Wall clock time and date at job start Wed Apr 1 2020 03:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28817 * 125.94260 * 2 1 4 4 N 1.28638 * 111.79355 * 180.02562 * 3 2 1 5 5 C 1.34748 * 109.29609 * 0.02562 * 4 3 2 6 6 C 1.39912 * 134.59687 * 180.02562 * 5 4 3 7 7 C 1.36159 * 119.97662 * 179.97438 * 6 5 4 8 8 C 1.40257 * 120.55849 * 0.02562 * 7 6 5 9 9 C 1.47717 * 119.87807 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99894 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00561 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00689 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44381 * 324.96834 * 12 11 9 14 14 C 1.53038 * 109.45878 * 84.93111 * 12 11 9 15 15 C 1.53187 * 109.31524 * 58.66188 * 14 12 11 16 16 N 1.46916 * 108.77719 * 54.62999 * 15 14 12 17 17 C 1.36943 * 120.63134 * 126.41520 * 16 15 14 18 18 H 1.07995 * 119.99711 * 331.81586 * 17 16 15 19 19 C 1.38813 * 120.00236 * 151.81159 * 17 16 15 20 20 N 1.31625 * 119.99904 * 343.07999 * 19 17 16 21 21 Si 1.86792 * 119.99939 * 163.07696 * 19 17 16 22 22 H 1.48494 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47300 * 120.00509 * 21 19 17 24 24 H 1.48499 * 109.47371 * 240.00144 * 21 19 17 25 25 C 1.46927 * 118.74258 * 306.39537 * 16 15 14 26 26 C 1.53040 * 109.46534 * 205.00104 * 12 11 9 27 27 H 1.08996 * 109.52699 * 181.37304 * 26 12 11 28 28 O 1.42903 * 109.49662 * 61.29376 * 26 12 11 29 29 C 1.39163 * 120.23866 * 0.24912 * 8 7 6 30 30 C 1.37362 * 125.94515 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47066 * 89.98076 * 1 2 3 32 32 H 1.09005 * 109.47112 * 209.97580 * 1 2 3 33 33 H 1.08993 * 109.47562 * 329.97734 * 1 2 3 34 34 H 1.07999 * 120.00693 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.72101 * 179.97438 * 7 6 5 36 36 H 0.97008 * 120.00051 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.50072 * 298.70278 * 14 12 11 38 38 H 1.09005 * 109.52449 * 178.62569 * 14 12 11 39 39 H 1.09006 * 109.58163 * 294.84442 * 15 14 12 40 40 H 1.09005 * 109.70891 * 174.49594 * 15 14 12 41 41 H 0.96996 * 120.00033 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58449 * 293.82187 * 25 16 15 43 43 H 1.09000 * 109.59043 * 173.39481 * 25 16 15 44 44 H 0.96693 * 113.99642 * 180.16686 * 28 26 12 45 45 H 1.08001 * 120.24726 * 179.75099 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5026 -0.0019 7 6 4.4456 -2.8456 -0.0024 8 6 3.1370 -3.3502 -0.0031 9 6 2.9112 -4.8100 -0.0042 10 8 1.7777 -5.2498 -0.0052 11 7 3.9615 -5.6544 -0.0051 12 6 3.7376 -7.1022 -0.0068 13 1 2.8504 -7.3328 0.5829 14 6 3.5337 -7.5849 -1.4447 15 6 4.7682 -7.2283 -2.2787 16 7 5.9596 -7.7806 -1.6200 17 6 6.8275 -8.5856 -2.3085 18 1 6.4698 -9.1850 -3.1326 19 6 8.1670 -8.6311 -1.9473 20 7 8.6766 -7.6841 -1.1884 21 14 9.2464 -10.0365 -2.5382 22 1 8.4397 -10.9637 -3.3716 23 1 10.3677 -9.4934 -3.3465 24 1 9.7904 -10.7693 -1.3667 25 6 6.2026 -7.4526 -0.2086 26 6 4.9520 -7.8068 0.6023 27 1 4.7969 -8.8854 0.5792 28 8 5.1233 -7.3784 1.9547 29 6 2.0505 -2.4805 -0.0084 30 6 2.2713 -1.1121 -0.0005 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5141 34 1 5.6810 -1.1236 -0.0019 35 1 5.2826 -3.5281 -0.0032 36 1 4.8659 -5.3036 -0.0054 37 1 2.6549 -7.1003 -1.8700 38 1 3.3913 -8.6656 -1.4495 39 1 4.8598 -6.1445 -2.3507 40 1 4.6724 -7.6540 -3.2776 41 1 9.6125 -7.7160 -0.9357 42 1 6.4112 -6.3871 -0.1118 43 1 7.0518 -8.0282 0.1595 44 1 5.8780 -7.7837 2.4030 45 1 1.0428 -2.8689 -0.0129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090759117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:34 Heat of formation + Delta-G solvation = 38.902612 kcal Electronic energy + Delta-G solvation = -30458.881873 eV Core-core repulsion = 26285.493172 eV Total energy + Delta-G solvation = -4173.388701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30427 -41.42994 -39.66734 -38.35908 -36.81697 -35.95524 -35.69429 -33.80164 -32.15792 -31.91477 -30.99010 -30.36860 -28.84644 -27.26715 -25.73048 -24.66624 -23.96514 -23.44225 -22.29201 -22.15332 -20.34622 -19.58870 -18.87515 -18.71717 -18.03833 -17.81190 -17.57309 -17.08414 -16.73577 -16.26046 -15.83078 -15.80385 -15.42345 -15.32687 -15.17654 -14.95975 -14.50687 -14.41083 -14.28167 -13.84877 -13.78621 -13.53586 -13.27407 -13.25446 -13.08763 -12.87403 -12.78507 -12.66946 -12.63806 -12.11758 -11.95451 -11.85137 -11.83735 -11.79559 -11.26932 -11.07834 -10.87546 -10.56296 -10.23121 -9.98870 -9.46330 -8.66760 -7.87185 -5.32380 -0.81376 0.04274 0.95889 1.14151 1.48052 1.52706 1.60848 1.80159 2.10137 2.52060 2.62547 2.82316 3.17114 3.30032 3.42732 3.54037 3.57872 3.69411 3.89897 3.93407 3.96139 4.15477 4.21631 4.27240 4.30908 4.40375 4.42203 4.50330 4.57749 4.73792 4.78149 4.82957 4.93107 4.99124 5.07539 5.11386 5.13397 5.20549 5.35017 5.38555 5.46600 5.53672 5.63179 5.69556 6.38465 6.49833 6.86339 7.12734 7.13118 7.16115 7.83658 8.34764 9.18249 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002686 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.373684 B =10421.418913 C =11099.035698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.302 5.302 3 N -0.027 5.027 4 N -0.290 5.290 5 C 0.013 3.987 6 C -0.056 4.056 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.563 3.437 10 O -0.571 6.571 11 N -0.694 5.694 12 C 0.168 3.832 13 H 0.081 0.919 14 C -0.132 4.132 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.262 4.262 18 H 0.066 0.934 19 C -0.042 4.042 20 N -0.926 5.926 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.296 1.296 24 H -0.289 1.289 25 C 0.156 3.844 26 C 0.083 3.917 27 H 0.064 0.936 28 O -0.573 6.573 29 C -0.024 4.024 30 C 0.004 3.996 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.407 0.593 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.014 0.986 43 H 0.065 0.935 44 H 0.392 0.608 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 10.131 4.614 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.104 5.104 3 N -0.008 5.008 4 N -0.163 5.163 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.104 4.104 8 C -0.116 4.116 9 C 0.350 3.650 10 O -0.452 6.452 11 N -0.345 5.345 12 C 0.063 3.937 13 H 0.099 0.901 14 C -0.172 4.172 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.238 4.238 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.223 1.223 24 H -0.216 1.216 25 C 0.030 3.970 26 C 0.022 3.978 27 H 0.082 0.918 28 O -0.380 6.380 29 C -0.046 4.046 30 C -0.115 4.115 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.179 0.821 35 H 0.167 0.833 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.241 0.759 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.905 11.720 4.523 20.268 hybrid contribution 1.744 -1.854 -0.223 2.555 sum -14.161 9.866 4.299 17.787 Atomic orbital electron populations 1.22816 0.68934 1.08042 1.07015 1.47551 1.10393 1.01920 1.50540 1.77895 0.96981 1.13113 1.12837 1.75321 1.08335 1.12021 1.20620 1.20408 0.94349 0.91173 1.05435 1.20114 0.98313 0.90709 0.98685 1.21030 0.96070 0.95463 0.97832 1.19698 0.94154 0.92285 1.05420 1.18195 0.84556 0.86272 0.75938 1.90725 1.23241 1.78982 1.52275 1.45883 1.09512 1.06381 1.72704 1.20780 0.97325 0.79219 0.96347 0.90145 1.22262 0.98721 1.01792 0.94428 1.20988 0.86073 0.95747 0.95226 1.44166 1.24817 1.56835 1.06856 1.19476 0.88707 1.16798 1.14221 0.91660 1.25670 0.97584 0.99649 1.00912 1.70128 1.12959 1.32551 1.41533 0.85321 0.78629 0.79700 0.77428 1.19500 1.22324 1.21617 1.21227 0.94679 0.97449 0.83684 1.22611 0.95859 0.97357 0.81992 0.91829 1.86393 1.54423 1.72227 1.24939 1.20084 1.00667 0.87226 0.96642 1.19654 0.91033 0.91169 1.09632 0.87123 0.86297 0.85885 0.82069 0.83267 0.75523 0.90708 0.90482 0.96285 0.92616 0.93994 0.96767 0.91693 0.75912 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.40 127.77 1.46 1.98 16 2 N -0.30 -5.82 3.80 -361.27 -1.37 -7.20 16 3 N -0.03 -0.67 13.07 37.02 0.48 -0.19 16 4 N -0.29 -8.16 12.42 -52.38 -0.65 -8.81 16 5 C 0.01 0.34 7.36 39.76 0.29 0.63 16 6 C -0.06 -1.29 10.03 22.19 0.22 -1.07 16 7 C -0.08 -1.90 9.46 22.28 0.21 -1.69 16 8 C -0.11 -2.73 5.88 -20.06 -0.12 -2.85 16 9 C 0.56 16.78 7.73 86.75 0.67 17.45 16 10 O -0.57 -19.50 15.98 -3.96 -0.06 -19.56 16 11 N -0.69 -21.06 4.10 -445.41 -1.83 -22.89 16 12 C 0.17 5.42 2.47 45.02 0.11 5.53 16 13 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.13 -4.26 5.77 30.67 0.18 -4.08 16 15 C 0.15 5.50 6.26 86.36 0.54 6.05 16 16 N -0.60 -26.99 2.99 -699.10 -2.09 -29.08 16 17 C -0.26 -13.24 9.58 84.03 0.81 -12.44 16 18 H 0.07 3.28 7.88 -2.91 -0.02 3.25 16 19 C -0.04 -2.16 4.92 84.86 0.42 -1.74 16 20 N -0.93 -49.85 11.20 21.65 0.24 -49.61 16 21 Si 0.96 42.09 29.59 68.60 2.03 44.12 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 25 C 0.16 6.46 4.63 86.36 0.40 6.86 16 26 C 0.08 2.79 3.36 30.67 0.10 2.89 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 28 O -0.57 -17.48 13.21 -148.98 -1.97 -19.45 16 29 C -0.02 -0.52 9.59 22.58 0.22 -0.31 16 30 C 0.00 0.10 6.94 39.02 0.27 0.37 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.15 3.22 6.36 -2.91 -0.02 3.20 16 36 H 0.41 12.23 4.86 -92.70 -0.45 11.78 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.02 0.73 7.74 -2.38 -0.02 0.72 16 40 H 0.06 2.11 7.93 -2.38 -0.02 2.09 16 41 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 42 H 0.01 0.62 6.64 -2.39 -0.02 0.60 16 43 H 0.06 3.07 6.06 -2.39 -0.01 3.06 16 44 H 0.39 9.40 9.08 -74.06 -0.67 8.73 16 45 H 0.16 3.03 7.63 -2.91 -0.02 3.00 16 Total: -1.00 -68.02 370.05 0.49 -67.52 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.06 Total: 27.56 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 5.78 Total: 17.57 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.22 Total: -117.78 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -2.03 Total: -39.01 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -68.02 0.49 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090759117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.426 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds