Wall clock time and date at job start Wed Apr 1 2020 03:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28817 * 125.94260 * 2 1 4 4 N 1.28638 * 111.79355 * 180.02562 * 3 2 1 5 5 C 1.34748 * 109.29609 * 0.02562 * 4 3 2 6 6 C 1.39912 * 134.59687 * 180.02562 * 5 4 3 7 7 C 1.36159 * 119.97662 * 179.97438 * 6 5 4 8 8 C 1.40257 * 120.55849 * 0.02562 * 7 6 5 9 9 C 1.47717 * 119.87807 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99894 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00561 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00689 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44381 * 324.96834 * 12 11 9 14 14 C 1.53038 * 109.45878 * 84.93111 * 12 11 9 15 15 C 1.53187 * 109.31524 * 58.66188 * 14 12 11 16 16 N 1.46916 * 108.77719 * 54.62999 * 15 14 12 17 17 C 1.36943 * 120.63134 * 126.41520 * 16 15 14 18 18 H 1.07995 * 119.99711 * 331.81586 * 17 16 15 19 19 C 1.38813 * 120.00236 * 151.81159 * 17 16 15 20 20 N 1.31625 * 119.99904 * 343.07999 * 19 17 16 21 21 Si 1.86792 * 119.99939 * 163.07696 * 19 17 16 22 22 H 1.48494 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47300 * 120.00509 * 21 19 17 24 24 H 1.48499 * 109.47371 * 240.00144 * 21 19 17 25 25 C 1.46927 * 118.74258 * 306.39537 * 16 15 14 26 26 C 1.53040 * 109.46534 * 205.00104 * 12 11 9 27 27 H 1.08996 * 109.52699 * 181.37304 * 26 12 11 28 28 O 1.42903 * 109.49662 * 61.29376 * 26 12 11 29 29 C 1.39163 * 120.23866 * 0.24912 * 8 7 6 30 30 C 1.37362 * 125.94515 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47066 * 89.98076 * 1 2 3 32 32 H 1.09005 * 109.47112 * 209.97580 * 1 2 3 33 33 H 1.08993 * 109.47562 * 329.97734 * 1 2 3 34 34 H 1.07999 * 120.00693 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.72101 * 179.97438 * 7 6 5 36 36 H 0.97008 * 120.00051 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.50072 * 298.70278 * 14 12 11 38 38 H 1.09005 * 109.52449 * 178.62569 * 14 12 11 39 39 H 1.09006 * 109.58163 * 294.84442 * 15 14 12 40 40 H 1.09005 * 109.70891 * 174.49594 * 15 14 12 41 41 H 0.96996 * 120.00033 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58449 * 293.82187 * 25 16 15 43 43 H 1.09000 * 109.59043 * 173.39481 * 25 16 15 44 44 H 0.96693 * 113.99642 * 180.16686 * 28 26 12 45 45 H 1.08001 * 120.24726 * 179.75099 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5026 -0.0019 7 6 4.4456 -2.8456 -0.0024 8 6 3.1370 -3.3502 -0.0031 9 6 2.9112 -4.8100 -0.0042 10 8 1.7777 -5.2498 -0.0052 11 7 3.9615 -5.6544 -0.0051 12 6 3.7376 -7.1022 -0.0068 13 1 2.8504 -7.3328 0.5829 14 6 3.5337 -7.5849 -1.4447 15 6 4.7682 -7.2283 -2.2787 16 7 5.9596 -7.7806 -1.6200 17 6 6.8275 -8.5856 -2.3085 18 1 6.4698 -9.1850 -3.1326 19 6 8.1670 -8.6311 -1.9473 20 7 8.6766 -7.6841 -1.1884 21 14 9.2464 -10.0365 -2.5382 22 1 8.4397 -10.9637 -3.3716 23 1 10.3677 -9.4934 -3.3465 24 1 9.7904 -10.7693 -1.3667 25 6 6.2026 -7.4526 -0.2086 26 6 4.9520 -7.8068 0.6023 27 1 4.7969 -8.8854 0.5792 28 8 5.1233 -7.3784 1.9547 29 6 2.0505 -2.4805 -0.0084 30 6 2.2713 -1.1121 -0.0005 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5141 34 1 5.6810 -1.1236 -0.0019 35 1 5.2826 -3.5281 -0.0032 36 1 4.8659 -5.3036 -0.0054 37 1 2.6549 -7.1003 -1.8700 38 1 3.3913 -8.6656 -1.4495 39 1 4.8598 -6.1445 -2.3507 40 1 4.6724 -7.6540 -3.2776 41 1 9.6125 -7.7160 -0.9357 42 1 6.4112 -6.3871 -0.1118 43 1 7.0518 -8.0282 0.1595 44 1 5.8780 -7.7837 2.4030 45 1 1.0428 -2.8689 -0.0129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090759117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:36 Heat of formation + Delta-G solvation = 62.369965 kcal Electronic energy + Delta-G solvation = -30457.864253 eV Core-core repulsion = 26285.493172 eV Total energy + Delta-G solvation = -4172.371080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.38694 -40.17405 -38.36898 -37.23767 -35.34803 -35.11985 -34.21985 -32.23158 -31.01800 -30.89297 -29.52782 -28.89919 -28.18409 -25.60111 -24.58314 -23.70831 -22.42634 -21.87613 -21.36032 -21.03959 -18.93173 -18.47023 -17.91615 -17.14143 -16.96701 -16.65360 -16.42035 -15.85186 -15.07631 -15.02420 -14.63438 -14.48603 -14.25558 -13.94517 -13.87530 -13.75386 -13.53923 -13.44955 -13.18103 -12.80636 -12.38805 -12.32843 -12.12295 -12.02120 -11.81721 -11.72310 -11.13423 -11.07801 -11.03124 -10.91340 -10.88902 -10.47999 -10.25965 -10.05549 -9.90163 -9.63984 -9.39594 -9.20403 -8.78899 -8.62219 -8.52048 -6.83668 -5.94350 -3.37992 0.15107 0.98439 1.87445 1.93276 2.89497 3.26474 3.28374 3.37545 3.39098 3.66377 3.74838 4.13021 4.35493 4.40445 4.52096 4.59120 4.65056 4.80883 4.84674 4.88918 5.06980 5.13925 5.21735 5.34485 5.39264 5.63250 5.66814 5.75750 5.77808 5.87019 5.96865 5.98789 6.05245 6.17114 6.21436 6.34960 6.37205 6.39447 6.65503 6.73152 6.85438 6.98856 7.33881 7.66831 7.73904 8.03683 8.07145 8.29164 8.36247 9.04349 9.66868 10.22321 11.13832 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002686 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.373684 B =10421.418913 C =11099.035698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.317 5.317 3 N -0.019 5.019 4 N -0.257 5.257 5 C 0.027 3.973 6 C -0.053 4.053 7 C -0.086 4.086 8 C -0.094 4.094 9 C 0.559 3.441 10 O -0.547 6.547 11 N -0.694 5.694 12 C 0.165 3.835 13 H 0.081 0.919 14 C -0.145 4.145 15 C 0.144 3.856 16 N -0.588 5.588 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.146 3.854 26 C 0.066 3.934 27 H 0.063 0.937 28 O -0.573 6.573 29 C -0.038 4.038 30 C 0.013 3.987 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.405 0.595 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.024 0.976 43 H 0.093 0.907 44 H 0.377 0.623 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 10.093 4.470 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.118 5.118 3 N 0.000 5.000 4 N -0.131 5.131 5 C -0.099 4.099 6 C -0.075 4.075 7 C -0.108 4.108 8 C -0.101 4.101 9 C 0.345 3.655 10 O -0.427 6.427 11 N -0.345 5.345 12 C 0.061 3.939 13 H 0.099 0.901 14 C -0.185 4.185 15 C 0.018 3.982 16 N -0.312 5.312 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C 0.019 3.981 26 C 0.005 3.995 27 H 0.081 0.919 28 O -0.378 6.378 29 C -0.061 4.061 30 C -0.106 4.106 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.372 11.668 4.370 19.021 hybrid contribution 1.381 -1.920 -0.179 2.372 sum -12.991 9.748 4.192 16.774 Atomic orbital electron populations 1.22269 0.72002 1.06043 1.05113 1.47096 1.08819 1.03002 1.52877 1.77975 0.96972 1.12353 1.12728 1.75354 1.07491 1.11384 1.18875 1.20088 0.93254 0.91155 1.05390 1.19952 0.97706 0.90989 0.98875 1.21009 0.96294 0.95313 0.98174 1.19844 0.93247 0.93538 1.03445 1.17954 0.85146 0.85497 0.76872 1.90744 1.22492 1.78382 1.51059 1.45918 1.09273 1.06746 1.72599 1.20868 0.97878 0.78575 0.96594 0.90091 1.22410 0.99893 1.01387 0.94825 1.20931 0.86218 0.96044 0.94991 1.43971 1.24407 1.56757 1.06047 1.19236 0.88125 1.16722 1.14337 0.91374 1.25062 0.96491 0.97794 1.00168 1.70011 1.13063 1.31243 1.40272 0.86216 0.80407 0.82000 0.78106 1.20206 1.21638 1.21509 1.21404 0.94073 0.98651 0.83985 1.22951 0.97443 0.97315 0.81802 0.91867 1.86411 1.53505 1.71979 1.25858 1.20011 1.00353 0.87529 0.98157 1.19603 0.91014 0.90788 1.09165 0.89045 0.88206 0.87831 0.83611 0.83822 0.75672 0.91631 0.90983 0.96166 0.92393 0.93531 0.95810 0.88864 0.77639 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.40 59.85 0.68 1.13 16 2 N -0.32 -3.35 3.80 -65.54 -0.25 -3.60 16 3 N -0.02 -0.25 13.07 60.35 0.79 0.54 16 4 N -0.26 -3.68 12.42 32.09 0.40 -3.28 16 5 C 0.03 0.36 7.36 -84.95 -0.63 -0.27 16 6 C -0.05 -0.63 10.03 -39.70 -0.40 -1.02 16 7 C -0.09 -1.03 9.46 -39.57 -0.37 -1.41 16 8 C -0.09 -1.24 5.88 -104.92 -0.62 -1.85 16 9 C 0.56 8.69 7.73 -12.39 -0.10 8.60 16 10 O -0.55 -9.76 15.98 5.30 0.08 -9.68 16 11 N -0.69 -10.91 4.10 -54.75 -0.22 -11.13 16 12 C 0.17 2.78 2.47 -67.89 -0.17 2.61 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.14 -2.44 5.77 -26.61 -0.15 -2.60 16 15 C 0.14 2.79 6.26 -3.72 -0.02 2.77 16 16 N -0.59 -13.24 2.99 -172.32 -0.52 -13.75 16 17 C -0.25 -6.46 9.58 -15.06 -0.14 -6.60 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -24.02 11.20 55.49 0.62 -23.40 16 21 Si 0.90 20.43 29.59 -169.99 -5.03 15.40 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.15 3.02 4.63 -3.71 -0.02 3.00 16 26 C 0.07 1.14 3.36 -26.61 -0.09 1.05 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 O -0.57 -9.13 13.21 -35.23 -0.47 -9.59 16 29 C -0.04 -0.45 9.59 -39.10 -0.38 -0.83 16 30 C 0.01 0.15 6.94 -84.23 -0.58 -0.43 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.14 1.59 6.36 -52.49 -0.33 1.26 16 36 H 0.41 6.24 4.86 -40.82 -0.20 6.04 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 40 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 43 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 44 H 0.38 4.76 9.08 45.56 0.41 5.18 16 45 H 0.14 1.55 7.63 -52.49 -0.40 1.15 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -32.14 370.05 -6.97 -39.12 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.89 Total: 9.64 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -3.07 Total: 4.16 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.82 Total: -54.62 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.38 Total: -19.27 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.14 -6.97 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090759117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.489 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds