Wall clock time and date at job start Wed Apr 1 2020 03:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34461 * 125.76447 * 2 1 4 4 C 1.38070 * 107.38802 * 180.15552 * 3 2 1 5 5 C 1.47352 * 126.41189 * 179.89726 * 4 3 2 6 6 O 1.34257 * 127.19743 * 131.96333 * 5 4 3 7 7 N 1.20738 * 111.94815 * 180.02562 * 6 5 4 8 8 C 1.29876 * 112.81855 * 359.69813 * 7 6 5 9 9 C 1.39935 * 127.19368 * 311.98460 * 5 4 3 10 10 C 1.46914 * 128.39547 * 359.97438 * 9 5 4 11 11 O 1.21671 * 120.00002 * 354.87667 * 10 9 5 12 12 N 1.34770 * 120.00008 * 174.87496 * 10 9 5 13 13 C 1.46507 * 120.00058 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47204 * 180.02562 * 13 12 10 15 15 C 1.53774 * 113.61547 * 274.13805 * 14 13 12 16 16 C 1.53951 * 87.02135 * 220.04440 * 15 14 13 17 17 N 1.46497 * 113.53910 * 270.81215 * 16 15 14 18 18 C 1.36935 * 120.00028 * 252.48978 * 17 16 15 19 19 H 1.08001 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31612 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46912 * 60.00174 * 22 20 18 24 24 H 1.48499 * 109.46619 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46795 * 299.99816 * 22 20 18 26 26 C 1.53776 * 113.61484 * 176.52958 * 14 13 12 27 27 C 1.41309 * 107.17895 * 359.62987 * 4 3 2 28 28 N 1.30476 * 108.05581 * 0.23099 * 27 4 3 29 29 H 1.09000 * 109.47073 * 270.27684 * 1 2 3 30 30 H 1.09000 * 109.47136 * 30.27594 * 1 2 3 31 31 H 1.09004 * 109.46691 * 150.28020 * 1 2 3 32 32 H 1.07991 * 126.30717 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.79407 * 180.31838 * 8 7 6 34 34 H 0.97004 * 120.00436 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47311 * 300.00356 * 13 12 10 36 36 H 1.09000 * 109.47002 * 60.00223 * 13 12 10 37 37 H 1.09003 * 112.84689 * 45.33415 * 14 13 12 38 38 H 1.08997 * 113.61696 * 334.56997 * 15 14 13 39 39 H 1.09003 * 113.61355 * 105.47082 * 15 14 13 40 40 H 1.08999 * 113.74203 * 139.93881 * 16 15 14 41 41 H 0.97000 * 119.99988 * 72.49550 * 17 16 15 42 42 H 0.97007 * 119.99774 * 180.02562 * 21 20 18 43 43 H 1.09006 * 113.61664 * 254.53214 * 26 14 13 44 44 H 1.08998 * 113.61475 * 25.43386 * 26 14 13 45 45 H 1.08000 * 125.96958 * 180.25561 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0911 0.0000 4 6 3.5612 0.6558 -0.0036 5 6 4.7651 1.5054 -0.0070 6 8 5.8427 1.3893 0.7852 7 7 6.6712 2.2347 0.5470 8 6 6.3145 3.0330 -0.4133 9 6 5.0240 2.6023 -0.8365 10 6 4.1737 3.1687 -1.8922 11 8 3.1327 2.6171 -2.1964 12 7 4.5468 4.2993 -2.5238 13 6 3.6991 4.8639 -3.5770 14 6 4.3473 6.1365 -4.1259 15 6 4.0007 7.4005 -3.3217 16 6 3.8909 8.1321 -4.6719 17 7 5.1571 8.7099 -5.1289 18 6 5.3429 10.0661 -5.0940 19 1 4.5562 10.7098 -4.7291 20 6 6.5426 10.6137 -5.5275 21 7 7.5011 9.8294 -5.9726 22 14 6.7963 12.4639 -5.4791 23 1 6.6672 12.9447 -4.0801 24 1 8.1511 12.7912 -5.9916 25 1 5.7725 13.1261 -6.3267 26 6 3.5761 6.7637 -5.2992 27 6 3.5317 -0.7570 0.0030 28 7 2.2830 -1.1354 0.0050 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8925 -0.5095 32 1 1.9185 2.1185 0.0004 33 1 6.8826 3.8610 -0.8109 34 1 5.3768 4.7390 -2.2816 35 1 3.5872 4.1374 -4.3818 36 1 2.7189 5.1036 -3.1650 37 1 5.4140 6.0195 -4.3173 38 1 3.0547 7.3307 -2.7847 39 1 4.8185 7.7577 -2.6959 40 1 3.0610 8.8369 -4.7229 41 1 5.8639 8.1318 -5.4563 42 1 8.3396 10.2121 -6.2752 43 1 4.0516 6.6076 -6.2676 44 1 2.5139 6.5195 -5.3039 45 1 4.3923 -1.4094 0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091162867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:36 Heat of formation + Delta-G solvation = 141.106133 kcal Electronic energy + Delta-G solvation = -28874.933374 eV Core-core repulsion = 24705.976550 eV Total energy + Delta-G solvation = -4168.956824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.11913 -41.48917 -39.74305 -38.48777 -34.78554 -34.25297 -34.01672 -33.18938 -32.51748 -30.31095 -29.78105 -27.85719 -27.06314 -25.12524 -24.77194 -23.68578 -23.16726 -21.85447 -21.42142 -21.13168 -20.42501 -18.76116 -18.31538 -17.85548 -17.51415 -17.19391 -16.23026 -15.95453 -15.84400 -15.34743 -15.07999 -14.87209 -14.72078 -14.20199 -14.09531 -13.92090 -13.51264 -13.36172 -13.28640 -13.16053 -12.97313 -12.90008 -12.32787 -11.98388 -11.86036 -11.46412 -11.25582 -11.08306 -10.86549 -10.74621 -10.54274 -10.34067 -10.23079 -10.07156 -9.92824 -9.84332 -9.73127 -9.53733 -9.08808 -8.92050 -8.59202 -7.04459 -5.84427 -3.13695 0.58958 1.53087 1.63093 1.95644 2.24016 2.71740 3.11356 3.18268 3.39798 3.44521 3.45343 3.99426 4.14902 4.30610 4.41999 4.52309 4.53660 4.69709 4.71362 4.89631 4.99011 4.99903 5.03875 5.10652 5.19669 5.26832 5.41137 5.46485 5.55659 5.55988 5.65086 5.81659 5.89814 6.05103 6.08641 6.15324 6.31685 6.33137 6.45773 6.53370 6.69338 6.84035 6.99040 7.21998 7.39943 7.64815 7.91631 8.08419 8.34651 9.45359 10.02553 10.36615 11.37803 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.001985 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.661423 B =14100.071111 C =15197.872224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 C 0.145 3.855 4 C -0.205 4.205 5 C 0.136 3.864 6 O 0.106 5.894 7 N -0.365 5.365 8 C 0.030 3.970 9 C -0.258 4.258 10 C 0.596 3.404 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.134 3.866 14 C -0.120 4.120 15 C -0.169 4.169 16 C 0.168 3.832 17 N -0.706 5.706 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.147 4.147 27 C 0.089 3.911 28 N -0.299 5.299 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 -20.281 13.253 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.141 5.141 3 C -0.006 4.006 4 C -0.218 4.218 5 C 0.069 3.931 6 O 0.046 5.954 7 N -0.069 5.069 8 C -0.150 4.150 9 C -0.266 4.266 10 C 0.382 3.618 11 O -0.417 6.417 12 N -0.365 5.365 13 C 0.011 3.989 14 C -0.139 4.139 15 C -0.210 4.210 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.187 4.187 27 C -0.098 4.098 28 N -0.119 5.119 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.201 0.799 33 H 0.217 0.783 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.293 -21.550 13.788 28.384 hybrid contribution 1.074 2.077 -0.592 2.412 sum -11.218 -19.473 13.195 26.061 Atomic orbital electron populations 1.22007 0.73202 1.05264 1.03807 1.48304 1.07251 1.03630 1.54941 1.22785 0.89475 0.93615 0.94728 1.17515 0.88443 0.91861 1.23993 1.21988 0.88310 0.93366 0.89437 1.84903 1.21154 1.42021 1.47365 1.73563 1.13090 1.02081 1.18190 1.25056 0.94407 1.00851 0.94655 1.21407 0.98094 1.02407 1.04669 1.16684 0.84542 0.80353 0.80227 1.90792 1.24440 1.60664 1.65836 1.45870 1.26165 1.25762 1.38691 1.21503 0.93621 0.94836 0.88950 1.22721 1.00335 0.92315 0.98549 1.23918 1.00594 0.96654 0.99803 1.21084 0.90322 0.91553 0.91526 1.42162 1.12462 1.04755 1.75026 1.19236 0.99006 0.83222 1.36040 0.91051 1.24767 0.96519 0.97928 1.01614 1.69646 1.05856 1.33819 1.48685 0.86244 0.76937 0.85163 0.77695 1.21211 1.21671 1.21185 1.23440 0.99307 0.98562 0.97408 1.24034 0.95398 0.93139 0.97271 1.77194 1.01574 1.07883 1.25214 0.90205 0.88840 0.88774 0.79938 0.78344 0.76312 0.91645 0.91414 0.88837 0.91430 0.91480 0.91970 0.78106 0.93359 0.91289 0.90470 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.44 59.85 0.68 1.13 16 2 N -0.36 -3.21 3.99 -67.54 -0.27 -3.48 16 3 C 0.15 1.37 9.88 -16.46 -0.16 1.20 16 4 C -0.21 -2.13 5.58 -105.08 -0.59 -2.71 16 5 C 0.14 1.48 7.39 -35.24 -0.26 1.22 16 6 O 0.11 1.18 11.17 16.65 0.19 1.36 16 7 N -0.36 -4.20 11.97 30.85 0.37 -3.83 16 8 C 0.03 0.30 11.68 -16.75 -0.20 0.11 16 9 C -0.26 -2.87 6.36 -104.12 -0.66 -3.53 16 10 C 0.60 7.30 7.80 -12.75 -0.10 7.20 16 11 O -0.54 -7.76 14.55 5.21 0.08 -7.68 16 12 N -0.71 -7.99 5.55 -61.54 -0.34 -8.33 16 13 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 14 C -0.12 -1.66 3.62 -89.81 -0.33 -1.99 16 15 C -0.17 -2.61 7.44 -25.83 -0.19 -2.80 16 16 C 0.17 3.11 4.57 -67.03 -0.31 2.80 16 17 N -0.71 -16.83 5.31 -52.55 -0.28 -17.11 16 18 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 22 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.15 -2.22 7.39 -25.92 -0.19 -2.41 16 27 C 0.09 0.85 12.02 -16.96 -0.20 0.65 16 28 N -0.30 -3.13 12.50 30.87 0.39 -2.75 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 1.46 7.80 -52.49 -0.41 1.05 16 33 H 0.20 1.44 7.77 -52.49 -0.41 1.04 16 34 H 0.40 3.89 7.72 -40.82 -0.32 3.58 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.38 9.72 7.90 -40.82 -0.32 9.40 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -33.63 389.48 -7.12 -40.75 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.04 Total: 9.66 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.77 Total: -4.67 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.59 Total: -62.10 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: 0.26 Total: -6.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.63 -7.12 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091162867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.852 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds