Wall clock time and date at job start Wed Apr 1 2020 03:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.40249 * 126.66453 * 2 1 4 4 N 1.28659 * 109.42355 * 179.97438 * 3 2 1 5 5 C 1.35404 * 110.10430 * 359.97438 * 4 3 2 6 6 C 1.40118 * 133.02731 * 179.97438 * 5 4 3 7 7 C 1.37594 * 120.14944 * 179.97438 * 6 5 4 8 8 C 1.38482 * 120.80667 * 0.02562 * 7 6 5 9 9 C 1.39220 * 120.27033 * 359.97438 * 8 7 6 10 10 C 1.47530 * 120.24129 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99441 * 230.50524 * 10 9 8 12 12 N 1.34769 * 120.00364 * 50.50380 * 10 9 8 13 13 C 1.46501 * 119.99972 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46277 * 35.02800 * 13 12 10 15 15 C 1.53043 * 109.44893 * 275.05999 * 13 12 10 16 16 C 1.53188 * 109.31284 * 301.35267 * 15 13 12 17 17 N 1.46926 * 108.77553 * 305.36268 * 16 15 13 18 18 C 1.36936 * 120.63400 * 233.58569 * 17 16 15 19 19 H 1.08002 * 119.99675 * 27.54398 * 18 17 16 20 20 C 1.38812 * 120.00614 * 207.54766 * 18 17 16 21 21 N 1.31626 * 119.99464 * 17.05552 * 20 18 17 22 22 Si 1.86796 * 120.00426 * 197.06677 * 20 18 17 23 23 H 1.48503 * 109.47100 * 59.99155 * 22 20 18 24 24 H 1.48492 * 109.47394 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46782 * 299.99689 * 22 20 18 26 26 C 1.46927 * 118.73787 * 53.61136 * 17 16 15 27 27 C 1.53038 * 109.46035 * 155.00135 * 13 12 10 28 28 H 1.09001 * 109.50041 * 178.62492 * 27 13 12 29 29 O 1.42899 * 109.49678 * 298.68879 * 27 13 12 30 30 C 1.36974 * 126.65929 * 180.25379 * 2 1 3 31 31 H 1.08995 * 109.46926 * 99.01739 * 1 2 3 32 32 H 1.09004 * 109.46848 * 219.02229 * 1 2 3 33 33 H 1.09000 * 109.46579 * 339.01462 * 1 2 3 34 34 H 1.07998 * 119.92131 * 359.97438 * 6 5 4 35 35 H 1.08011 * 119.59987 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.86787 * 179.97438 * 8 7 6 37 37 H 0.96999 * 119.99900 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.49606 * 61.30339 * 15 13 12 39 39 H 1.09000 * 109.49451 * 181.40268 * 15 13 12 40 40 H 1.09004 * 109.59042 * 65.15049 * 16 15 13 41 41 H 1.09000 * 109.58882 * 185.58116 * 16 15 13 42 42 H 0.97000 * 119.99685 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.58589 * 186.60187 * 26 17 16 44 44 H 1.09001 * 109.58824 * 66.17606 * 26 17 16 45 45 H 0.96708 * 114.00029 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3026 1.1250 0.0000 4 7 3.5313 0.7437 0.0005 5 6 3.5990 -0.6087 0.0015 6 6 4.6698 -1.5124 0.0019 7 6 4.4305 -2.8674 0.0035 8 6 3.1359 -3.3590 0.0041 9 6 2.0530 -2.4840 0.0037 10 6 0.6740 -3.0084 0.0050 11 8 -0.1326 -2.5993 -0.8077 12 7 0.3084 -3.9408 0.9068 13 6 -1.0611 -4.4611 0.9083 14 1 -1.4298 -4.5162 -0.1159 15 6 -1.9595 -3.5287 1.7242 16 6 -1.4184 -3.4266 3.1537 17 7 -1.2916 -4.7809 3.7092 18 6 -1.8776 -5.1025 4.9043 19 1 -2.7618 -4.5755 5.2313 20 6 -1.3354 -6.1059 5.6956 21 7 -0.1020 -6.5149 5.4859 22 14 -2.3559 -6.8757 7.0576 23 1 -3.5722 -7.4967 6.4741 24 1 -1.5534 -7.9154 7.7502 25 1 -2.7540 -5.8270 8.0308 26 6 -0.5236 -5.7834 2.9583 27 6 -1.0747 -5.8590 1.5309 28 1 -2.0969 -6.2368 1.5547 29 8 -0.2600 -6.7365 0.7510 30 6 2.2829 -1.0988 -0.0049 31 1 -0.3633 -0.1611 -1.0149 32 1 -0.3633 -0.7984 0.6471 33 1 -0.3632 0.9595 0.3680 34 1 5.6852 -1.1446 0.0010 35 1 5.2626 -3.5561 0.0042 36 1 2.9655 -4.4254 0.0049 37 1 0.9521 -4.2674 1.5548 38 1 -1.9678 -2.5394 1.2668 39 1 -2.9734 -3.9282 1.7466 40 1 -0.4412 -2.9439 3.1410 41 1 -2.1080 -2.8442 3.7647 42 1 0.2769 -7.2163 6.0386 43 1 -0.6228 -6.7560 3.4403 44 1 0.5266 -5.4929 2.9295 45 1 -0.2221 -7.6419 1.0885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090857769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:04 Heat of formation + Delta-G solvation = 34.917852 kcal Electronic energy + Delta-G solvation = -31331.494126 eV Core-core repulsion = 27157.932633 eV Total energy + Delta-G solvation = -4173.561493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.24378 -41.28169 -39.49267 -38.30493 -36.83454 -35.80308 -35.52955 -33.80720 -32.24565 -31.37726 -31.02588 -30.39725 -28.53466 -27.23113 -25.61416 -24.20014 -23.76992 -23.60834 -23.31114 -21.44586 -20.30801 -19.35233 -18.85328 -18.46289 -18.04524 -17.68229 -17.26653 -16.87352 -16.79136 -16.51799 -16.07090 -15.77491 -15.50120 -15.40317 -15.15085 -14.90728 -14.52197 -14.40266 -14.07230 -13.81476 -13.54094 -13.49245 -13.28515 -13.17787 -13.02611 -12.90294 -12.82832 -12.67211 -12.61913 -12.26341 -12.20629 -11.98066 -11.83855 -11.73579 -11.28334 -11.03117 -10.87021 -10.57377 -10.10212 -10.02634 -9.39294 -8.70770 -7.89831 -5.34962 -0.79611 0.16165 0.88386 1.02541 1.48873 1.51066 1.56840 1.59612 2.07947 2.50088 2.53175 2.96018 3.13996 3.27252 3.40966 3.49238 3.65957 3.67803 3.82726 3.93364 4.11928 4.15254 4.19350 4.26719 4.30114 4.36903 4.46053 4.50838 4.60843 4.68913 4.70995 4.82480 4.88742 4.94415 5.05828 5.16082 5.17165 5.23016 5.31778 5.41592 5.47219 5.60450 5.62651 5.66560 6.35164 6.43868 6.80457 6.85135 7.07041 7.13279 7.80706 8.31321 9.15371 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.003215 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.405549 B = 8705.894410 C = 8763.733256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.388 5.388 3 N -0.033 5.033 4 N -0.234 5.234 5 C -0.045 4.045 6 C -0.011 4.011 7 C -0.125 4.125 8 C -0.019 4.019 9 C -0.156 4.156 10 C 0.563 3.437 11 O -0.567 6.567 12 N -0.689 5.689 13 C 0.168 3.832 14 H 0.082 0.918 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.602 5.602 18 C -0.268 4.268 19 H 0.065 0.935 20 C -0.039 4.039 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.281 1.281 26 C 0.156 3.844 27 C 0.085 3.915 28 H 0.062 0.938 29 O -0.571 6.571 30 C 0.105 3.895 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.164 0.836 37 H 0.407 0.593 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.012 0.988 41 H 0.054 0.946 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 3.698 -11.564 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.182 5.182 3 N -0.012 5.012 4 N -0.112 5.112 5 C -0.169 4.169 6 C -0.033 4.033 7 C -0.145 4.145 8 C -0.041 4.041 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.448 6.448 12 N -0.339 5.339 13 C 0.063 3.937 14 H 0.100 0.900 15 C -0.172 4.172 16 C 0.021 3.979 17 N -0.326 5.326 18 C -0.398 4.398 19 H 0.083 0.917 20 C -0.235 4.235 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.207 1.207 26 C 0.030 3.970 27 C 0.024 3.976 28 H 0.080 0.920 29 O -0.378 6.378 30 C -0.018 4.018 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.190 0.810 35 H 0.205 0.795 36 H 0.182 0.818 37 H 0.244 0.756 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.708 5.978 -12.378 14.884 hybrid contribution -0.721 -1.958 1.625 2.644 sum 4.987 4.020 -10.754 12.517 Atomic orbital electron populations 1.22239 0.71165 1.05376 1.04820 1.50213 1.08815 1.03087 1.56115 1.81547 0.94348 1.08244 1.17072 1.74767 1.11592 1.11212 1.13605 1.20384 0.93813 0.90143 1.12603 1.21086 0.98075 0.91456 0.92640 1.21418 0.97387 0.94823 1.00916 1.21803 0.91307 1.00449 0.90528 1.18895 0.94744 0.89431 1.13274 1.18202 0.87152 0.79104 0.80527 1.90748 1.53779 1.60284 1.39956 1.45952 1.13491 1.40468 1.33999 1.20787 0.81936 0.91379 0.99565 0.90024 1.22270 0.99329 0.99516 0.96059 1.20959 0.97382 0.86679 0.92880 1.44149 1.61578 1.06174 1.20729 1.19435 1.05764 1.18225 0.96367 0.91679 1.25647 0.96076 1.02032 0.99794 1.70121 1.13223 1.31618 1.42234 0.85447 0.78245 0.77974 0.79370 1.20442 1.22017 1.20715 1.21238 0.92399 0.94764 0.88623 1.22563 0.94339 0.89201 0.91490 0.91974 1.86378 1.71911 1.25072 1.54428 1.19288 0.91632 0.89569 1.01348 0.89173 0.90046 0.86722 0.81010 0.79478 0.81831 0.75648 0.90635 0.90402 0.96967 0.92731 0.93912 0.91550 0.96963 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.54 9.79 127.77 1.25 3.79 16 2 N -0.39 -11.38 4.10 -360.41 -1.48 -12.86 16 3 N -0.03 -1.01 13.72 37.02 0.51 -0.50 16 4 N -0.23 -7.06 12.40 -52.19 -0.65 -7.70 16 5 C -0.04 -1.19 7.26 39.58 0.29 -0.90 16 6 C -0.01 -0.19 10.09 22.57 0.23 0.04 16 7 C -0.12 -1.76 9.98 22.18 0.22 -1.54 16 8 C -0.02 -0.36 9.60 22.56 0.22 -0.14 16 9 C -0.16 -4.10 5.67 -20.06 -0.11 -4.21 16 10 C 0.56 16.61 6.10 86.70 0.53 17.14 16 11 O -0.57 -18.95 14.04 -4.01 -0.06 -19.00 16 12 N -0.69 -20.23 4.11 -445.59 -1.83 -22.06 16 13 C 0.17 5.21 2.47 45.02 0.11 5.32 16 14 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 15 C -0.13 -4.10 5.77 30.67 0.18 -3.92 16 16 C 0.15 5.52 6.26 86.36 0.54 6.06 16 17 N -0.60 -26.83 3.00 -699.09 -2.09 -28.92 16 18 C -0.27 -13.52 9.59 84.03 0.81 -12.71 16 19 H 0.07 3.25 7.88 -2.91 -0.02 3.23 16 20 C -0.04 -2.00 4.92 84.86 0.42 -1.59 16 21 N -0.93 -49.59 11.16 21.65 0.24 -49.35 16 22 Si 0.96 41.75 29.59 68.60 2.03 43.78 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.16 6.37 4.64 86.36 0.40 6.77 16 27 C 0.09 2.77 3.36 30.67 0.10 2.88 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 O -0.57 -16.40 13.21 -148.98 -1.97 -18.37 16 30 C 0.11 3.04 6.82 39.41 0.27 3.31 16 31 H 0.09 2.19 7.68 -2.39 -0.02 2.18 16 32 H 0.08 2.12 6.55 -2.38 -0.02 2.10 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.19 1.08 8.06 -2.90 -0.02 1.05 16 36 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.41 12.14 6.72 -92.71 -0.62 11.52 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.01 0.48 7.74 -2.39 -0.02 0.46 16 41 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 42 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 43 H 0.07 3.10 6.01 -2.39 -0.01 3.09 16 44 H 0.01 0.53 6.64 -2.39 -0.02 0.52 16 45 H 0.39 8.77 9.08 -74.05 -0.67 8.10 16 Total: -1.00 -66.83 367.83 -0.09 -66.92 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.24 Total: 27.78 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.44 Total: 20.28 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -5.30 Total: -121.39 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.02 Total: -37.37 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -66.83 -0.09 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090857769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.842 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds