Wall clock time and date at job start Wed Apr 1 2020 03:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39803 * 125.34142 * 2 1 4 4 C 1.30207 * 110.13278 * 180.02562 * 3 2 1 5 5 C 1.45972 * 107.58448 * 359.97438 * 4 3 2 6 6 C 1.39658 * 134.11998 * 180.02562 * 5 4 3 7 7 C 1.39505 * 117.94923 * 179.97438 * 6 5 4 8 8 C 1.47687 * 120.40743 * 179.97438 * 7 6 5 9 9 O 1.21572 * 120.00212 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00076 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00085 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46487 * 325.02575 * 11 10 8 13 13 C 1.53040 * 109.46117 * 85.00043 * 11 10 8 14 14 C 1.53195 * 109.31222 * 58.65691 * 13 11 10 15 15 N 1.46921 * 108.77723 * 54.63273 * 14 13 11 16 16 C 1.36941 * 120.62821 * 126.36784 * 15 14 13 17 17 H 1.07999 * 119.99935 * 209.25250 * 16 15 14 18 18 C 1.38810 * 120.00128 * 29.25408 * 16 15 14 19 19 N 1.31626 * 119.99774 * 24.28223 * 18 16 15 20 20 Si 1.86795 * 120.00379 * 204.00121 * 18 16 15 21 21 H 1.48494 * 109.47251 * 180.27650 * 20 18 16 22 22 H 1.48503 * 109.47047 * 300.27933 * 20 18 16 23 23 H 1.48497 * 109.46888 * 60.27654 * 20 18 16 24 24 C 1.46917 * 118.74217 * 306.64519 * 15 14 13 25 25 C 1.52767 * 109.00910 * 53.30612 * 24 15 14 26 26 H 1.09002 * 109.38401 * 65.51881 * 25 24 15 27 27 O 1.42898 * 109.56927 * 185.55344 * 25 24 15 28 28 C 1.40185 * 119.18239 * 0.25587 * 7 6 5 29 29 N 1.31181 * 121.37361 * 359.46737 * 28 7 6 30 30 C 1.32934 * 121.84415 * 0.54575 * 29 28 7 31 31 H 1.08994 * 109.47160 * 269.97868 * 1 2 3 32 32 H 1.08998 * 109.46753 * 29.97527 * 1 2 3 33 33 H 1.08996 * 109.47390 * 149.97639 * 1 2 3 34 34 H 1.07993 * 126.20442 * 179.97438 * 4 3 2 35 35 H 1.07999 * 121.02219 * 0.02562 * 6 5 4 36 36 H 0.97003 * 120.00017 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.50061 * 298.70610 * 13 11 10 38 38 H 1.09001 * 109.52781 * 178.62244 * 13 11 10 39 39 H 1.09003 * 109.58528 * 294.84891 * 14 13 11 40 40 H 1.09000 * 109.70568 * 174.49305 * 14 13 11 41 41 H 0.97001 * 119.99921 * 5.49457 * 19 18 16 42 42 H 1.08997 * 109.59120 * 173.14108 * 24 15 14 43 43 H 1.09000 * 109.59125 * 293.57141 * 24 15 14 44 44 H 0.96699 * 113.99740 * 299.96966 * 27 25 24 45 45 H 1.08000 * 119.31011 * 179.72240 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5302 0.7988 -0.0005 5 6 3.5907 -0.6596 -0.0003 6 6 4.6327 -1.5895 -0.0002 7 6 4.3000 -2.9443 0.0006 8 6 5.3588 -3.9740 0.0001 9 8 6.5286 -3.6430 -0.0004 10 7 5.0281 -5.2805 0.0004 11 6 6.0783 -6.3019 0.0005 12 1 6.9258 -5.9515 -0.5886 13 6 6.5316 -6.5670 1.4380 14 6 5.3309 -7.0265 2.2712 15 7 4.7119 -8.1836 1.6106 16 6 4.5041 -9.3502 2.2970 17 1 4.5091 -10.2939 1.7719 18 6 4.2870 -9.3197 3.6677 19 7 3.8111 -8.2313 4.2346 20 14 4.6629 -10.8259 4.7066 21 1 4.3408 -10.5400 6.1277 22 1 3.8433 -11.9705 4.2338 23 1 6.1035 -11.1647 4.5841 24 6 4.3257 -8.0675 0.1978 25 6 5.5325 -7.5945 -0.6107 26 1 6.3060 -8.3622 -0.5888 27 8 5.1381 -7.3533 -1.9628 28 6 2.9485 -3.3163 -0.0043 29 7 1.9928 -2.4177 0.0009 30 6 2.2554 -1.1145 0.0002 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 4.3743 1.4724 -0.0011 35 1 5.6642 -1.2695 0.0001 36 1 4.0948 -5.5446 0.0004 37 1 6.9416 -5.6517 1.8649 38 1 7.2957 -7.3443 1.4417 39 1 4.6054 -6.2163 2.3444 40 1 5.6635 -7.3105 3.2696 41 1 3.5372 -7.4792 3.6867 42 1 3.9976 -9.0387 -0.1724 43 1 3.5166 -7.3439 0.0984 44 1 4.7816 -8.1312 -2.4132 45 1 2.6886 -4.3645 -0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090680602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:25 Heat of formation + Delta-G solvation = 23.668843 kcal Electronic energy + Delta-G solvation = -30445.272738 eV Core-core repulsion = 26271.223451 eV Total energy + Delta-G solvation = -4174.049287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.76196 -41.37621 -39.75390 -38.73814 -37.13219 -35.78388 -34.95013 -33.69296 -32.84523 -32.11634 -31.19791 -30.05923 -27.96737 -27.04597 -25.23657 -25.01209 -24.03348 -23.50376 -22.15222 -22.02513 -20.40771 -19.52543 -19.20334 -18.82312 -18.10575 -17.75764 -17.02488 -16.94910 -16.47026 -16.39283 -16.17340 -15.99602 -15.41158 -15.38948 -15.24985 -15.02729 -14.67822 -14.46446 -14.28525 -14.22443 -13.94916 -13.79755 -13.48204 -13.44219 -13.35538 -12.69811 -12.53898 -12.46713 -12.29456 -12.10705 -11.90055 -11.73655 -11.65507 -11.39823 -11.17792 -11.09043 -10.63337 -10.41421 -10.28243 -10.14130 -9.46529 -8.91910 -8.22703 -5.41553 -0.41514 -0.38456 1.01456 1.31019 1.61223 1.67773 1.73894 1.86062 2.04819 2.65003 2.65869 2.93684 3.07652 3.13740 3.24883 3.44640 3.54703 3.57941 3.66830 3.80994 3.92609 4.01021 4.14581 4.21596 4.27060 4.34224 4.36134 4.39154 4.43335 4.57351 4.61599 4.76209 4.81516 4.91474 4.92980 5.03445 5.05881 5.17890 5.28409 5.30148 5.45678 5.59313 5.86284 6.22916 6.40506 6.43778 6.63317 6.82694 7.05653 7.11151 7.75810 8.19660 9.02498 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.002855 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.342366 B = 9805.062041 C =10675.385353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.259 5.259 4 C 0.113 3.887 5 C -0.249 4.249 6 C 0.081 3.919 7 C -0.242 4.242 8 C 0.573 3.427 9 O -0.573 6.573 10 N -0.698 5.698 11 C 0.170 3.830 12 H 0.084 0.916 13 C -0.135 4.135 14 C 0.164 3.836 15 N -0.608 5.608 16 C -0.355 4.355 17 H 0.056 0.944 18 C -0.071 4.071 19 N -0.941 5.941 20 Si 1.111 2.889 21 H -0.296 1.296 22 H -0.275 1.275 23 H -0.280 1.280 24 C 0.119 3.881 25 C 0.096 3.904 26 H 0.070 0.930 27 O -0.568 6.568 28 C 0.209 3.791 29 N -0.519 5.519 30 C 0.309 3.691 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.170 0.830 36 H 0.404 0.596 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.011 0.989 40 H 0.043 0.957 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.396 0.604 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 13.990 -12.210 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.189 5.189 3 N -0.070 5.070 4 C -0.086 4.086 5 C -0.259 4.259 6 C 0.052 3.948 7 C -0.250 4.250 8 C 0.361 3.639 9 O -0.454 6.454 10 N -0.349 5.349 11 C 0.065 3.935 12 H 0.102 0.898 13 C -0.176 4.176 14 C 0.038 3.962 15 N -0.334 5.334 16 C -0.485 4.485 17 H 0.073 0.927 18 C -0.268 4.268 19 N -0.582 5.582 20 Si 0.936 3.064 21 H -0.223 1.223 22 H -0.201 1.201 23 H -0.207 1.207 24 C -0.007 4.007 25 C 0.035 3.965 26 H 0.088 0.912 27 O -0.376 6.376 28 C 0.038 3.962 29 N -0.233 5.233 30 C 0.069 3.931 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.264 0.736 35 H 0.187 0.813 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.246 0.754 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.785 15.015 -10.547 18.559 hybrid contribution 0.359 -0.742 -1.349 1.581 sum -2.426 14.273 -11.896 18.738 Atomic orbital electron populations 1.22089 0.71658 1.05611 1.04304 1.48473 1.07513 0.99654 1.63299 1.76737 1.03391 1.07387 1.19509 1.25844 0.95485 0.91798 0.95433 1.20701 0.93393 0.96097 1.15745 1.21325 1.00133 0.89422 0.83886 1.20556 0.94498 0.94731 1.15207 1.17998 0.87938 0.82505 0.75448 1.90727 1.20244 1.81962 1.52477 1.45793 1.10655 1.04895 1.73579 1.20724 0.90594 0.86633 0.95510 0.89790 1.22300 0.99010 1.01039 0.95207 1.20705 0.92009 0.88157 0.95327 1.44189 1.69595 1.11928 1.07703 1.20179 1.48654 0.85953 0.93712 0.92665 1.27096 0.97031 1.05187 0.97495 1.70911 1.40552 1.07596 1.39173 0.82893 0.76822 0.72312 0.74325 1.22279 1.20093 1.20662 1.21597 0.94664 0.99629 0.84793 1.22230 0.97029 0.95367 0.81910 0.91186 1.86458 1.85457 1.41351 1.24285 1.23020 0.86749 0.98802 0.87645 1.66690 1.37574 0.98981 1.20104 1.19495 0.89909 0.88434 0.95264 0.90221 0.87404 0.88816 0.73573 0.81266 0.75860 0.91624 0.90829 0.97151 0.93877 0.93455 0.91614 0.95526 0.75433 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 11.43 127.77 1.46 3.02 16 2 N -0.40 -8.90 4.03 -366.45 -1.48 -10.38 16 3 N -0.26 -5.31 12.39 -53.08 -0.66 -5.97 16 4 C 0.11 1.88 12.30 86.94 1.07 2.94 16 5 C -0.25 -5.60 6.36 -20.24 -0.13 -5.73 16 6 C 0.08 1.88 9.76 22.92 0.22 2.11 16 7 C -0.24 -6.51 5.89 -20.00 -0.12 -6.63 16 8 C 0.57 17.97 7.74 86.74 0.67 18.64 16 9 O -0.57 -20.77 16.06 -3.94 -0.06 -20.83 16 10 N -0.70 -21.42 4.11 -445.44 -1.83 -23.25 16 11 C 0.17 5.55 2.47 45.02 0.11 5.66 16 12 H 0.08 2.82 7.57 -2.39 -0.02 2.80 16 13 C -0.14 -4.99 5.77 30.67 0.18 -4.82 16 14 C 0.16 7.32 4.45 86.36 0.38 7.70 16 15 N -0.61 -27.76 2.84 -699.94 -1.99 -29.75 16 16 C -0.36 -18.54 9.48 84.03 0.80 -17.74 16 17 H 0.06 2.85 7.94 -2.91 -0.02 2.83 16 18 C -0.07 -3.86 4.69 84.86 0.40 -3.46 16 19 N -0.94 -55.36 12.46 21.65 0.27 -55.09 16 20 Si 1.11 49.08 29.98 68.60 2.06 51.14 16 21 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.12 4.26 5.82 86.22 0.50 4.76 16 25 C 0.10 2.89 3.34 30.53 0.10 2.99 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 O -0.57 -14.44 13.21 -148.98 -1.97 -16.41 16 28 C 0.21 5.42 10.69 85.26 0.91 6.33 16 29 N -0.52 -14.12 10.37 -191.96 -1.99 -16.11 16 30 C 0.31 7.94 7.96 134.17 1.07 9.01 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.17 3.35 7.72 -2.91 -0.02 3.33 16 36 H 0.40 11.67 4.91 -92.71 -0.46 11.21 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.66 16 39 H 0.01 0.48 7.45 -2.39 -0.02 0.47 16 40 H 0.04 2.24 6.38 -2.39 -0.02 2.23 16 41 H 0.26 15.25 6.70 -92.71 -0.62 14.62 16 42 H 0.07 2.28 7.93 -2.39 -0.02 2.27 16 43 H 0.03 0.93 6.64 -2.39 -0.02 0.92 16 44 H 0.40 6.63 9.08 -74.06 -0.67 5.96 16 45 H 0.18 4.03 6.39 -2.91 -0.02 4.01 16 Total: -1.00 -73.43 370.54 0.06 -73.37 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.08 Total: 28.51 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 7.63 Total: 24.79 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -7.67 Total: -140.55 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -2.03 Total: -37.25 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.06 Total: 51.14 kcal Total: -73.43 0.06 -73.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090680602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.035 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds