -0.347 5.347 11 C 0.065 3.935 12 H 0.099 0.901 13 C -0.180 4.180 14 C 0.058 3.942 15 N -0.326 5.326 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.226 1.226 22 H -0.205 1.205 23 H -0.201 1.201 24 C -0.009 4.009 25 C 0.034 3.966 26 H 0.090 0.910 27 O -0.377 6.377 28 C 0.039 3.961 29 N -0.234 5.234 30 C 0.069 3.931 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.264 0.736 35 H 0.187 0.813 36 H 0.242 0.758 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.245 0.755 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.472 15.459 11.620 19.649 hybrid contribution 0.550 -2.031 -0.953 2.310 sum -2.922 13.428 10.667 17.397 Atomic orbital electron populations 1.22086 0.71678 1.05592 1.04285 1.48461 1.07496 0.99652 1.63378 1.76728 1.03385 1.07410 1.19546 1.25833 0.95480 0.91812 0.95472 1.20698 0.93413 0.96078 1.15786 1.21321 1.00105 0.89449 0.83989 1.20571 0.94548 0.94741 1.15023 1.17992 0.87904 0.82573 0.75510 1.90721 1.20271 1.82003 1.52659 1.45791 1.10737 1.04865 1.73319 1.20749 0.90416 0.86688 0.95693 0.90147 1.22326 0.99652 1.00762 0.95309 1.20404 0.90893 0.87644 0.95269 1.44154 1.69168 1.11938 1.07341 1.19461 1.43121 0.86289 0.90428 0.91009 1.25732 1.00106 0.99326 0.99030 1.70166 1.51122 1.27243 1.09033 0.85411 0.78236 0.79938 0.77248 1.22557 1.20533 1.20065 1.21696 0.94495 0.99796 0.84937 1.22348 0.97173 0.95298 0.81794 0.91014 1.86457 1.85329 1.41441 1.24493 1.23037 0.86740 0.98830 0.87515 1.66699 1.37566 0.98953 1.20142 1.19494 0.89889 0.88448 0.95281 0.90235 0.88810 0.87439 0.73611 0.81323 0.75813 0.92086 0.91067 0.92889 0.97833 0.94250 0.95589 0.91211 0.75461 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 11.43 127.77 1.46 3.05 16 2 N -0.40 -9.04 4.03 -366.44 -1.48 -10.52 16 3 N -0.26 -5.40 12.39 -53.08 -0.66 -6.06 16 4 C 0.11 1.91 12.30 86.94 1.07 2.98 16 5 C -0.25 -5.72 6.36 -20.24 -0.13 -5.85 16 6 C 0.08 1.91 9.76 22.92 0.22 2.13 16 7 C -0.24 -6.65 5.89 -20.00 -0.12 -6.77 16 8 C 0.57 18.40 7.74 86.74 0.67 19.07 16 9 O -0.58 -21.31 16.06 -3.95 -0.06 -21.38 16 10 N -0.70 -21.91 4.11 -445.42 -1.83 -23.74 16 11 C 0.17 5.61 2.47 45.02 0.11 5.73 16 12 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 13 C -0.14 -5.28 5.75 30.53 0.18 -5.10 16 14 C 0.18 8.38 5.03 86.22 0.43 8.82 16 15 N -0.60 -27.36 3.00 -699.93 -2.10 -29.46 16 16 C -0.26 -13.41 9.58 84.03 0.81 -12.60 16 17 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 18 C -0.05 -2.45 4.91 84.86 0.42 -2.03 16 19 N -0.93 -52.94 11.19 21.65 0.24 -52.70 16 20 Si 0.96 43.14 29.59 68.60 2.03 45.17 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.12 4.12 5.85 86.36 0.50 4.63 16 25 C 0.09 2.86 3.36 30.67 0.10 2.96 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 O -0.57 -14.44 13.21 -148.98 -1.97 -16.41 16 28 C 0.21 5.57 10.69 85.26 0.91 6.48 16 29 N -0.52 -14.36 10.37 -191.96 -1.99 -16.35 16 30 C 0.31 8.07 7.96 134.17 1.07 9.13 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.25 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 3.44 7.72 -2.91 -0.02 3.42 16 36 H 0.40 12.00 4.90 -92.70 -0.45 11.54 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 2.81 6.04 -2.38 -0.01 2.80 16 40 H 0.00 0.17 7.74 -2.38 -0.02 0.15 16 41 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.03 0.91 6.64 -2.38 -0.02 0.90 16 43 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 44 H 0.40 6.50 9.08 -74.06 -0.67 5.82 16 45 H 0.18 4.18 6.39 -2.91 -0.02 4.16 16 Total: -1.00 -71.55 371.47 -0.18 -71.72 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.07 Total: 27.10 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 7.71 Total: 32.62 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -7.82 Total: -138.83 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -2.03 Total: -37.78 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -71.55 -0.18 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090680601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.094 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds