Wall clock time and date at job start Wed Apr 1 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.40249 * 126.66453 * 2 1 4 4 N 1.28659 * 109.42355 * 179.97438 * 3 2 1 5 5 C 1.35404 * 110.10430 * 359.97438 * 4 3 2 6 6 C 1.40118 * 133.02731 * 179.97438 * 5 4 3 7 7 C 1.37594 * 120.14944 * 179.97438 * 6 5 4 8 8 C 1.38482 * 120.80667 * 0.02562 * 7 6 5 9 9 C 1.39220 * 120.27033 * 359.97438 * 8 7 6 10 10 C 1.47530 * 120.24129 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99441 * 230.50524 * 10 9 8 12 12 N 1.34769 * 120.00364 * 50.50380 * 10 9 8 13 13 C 1.46501 * 119.99972 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46277 * 35.02800 * 13 12 10 15 15 C 1.53043 * 109.44893 * 275.05999 * 13 12 10 16 16 C 1.53188 * 109.31284 * 301.35267 * 15 13 12 17 17 N 1.46926 * 108.77553 * 305.36268 * 16 15 13 18 18 C 1.36936 * 120.63400 * 233.58569 * 17 16 15 19 19 H 1.08002 * 119.99675 * 27.54398 * 18 17 16 20 20 C 1.38812 * 120.00614 * 207.54766 * 18 17 16 21 21 N 1.31626 * 119.99464 * 17.05552 * 20 18 17 22 22 Si 1.86796 * 120.00426 * 197.06677 * 20 18 17 23 23 H 1.48503 * 109.47100 * 59.99155 * 22 20 18 24 24 H 1.48492 * 109.47394 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46782 * 299.99689 * 22 20 18 26 26 C 1.46927 * 118.73787 * 53.61136 * 17 16 15 27 27 C 1.53038 * 109.46035 * 155.00135 * 13 12 10 28 28 H 1.09001 * 109.50041 * 178.62492 * 27 13 12 29 29 O 1.42899 * 109.49678 * 298.68879 * 27 13 12 30 30 C 1.36974 * 126.65929 * 180.25379 * 2 1 3 31 31 H 1.08995 * 109.46926 * 99.01739 * 1 2 3 32 32 H 1.09004 * 109.46848 * 219.02229 * 1 2 3 33 33 H 1.09000 * 109.46579 * 339.01462 * 1 2 3 34 34 H 1.07998 * 119.92131 * 359.97438 * 6 5 4 35 35 H 1.08011 * 119.59987 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.86787 * 179.97438 * 8 7 6 37 37 H 0.96999 * 119.99900 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.49606 * 61.30339 * 15 13 12 39 39 H 1.09000 * 109.49451 * 181.40268 * 15 13 12 40 40 H 1.09004 * 109.59042 * 65.15049 * 16 15 13 41 41 H 1.09000 * 109.58882 * 185.58116 * 16 15 13 42 42 H 0.97000 * 119.99685 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.58589 * 186.60187 * 26 17 16 44 44 H 1.09001 * 109.58824 * 66.17606 * 26 17 16 45 45 H 0.96708 * 114.00029 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3026 1.1250 0.0000 4 7 3.5313 0.7437 0.0005 5 6 3.5990 -0.6087 0.0015 6 6 4.6698 -1.5124 0.0019 7 6 4.4305 -2.8674 0.0035 8 6 3.1359 -3.3590 0.0041 9 6 2.0530 -2.4840 0.0037 10 6 0.6740 -3.0084 0.0050 11 8 -0.1326 -2.5993 -0.8077 12 7 0.3084 -3.9408 0.9068 13 6 -1.0611 -4.4611 0.9083 14 1 -1.4298 -4.5162 -0.1159 15 6 -1.9595 -3.5287 1.7242 16 6 -1.4184 -3.4266 3.1537 17 7 -1.2916 -4.7809 3.7092 18 6 -1.8776 -5.1025 4.9043 19 1 -2.7618 -4.5755 5.2313 20 6 -1.3354 -6.1059 5.6956 21 7 -0.1020 -6.5149 5.4859 22 14 -2.3559 -6.8757 7.0576 23 1 -3.5722 -7.4967 6.4741 24 1 -1.5534 -7.9154 7.7502 25 1 -2.7540 -5.8270 8.0308 26 6 -0.5236 -5.7834 2.9583 27 6 -1.0747 -5.8590 1.5309 28 1 -2.0969 -6.2368 1.5547 29 8 -0.2600 -6.7365 0.7510 30 6 2.2829 -1.0988 -0.0049 31 1 -0.3633 -0.1611 -1.0149 32 1 -0.3633 -0.7984 0.6471 33 1 -0.3632 0.9595 0.3680 34 1 5.6852 -1.1446 0.0010 35 1 5.2626 -3.5561 0.0042 36 1 2.9655 -4.4254 0.0049 37 1 0.9521 -4.2674 1.5548 38 1 -1.9678 -2.5394 1.2668 39 1 -2.9734 -3.9282 1.7466 40 1 -0.4412 -2.9439 3.1410 41 1 -2.1080 -2.8442 3.7647 42 1 0.2769 -7.2163 6.0386 43 1 -0.6228 -6.7560 3.4403 44 1 0.5266 -5.4929 2.9295 45 1 -0.2221 -7.6419 1.0885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090857769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:05 Heat of formation + Delta-G solvation = 57.785926 kcal Electronic energy + Delta-G solvation = -31330.502492 eV Core-core repulsion = 27157.932633 eV Total energy + Delta-G solvation = -4172.569859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.23831 -40.03008 -38.19077 -37.32034 -35.40454 -34.64966 -34.19756 -32.27608 -31.04025 -30.42737 -29.57784 -28.95929 -27.52593 -25.53573 -24.57757 -22.87868 -22.75025 -22.29904 -21.81919 -20.32665 -18.89798 -18.31730 -17.57375 -17.05178 -16.68960 -16.59508 -16.22710 -15.71969 -15.43953 -15.05290 -14.97126 -14.39435 -14.25411 -13.94782 -13.78696 -13.55556 -13.48124 -13.13224 -12.81299 -12.57828 -12.44821 -12.30815 -12.12156 -11.96863 -11.86026 -11.79776 -11.22810 -11.19414 -11.11936 -10.89194 -10.75641 -10.56265 -10.32575 -10.10128 -9.90716 -9.68777 -9.45439 -9.06486 -8.87416 -8.64850 -8.44366 -6.89174 -5.97983 -3.41622 0.14964 1.09308 1.90852 2.00336 2.72068 3.21735 3.27252 3.33732 3.34695 3.46282 3.91347 4.31033 4.35514 4.44879 4.49933 4.61767 4.77499 4.95148 5.12369 5.15578 5.16773 5.28693 5.30286 5.37609 5.48707 5.54721 5.61490 5.69187 5.74062 5.80496 5.90279 5.98500 6.06062 6.10380 6.25788 6.28166 6.33668 6.46669 6.56816 6.65326 6.77326 6.93855 7.30366 7.61556 7.64902 7.85583 7.97934 8.24216 8.26231 9.00150 9.62636 10.17565 11.10141 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.003215 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.405549 B = 8705.894410 C = 8763.733256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.382 5.382 3 N -0.010 5.010 4 N -0.220 5.220 5 C -0.026 4.026 6 C -0.016 4.016 7 C -0.139 4.139 8 C -0.031 4.031 9 C -0.128 4.128 10 C 0.558 3.442 11 O -0.546 6.546 12 N -0.691 5.691 13 C 0.164 3.836 14 H 0.082 0.918 15 C -0.144 4.144 16 C 0.144 3.856 17 N -0.586 5.586 18 C -0.258 4.258 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.145 3.855 27 C 0.067 3.933 28 H 0.063 0.937 29 O -0.573 6.573 30 C 0.125 3.875 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.407 0.593 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.256 0.744 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 4.468 -10.909 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.175 5.175 3 N 0.010 4.990 4 N -0.098 5.098 5 C -0.150 4.150 6 C -0.038 4.038 7 C -0.160 4.160 8 C -0.053 4.053 9 C -0.136 4.136 10 C 0.344 3.656 11 O -0.425 6.425 12 N -0.342 5.342 13 C 0.059 3.941 14 H 0.100 0.900 15 C -0.185 4.185 16 C 0.018 3.982 17 N -0.311 5.311 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.018 3.982 27 C 0.006 3.994 28 H 0.081 0.919 29 O -0.378 6.378 30 C 0.002 3.998 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.244 0.756 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.813 6.737 -11.707 14.339 hybrid contribution -0.525 -2.157 1.439 2.646 sum 4.287 4.579 -10.268 12.032 Atomic orbital electron populations 1.22193 0.71897 1.04574 1.05082 1.50049 1.08271 1.03099 1.56116 1.81622 0.94027 1.07707 1.15611 1.74838 1.11471 1.10227 1.13307 1.19885 0.92945 0.90293 1.11879 1.20593 0.97538 0.91398 0.94314 1.20940 0.97051 0.94747 1.03270 1.21407 0.91172 0.99882 0.92873 1.18905 0.94879 0.89410 1.10395 1.18010 0.86625 0.79734 0.81236 1.90768 1.52876 1.59701 1.39162 1.46020 1.13959 1.40266 1.33938 1.20892 0.81349 0.91925 0.99908 0.90021 1.22416 0.99326 0.98627 0.98090 1.20923 0.97623 0.88261 0.91376 1.43943 1.61555 1.04563 1.21001 1.19164 1.05808 1.18385 0.95406 0.91415 1.25044 0.95237 1.01342 0.97743 1.69997 1.12095 1.31200 1.41336 0.86340 0.79562 0.79048 0.81664 1.20939 1.21536 1.20774 1.21421 0.93022 0.96720 0.87005 1.22932 0.94592 0.88260 0.93611 0.91880 1.86396 1.72336 1.24096 1.54961 1.18960 0.91066 0.89151 1.00649 0.88977 0.89090 0.88808 0.84028 0.83779 0.83608 0.75574 0.91954 0.90841 0.96409 0.92405 0.93392 0.88721 0.95790 0.77573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 9.79 59.85 0.59 1.83 16 2 N -0.38 -5.56 4.10 -65.27 -0.27 -5.82 16 3 N -0.01 -0.15 13.72 60.35 0.83 0.68 16 4 N -0.22 -3.34 12.40 32.15 0.40 -2.94 16 5 C -0.03 -0.36 7.26 -84.76 -0.62 -0.97 16 6 C -0.02 -0.17 10.09 -39.11 -0.39 -0.56 16 7 C -0.14 -1.25 9.98 -39.73 -0.40 -1.65 16 8 C -0.03 -0.34 9.60 -39.13 -0.38 -0.71 16 9 C -0.13 -1.76 5.67 -104.92 -0.60 -2.35 16 10 C 0.56 8.45 6.10 -12.48 -0.08 8.38 16 11 O -0.55 -9.26 14.04 5.28 0.07 -9.18 16 12 N -0.69 -10.48 4.11 -54.81 -0.23 -10.71 16 13 C 0.16 2.63 2.47 -67.89 -0.17 2.46 16 14 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 15 C -0.14 -2.32 5.77 -26.61 -0.15 -2.47 16 16 C 0.14 2.74 6.26 -3.71 -0.02 2.72 16 17 N -0.59 -13.08 3.00 -172.32 -0.52 -13.59 16 18 C -0.26 -6.51 9.59 -15.06 -0.14 -6.65 16 19 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 20 C 0.01 0.13 4.92 -17.43 -0.09 0.05 16 21 N -0.90 -23.94 11.16 55.49 0.62 -23.32 16 22 Si 0.90 20.29 29.59 -169.99 -5.03 15.26 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.15 2.96 4.64 -3.71 -0.02 2.95 16 27 C 0.07 1.12 3.36 -26.61 -0.09 1.03 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 O -0.57 -8.72 13.21 -35.23 -0.47 -9.18 16 30 C 0.13 1.84 6.82 -83.92 -0.57 1.27 16 31 H 0.09 1.10 7.68 -51.93 -0.40 0.70 16 32 H 0.09 1.17 6.55 -51.93 -0.34 0.83 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.41 6.26 6.72 -40.82 -0.27 5.99 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 42 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 43 H 0.09 2.19 6.01 -51.93 -0.31 1.88 16 44 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 45 H 0.38 4.53 9.08 45.56 0.41 4.95 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -30.72 367.83 -7.13 -37.86 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.97 Total: 10.09 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -3.12 Total: 5.31 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.84 Total: -55.70 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.39 Total: -18.37 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.72 -7.13 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090857769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.642 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds