Wall clock time and date at job start Wed Apr 1 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28821 * 125.93943 * 2 1 4 4 N 1.28644 * 111.78703 * 180.02562 * 3 2 1 5 5 C 1.34749 * 109.29503 * 0.02562 * 4 3 2 6 6 C 1.39907 * 134.58954 * 180.02562 * 5 4 3 7 7 C 1.36159 * 119.97630 * 179.75655 * 6 5 4 8 8 C 1.40252 * 120.55664 * 0.51345 * 7 6 5 9 9 C 1.47713 * 119.88208 * 179.73502 * 8 7 6 10 10 O 1.21568 * 120.00322 * 179.73029 * 9 8 7 11 11 N 1.34777 * 120.00133 * 359.73109 * 9 8 7 12 12 C 1.46497 * 120.00361 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46396 * 35.02695 * 12 11 9 14 14 C 1.53044 * 109.46189 * 275.06459 * 12 11 9 15 15 C 1.52755 * 109.38132 * 301.22024 * 14 12 11 16 16 N 1.46923 * 109.00900 * 305.58408 * 15 14 12 17 17 C 1.36943 * 120.62930 * 233.58508 * 16 15 14 18 18 H 1.08000 * 119.99888 * 152.17192 * 17 16 15 19 19 C 1.38811 * 119.99955 * 332.17173 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46927 * 118.73893 * 53.31139 * 16 15 14 26 26 C 1.53046 * 109.46379 * 154.99790 * 12 11 9 27 27 H 1.08999 * 109.49861 * 178.60651 * 26 12 11 28 28 O 1.42898 * 109.49343 * 298.70602 * 26 12 11 29 29 C 1.39167 * 120.23715 * 359.46416 * 8 7 6 30 30 C 1.37366 * 125.94273 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46988 * 269.96121 * 1 2 3 32 32 H 1.09000 * 109.47090 * 29.95854 * 1 2 3 33 33 H 1.08997 * 109.46905 * 149.95348 * 1 2 3 34 34 H 1.08008 * 120.00997 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.72495 * 180.27598 * 7 6 5 36 36 H 0.97006 * 119.99741 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.49256 * 61.29397 * 14 12 11 38 38 H 1.09002 * 109.49531 * 181.39096 * 14 12 11 39 39 H 1.09005 * 109.50719 * 185.70148 * 15 14 12 40 40 H 1.09006 * 109.43430 * 65.42411 * 15 14 12 41 41 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58525 * 66.43417 * 25 16 15 43 43 H 1.08995 * 109.58430 * 186.71314 * 25 16 15 44 44 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 45 45 H 1.08003 * 120.24487 * 180.29842 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2211 1.0430 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0019 7 6 4.4457 -2.8456 0.0020 8 6 3.1371 -3.3502 -0.0042 9 6 2.9112 -4.8099 -0.0057 10 8 1.7779 -5.2497 -0.0062 11 7 3.9617 -5.6544 -0.0065 12 6 3.7377 -7.1021 -0.0086 13 1 2.8507 -7.3316 -0.5990 14 6 3.5335 -7.5885 1.4281 15 6 4.7647 -7.2384 2.2617 16 7 5.9593 -7.7846 1.6035 17 6 6.8265 -8.5920 2.2901 18 1 7.4114 -9.3297 1.7609 19 6 6.9539 -8.4622 3.6662 20 7 6.5221 -7.3739 4.2674 21 14 7.7383 -9.8321 4.6649 22 1 6.6899 -10.7888 5.1018 23 1 8.7397 -10.5427 3.8297 24 1 8.4088 -9.2540 5.8572 25 6 6.2027 -7.4530 0.1930 26 6 4.9524 -7.8052 -0.6190 27 1 4.7969 -8.8838 -0.5982 28 8 5.1241 -7.3733 -1.9703 29 6 2.0506 -2.4805 -0.0034 30 6 2.2714 -1.1121 -0.0005 31 1 -0.3633 -0.0007 1.0276 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.6811 -1.1235 -0.0019 35 1 5.2827 -3.5281 0.0062 36 1 4.8660 -5.3035 -0.0065 37 1 2.6545 -7.1049 1.8543 38 1 3.3914 -8.6693 1.4295 39 1 4.6656 -7.6717 3.2570 40 1 4.8537 -6.1548 2.3398 41 1 6.6114 -7.2830 5.2289 42 1 6.4114 -6.3873 0.0989 43 1 7.0536 -8.0258 -0.1754 44 1 5.8789 -7.7776 -2.4196 45 1 1.0428 -2.8690 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090759119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:44 Heat of formation + Delta-G solvation = 38.818385 kcal Electronic energy + Delta-G solvation = -30460.312391 eV Core-core repulsion = 26286.920038 eV Total energy + Delta-G solvation = -4173.392353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -44.30401 -41.43962 -39.68328 -38.36212 -36.90558 -35.95279 -35.63941 -33.63054 -32.34729 -31.91741 -31.28726 -30.08279 -28.85105 -27.26927 -25.73205 -24.66699 -23.89126 -23.56251 -22.30074 -22.16104 -20.36922 -19.60401 -18.88828 -18.72668 -17.95504 -17.81428 -17.54885 -17.07044 -16.79928 -16.24780 -15.91182 -15.82922 -15.47365 -15.33286 -15.19408 -14.88863 -14.50677 -14.41499 -14.30026 -13.84700 -13.78717 -13.53529 -13.28517 -13.23870 -13.09147 -12.97972 -12.81367 -12.74106 -12.31495 -12.15645 -11.96376 -11.85661 -11.84433 -11.81264 -11.29836 -11.07352 -10.96244 -10.48617 -10.23547 -9.99239 -9.46312 -8.67810 -7.86480 -5.31883 -0.81477 0.04644 0.95620 1.13728 1.49316 1.52023 1.59044 1.80192 2.09980 2.51623 2.62761 2.82211 3.18422 3.30084 3.42794 3.53795 3.57948 3.68951 3.89565 3.92930 3.93573 4.09146 4.16887 4.25951 4.30705 4.41475 4.42090 4.56508 4.57208 4.70704 4.77938 4.82629 4.91705 4.97461 5.07008 5.08082 5.12034 5.17883 5.37658 5.44156 5.47305 5.52038 5.66450 5.74396 6.38329 6.49675 6.92773 7.12482 7.13921 7.15453 7.84626 8.34817 9.19395 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.002782 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.272250 B =10063.714101 C =10750.550053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.303 5.303 3 N -0.027 5.027 4 N -0.289 5.289 5 C 0.013 3.987 6 C -0.055 4.055 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.561 3.439 10 O -0.573 6.573 11 N -0.692 5.692 12 C 0.168 3.832 13 H 0.080 0.920 14 C -0.141 4.141 15 C 0.183 3.817 16 N -0.601 5.601 17 C -0.261 4.261 18 H 0.072 0.928 19 C -0.046 4.046 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.289 1.289 23 H -0.267 1.267 24 H -0.299 1.299 25 C 0.117 3.883 26 C 0.095 3.905 27 H 0.072 0.928 28 O -0.570 6.570 29 C -0.026 4.026 30 C 0.004 3.996 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.407 0.593 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.248 0.752 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.396 0.604 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 9.334 -11.927 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.105 5.105 3 N -0.008 5.008 4 N -0.162 5.162 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.103 4.103 8 C -0.116 4.116 9 C 0.349 3.651 10 O -0.455 6.455 11 N -0.343 5.343 12 C 0.063 3.937 13 H 0.098 0.902 14 C -0.181 4.181 15 C 0.057 3.943 16 N -0.326 5.326 17 C -0.391 4.391 18 H 0.090 0.910 19 C -0.242 4.242 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.216 1.216 23 H -0.191 1.191 24 H -0.226 1.226 25 C -0.009 4.009 26 C 0.034 3.966 27 H 0.089 0.911 28 O -0.377 6.377 29 C -0.049 4.049 30 C -0.116 4.116 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.246 0.754 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.246 0.754 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.671 10.948 -11.652 19.223 hybrid contribution 1.123 -1.784 0.967 2.320 sum -9.549 9.164 -10.685 17.009 Atomic orbital electron populations 1.22807 0.68994 1.08050 1.06938 1.47546 1.10381 1.01943 1.50609 1.77894 0.97000 1.13080 1.12852 1.75316 1.08309 1.11985 1.20590 1.20429 0.94338 0.91189 1.05437 1.20139 0.98358 0.90651 0.98577 1.21046 0.95984 0.95520 0.97763 1.19714 0.94332 0.92212 1.05338 1.18236 0.84620 0.86387 0.75894 1.90723 1.23432 1.79033 1.52271 1.45804 1.09435 1.06328 1.72712 1.20767 0.97902 0.79260 0.95728 0.90177 1.22331 0.99195 1.01275 0.95293 1.20410 0.83765 0.94856 0.95232 1.44157 1.23687 1.57340 1.07413 1.19491 1.18567 1.10667 0.90376 0.91010 1.25714 1.00984 0.98436 0.99024 1.70164 1.52099 1.26280 1.08966 0.85354 0.78113 0.79264 0.78205 1.21593 1.19148 1.22644 1.21700 0.96100 0.98252 0.84884 1.22346 0.94821 0.97614 0.81846 0.91060 1.86455 1.54758 1.71985 1.24523 1.20078 1.00659 0.87347 0.96829 1.19654 0.91141 0.91121 1.09644 0.87290 0.85780 0.86340 0.81752 0.82850 0.75440 0.92114 0.91086 0.92914 0.97647 0.94242 0.95397 0.91201 0.75419 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.41 127.77 1.46 2.05 16 2 N -0.30 -6.10 3.80 -361.27 -1.37 -7.47 16 3 N -0.03 -0.69 13.07 37.02 0.48 -0.21 16 4 N -0.29 -8.23 12.42 -52.39 -0.65 -8.88 16 5 C 0.01 0.33 7.36 39.75 0.29 0.62 16 6 C -0.06 -1.25 10.03 22.19 0.22 -1.03 16 7 C -0.08 -1.87 9.46 22.28 0.21 -1.66 16 8 C -0.11 -2.84 5.88 -20.06 -0.12 -2.96 16 9 C 0.56 17.41 7.73 86.75 0.67 18.08 16 10 O -0.57 -20.68 15.98 -3.93 -0.06 -20.74 16 11 N -0.69 -21.02 4.11 -445.40 -1.83 -22.85 16 12 C 0.17 5.44 2.47 45.02 0.11 5.55 16 13 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.14 -5.19 5.75 30.53 0.18 -5.01 16 15 C 0.18 8.20 5.03 86.22 0.43 8.64 16 16 N -0.60 -26.85 3.00 -699.93 -2.10 -28.95 16 17 C -0.26 -13.12 9.58 84.03 0.81 -12.31 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -2.40 4.91 84.86 0.42 -1.98 16 20 N -0.93 -52.28 11.19 21.65 0.24 -52.04 16 21 Si 0.96 42.77 29.59 68.60 2.03 44.79 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.12 4.01 5.85 86.36 0.50 4.51 16 26 C 0.09 2.77 3.36 30.67 0.10 2.88 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 O -0.57 -13.96 13.21 -148.98 -1.97 -15.93 16 29 C -0.03 -0.62 9.59 22.58 0.22 -0.41 16 30 C 0.00 0.08 6.93 39.02 0.27 0.36 16 31 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.15 3.07 6.36 -2.91 -0.02 3.05 16 36 H 0.41 11.55 4.86 -92.70 -0.45 11.10 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.05 2.76 6.04 -2.38 -0.01 2.75 16 40 H 0.01 0.26 7.74 -2.38 -0.02 0.24 16 41 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.03 0.94 6.64 -2.38 -0.02 0.93 16 43 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 44 H 0.40 6.19 9.08 -74.06 -0.67 5.52 16 45 H 0.16 3.24 7.63 -2.91 -0.02 3.22 16 Total: -1.00 -71.34 370.00 0.48 -70.86 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.06 Total: 24.07 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.77 Total: 17.33 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -5.23 Total: -120.39 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -2.03 Total: -36.66 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.34 0.48 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090759119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.680 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds