Wall clock time and date at job start Wed Apr 1 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28821 * 125.93943 * 2 1 4 4 N 1.28644 * 111.78703 * 180.02562 * 3 2 1 5 5 C 1.34749 * 109.29503 * 0.02562 * 4 3 2 6 6 C 1.39907 * 134.58954 * 180.02562 * 5 4 3 7 7 C 1.36159 * 119.97630 * 179.75655 * 6 5 4 8 8 C 1.40252 * 120.55664 * 0.51345 * 7 6 5 9 9 C 1.47713 * 119.88208 * 179.73502 * 8 7 6 10 10 O 1.21568 * 120.00322 * 179.73029 * 9 8 7 11 11 N 1.34777 * 120.00133 * 359.73109 * 9 8 7 12 12 C 1.46497 * 120.00361 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46396 * 35.02695 * 12 11 9 14 14 C 1.53044 * 109.46189 * 275.06459 * 12 11 9 15 15 C 1.52755 * 109.38132 * 301.22024 * 14 12 11 16 16 N 1.46923 * 109.00900 * 305.58408 * 15 14 12 17 17 C 1.36943 * 120.62930 * 233.58508 * 16 15 14 18 18 H 1.08000 * 119.99888 * 152.17192 * 17 16 15 19 19 C 1.38811 * 119.99955 * 332.17173 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46927 * 118.73893 * 53.31139 * 16 15 14 26 26 C 1.53046 * 109.46379 * 154.99790 * 12 11 9 27 27 H 1.08999 * 109.49861 * 178.60651 * 26 12 11 28 28 O 1.42898 * 109.49343 * 298.70602 * 26 12 11 29 29 C 1.39167 * 120.23715 * 359.46416 * 8 7 6 30 30 C 1.37366 * 125.94273 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46988 * 269.96121 * 1 2 3 32 32 H 1.09000 * 109.47090 * 29.95854 * 1 2 3 33 33 H 1.08997 * 109.46905 * 149.95348 * 1 2 3 34 34 H 1.08008 * 120.00997 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.72495 * 180.27598 * 7 6 5 36 36 H 0.97006 * 119.99741 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.49256 * 61.29397 * 14 12 11 38 38 H 1.09002 * 109.49531 * 181.39096 * 14 12 11 39 39 H 1.09005 * 109.50719 * 185.70148 * 15 14 12 40 40 H 1.09006 * 109.43430 * 65.42411 * 15 14 12 41 41 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58525 * 66.43417 * 25 16 15 43 43 H 1.08995 * 109.58430 * 186.71314 * 25 16 15 44 44 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 45 45 H 1.08003 * 120.24487 * 180.29842 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2211 1.0430 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0019 7 6 4.4457 -2.8456 0.0020 8 6 3.1371 -3.3502 -0.0042 9 6 2.9112 -4.8099 -0.0057 10 8 1.7779 -5.2497 -0.0062 11 7 3.9617 -5.6544 -0.0065 12 6 3.7377 -7.1021 -0.0086 13 1 2.8507 -7.3316 -0.5990 14 6 3.5335 -7.5885 1.4281 15 6 4.7647 -7.2384 2.2617 16 7 5.9593 -7.7846 1.6035 17 6 6.8265 -8.5920 2.2901 18 1 7.4114 -9.3297 1.7609 19 6 6.9539 -8.4622 3.6662 20 7 6.5221 -7.3739 4.2674 21 14 7.7383 -9.8321 4.6649 22 1 6.6899 -10.7888 5.1018 23 1 8.7397 -10.5427 3.8297 24 1 8.4088 -9.2540 5.8572 25 6 6.2027 -7.4530 0.1930 26 6 4.9524 -7.8052 -0.6190 27 1 4.7969 -8.8838 -0.5982 28 8 5.1241 -7.3733 -1.9703 29 6 2.0506 -2.4805 -0.0034 30 6 2.2714 -1.1121 -0.0005 31 1 -0.3633 -0.0007 1.0276 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.6811 -1.1235 -0.0019 35 1 5.2827 -3.5281 0.0062 36 1 4.8660 -5.3035 -0.0065 37 1 2.6545 -7.1049 1.8543 38 1 3.3914 -8.6693 1.4295 39 1 4.6656 -7.6717 3.2570 40 1 4.8537 -6.1548 2.3398 41 1 6.6114 -7.2830 5.2289 42 1 6.4114 -6.3873 0.0989 43 1 7.0536 -8.0258 -0.1754 44 1 5.8789 -7.7776 -2.4196 45 1 1.0428 -2.8690 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090759119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:46 Heat of formation + Delta-G solvation = 63.435327 kcal Electronic energy + Delta-G solvation = -30459.244920 eV Core-core repulsion = 26286.920038 eV Total energy + Delta-G solvation = -4172.324883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36981 -40.16991 -38.41132 -37.24295 -35.49826 -35.10170 -34.18208 -32.02730 -31.00873 -30.95106 -29.93682 -28.62911 -28.15946 -25.58923 -24.56743 -23.69733 -22.38254 -21.95236 -21.34679 -21.04642 -18.93723 -18.46439 -17.90703 -17.22389 -16.94904 -16.74227 -16.32395 -15.83884 -15.07915 -14.92786 -14.68375 -14.50021 -14.32162 -14.07285 -13.88469 -13.74598 -13.52407 -13.34678 -13.16643 -12.78255 -12.44362 -12.32387 -12.12966 -12.06820 -11.84961 -11.72206 -11.22556 -11.01598 -10.93975 -10.90133 -10.71985 -10.43060 -10.25261 -10.00700 -9.93602 -9.74950 -9.48752 -9.18716 -8.74134 -8.56665 -8.50673 -6.83090 -5.90986 -3.35522 0.16985 0.99760 1.89205 1.95163 2.91544 3.27560 3.31181 3.38428 3.39458 3.68615 3.75855 4.14735 4.31379 4.41941 4.46486 4.61395 4.64974 4.82233 4.85762 4.90884 5.08481 5.13327 5.24192 5.27322 5.39814 5.51864 5.64131 5.66941 5.78533 5.89435 5.98366 6.00548 6.05779 6.18131 6.22850 6.36693 6.39979 6.47814 6.58110 6.63099 6.83907 7.22174 7.53981 7.67785 7.73758 7.86239 8.08581 8.31067 8.38061 9.06903 9.69129 10.23856 11.17091 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.002782 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.272250 B =10063.714101 C =10750.550053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.317 5.317 3 N -0.019 5.019 4 N -0.257 5.257 5 C 0.027 3.973 6 C -0.054 4.054 7 C -0.086 4.086 8 C -0.093 4.093 9 C 0.560 3.440 10 O -0.546 6.546 11 N -0.694 5.694 12 C 0.166 3.834 13 H 0.081 0.919 14 C -0.154 4.154 15 C 0.171 3.829 16 N -0.586 5.586 17 C -0.261 4.261 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.118 3.882 26 C 0.075 3.925 27 H 0.068 0.932 28 O -0.571 6.571 29 C -0.037 4.037 30 C 0.013 3.987 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.403 0.597 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.022 0.978 43 H 0.060 0.940 44 H 0.375 0.625 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 9.531 -10.402 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.118 5.118 3 N 0.000 5.000 4 N -0.131 5.131 5 C -0.099 4.099 6 C -0.076 4.076 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.346 3.654 10 O -0.425 6.425 11 N -0.345 5.345 12 C 0.061 3.939 13 H 0.099 0.901 14 C -0.194 4.194 15 C 0.045 3.955 16 N -0.311 5.311 17 C -0.390 4.390 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.204 1.204 24 H -0.217 1.217 25 C -0.009 4.009 26 C 0.014 3.986 27 H 0.086 0.914 28 O -0.375 6.375 29 C -0.060 4.060 30 C -0.105 4.105 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.240 0.760 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.221 0.779 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.399 11.139 -10.074 18.267 hybrid contribution 1.110 -1.907 0.569 2.278 sum -9.289 9.232 -9.505 16.182 Atomic orbital electron populations 1.22273 0.71986 1.06021 1.05156 1.47099 1.08829 1.02996 1.52846 1.77975 0.96967 1.12351 1.12727 1.75351 1.07510 1.11370 1.18914 1.20076 0.93255 0.91158 1.05405 1.19932 0.97666 0.90985 0.98997 1.20965 0.96239 0.95248 0.98257 1.19836 0.93248 0.93541 1.03373 1.17928 0.85135 0.85474 0.76825 1.90745 1.22480 1.78355 1.50896 1.45851 1.09116 1.06723 1.72825 1.20889 0.97260 0.78510 0.97193 0.90083 1.22534 1.01267 1.01113 0.94484 1.20717 0.82209 0.96298 0.96270 1.43997 1.23877 1.57384 1.05797 1.19156 1.19190 1.10625 0.90017 0.91535 1.25047 0.99627 0.96681 0.97889 1.70022 1.50122 1.24574 1.09400 0.86274 0.78902 0.81650 0.79800 1.21340 1.20405 1.21703 1.21540 0.94490 0.97730 0.87184 1.22755 0.96892 0.97733 0.81225 0.91419 1.86481 1.53413 1.71710 1.25917 1.20015 1.00384 0.87536 0.98058 1.19597 0.91013 0.90788 1.09125 0.89013 0.87835 0.88202 0.83670 0.83996 0.75974 0.91723 0.91349 0.89176 0.96017 0.93453 0.96074 0.92145 0.77893 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.41 59.85 0.68 1.15 16 2 N -0.32 -3.43 3.80 -65.54 -0.25 -3.68 16 3 N -0.02 -0.25 13.07 60.35 0.79 0.54 16 4 N -0.26 -3.72 12.42 32.09 0.40 -3.32 16 5 C 0.03 0.36 7.36 -84.95 -0.63 -0.26 16 6 C -0.05 -0.63 10.03 -39.70 -0.40 -1.03 16 7 C -0.09 -1.02 9.46 -39.57 -0.37 -1.40 16 8 C -0.09 -1.25 5.88 -104.92 -0.62 -1.87 16 9 C 0.56 8.92 7.73 -12.39 -0.10 8.83 16 10 O -0.55 -10.03 15.98 5.31 0.08 -9.94 16 11 N -0.69 -10.92 4.11 -54.75 -0.22 -11.15 16 12 C 0.17 2.79 2.47 -67.89 -0.17 2.62 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.15 -2.86 5.75 -26.83 -0.15 -3.01 16 15 C 0.17 3.77 5.03 -3.94 -0.02 3.75 16 16 N -0.59 -13.25 3.00 -172.58 -0.52 -13.77 16 17 C -0.26 -6.62 9.58 -15.06 -0.14 -6.76 16 18 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 19 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 20 N -0.90 -24.70 11.19 55.49 0.62 -24.08 16 21 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.12 2.14 5.85 -3.71 -0.02 2.11 16 26 C 0.07 1.18 3.36 -26.61 -0.09 1.09 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 O -0.57 -7.89 13.21 -35.23 -0.47 -8.36 16 29 C -0.04 -0.46 9.59 -39.10 -0.38 -0.83 16 30 C 0.01 0.16 6.93 -84.24 -0.58 -0.42 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.14 1.51 6.36 -52.49 -0.33 1.18 16 36 H 0.40 5.98 4.86 -40.82 -0.20 5.78 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 40 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.02 0.38 6.64 -51.93 -0.34 0.04 16 43 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 44 H 0.37 3.62 9.08 45.56 0.41 4.04 16 45 H 0.14 1.61 7.63 -52.48 -0.40 1.21 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -33.01 370.00 -6.98 -39.99 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.89 Total: 8.44 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.07 Total: 4.07 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.82 Total: -55.45 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.38 Total: -18.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.01 -6.98 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090759119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.429 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds