Wall clock time and date at job start Wed Apr 1 2020 03:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34461 * 125.76447 * 2 1 4 4 C 1.38070 * 107.38802 * 180.15552 * 3 2 1 5 5 C 1.47352 * 126.41189 * 179.89726 * 4 3 2 6 6 O 1.34257 * 127.19743 * 131.96333 * 5 4 3 7 7 N 1.20738 * 111.94815 * 180.02562 * 6 5 4 8 8 C 1.29876 * 112.81855 * 359.69813 * 7 6 5 9 9 C 1.39935 * 127.19368 * 311.98460 * 5 4 3 10 10 C 1.46914 * 128.39547 * 359.97438 * 9 5 4 11 11 O 1.21671 * 120.00002 * 354.87667 * 10 9 5 12 12 N 1.34770 * 120.00008 * 174.87496 * 10 9 5 13 13 C 1.46507 * 120.00058 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47204 * 180.02562 * 13 12 10 15 15 C 1.53774 * 113.61547 * 274.13805 * 14 13 12 16 16 C 1.53951 * 87.02135 * 220.04440 * 15 14 13 17 17 N 1.46497 * 113.53910 * 270.81215 * 16 15 14 18 18 C 1.36935 * 120.00028 * 252.48978 * 17 16 15 19 19 H 1.08001 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31612 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46912 * 60.00174 * 22 20 18 24 24 H 1.48499 * 109.46619 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46795 * 299.99816 * 22 20 18 26 26 C 1.53776 * 113.61484 * 176.52958 * 14 13 12 27 27 C 1.41309 * 107.17895 * 359.62987 * 4 3 2 28 28 N 1.30476 * 108.05581 * 0.23099 * 27 4 3 29 29 H 1.09000 * 109.47073 * 270.27684 * 1 2 3 30 30 H 1.09000 * 109.47136 * 30.27594 * 1 2 3 31 31 H 1.09004 * 109.46691 * 150.28020 * 1 2 3 32 32 H 1.07991 * 126.30717 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.79407 * 180.31838 * 8 7 6 34 34 H 0.97004 * 120.00436 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47311 * 300.00356 * 13 12 10 36 36 H 1.09000 * 109.47002 * 60.00223 * 13 12 10 37 37 H 1.09003 * 112.84689 * 45.33415 * 14 13 12 38 38 H 1.08997 * 113.61696 * 334.56997 * 15 14 13 39 39 H 1.09003 * 113.61355 * 105.47082 * 15 14 13 40 40 H 1.08999 * 113.74203 * 139.93881 * 16 15 14 41 41 H 0.97000 * 119.99988 * 72.49550 * 17 16 15 42 42 H 0.97007 * 119.99774 * 180.02562 * 21 20 18 43 43 H 1.09006 * 113.61664 * 254.53214 * 26 14 13 44 44 H 1.08998 * 113.61475 * 25.43386 * 26 14 13 45 45 H 1.08000 * 125.96958 * 180.25561 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0911 0.0000 4 6 3.5612 0.6558 -0.0036 5 6 4.7651 1.5054 -0.0070 6 8 5.8427 1.3893 0.7852 7 7 6.6712 2.2347 0.5470 8 6 6.3145 3.0330 -0.4133 9 6 5.0240 2.6023 -0.8365 10 6 4.1737 3.1687 -1.8922 11 8 3.1327 2.6171 -2.1964 12 7 4.5468 4.2993 -2.5238 13 6 3.6991 4.8639 -3.5770 14 6 4.3473 6.1365 -4.1259 15 6 4.0007 7.4005 -3.3217 16 6 3.8909 8.1321 -4.6719 17 7 5.1571 8.7099 -5.1289 18 6 5.3429 10.0661 -5.0940 19 1 4.5562 10.7098 -4.7291 20 6 6.5426 10.6137 -5.5275 21 7 7.5011 9.8294 -5.9726 22 14 6.7963 12.4639 -5.4791 23 1 6.6672 12.9447 -4.0801 24 1 8.1511 12.7912 -5.9916 25 1 5.7725 13.1261 -6.3267 26 6 3.5761 6.7637 -5.2992 27 6 3.5317 -0.7570 0.0030 28 7 2.2830 -1.1354 0.0050 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8925 -0.5095 32 1 1.9185 2.1185 0.0004 33 1 6.8826 3.8610 -0.8109 34 1 5.3768 4.7390 -2.2816 35 1 3.5872 4.1374 -4.3818 36 1 2.7189 5.1036 -3.1650 37 1 5.4140 6.0195 -4.3173 38 1 3.0547 7.3307 -2.7847 39 1 4.8185 7.7577 -2.6959 40 1 3.0610 8.8369 -4.7229 41 1 5.8639 8.1318 -5.4563 42 1 8.3396 10.2121 -6.2752 43 1 4.0516 6.6076 -6.2676 44 1 2.5139 6.5195 -5.3039 45 1 4.3923 -1.4094 0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091162867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:35 Heat of formation + Delta-G solvation = 118.477928 kcal Electronic energy + Delta-G solvation = -28875.914607 eV Core-core repulsion = 24705.976550 eV Total energy + Delta-G solvation = -4169.938056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.93730 -42.16729 -40.78324 -39.74002 -36.00059 -35.17868 -34.86456 -34.60330 -33.25909 -32.06016 -30.58305 -28.96394 -27.71245 -26.39604 -26.00774 -25.23561 -24.01724 -23.02089 -22.19357 -21.87613 -21.31505 -19.90345 -19.38334 -19.18366 -18.68344 -18.21062 -17.16374 -16.78180 -16.65604 -16.43020 -16.31247 -15.97528 -15.71126 -15.45448 -15.34471 -14.79957 -14.63316 -14.62867 -14.35681 -14.00147 -13.69096 -13.65360 -13.38057 -13.24720 -12.90247 -12.89769 -12.68664 -12.59455 -12.19126 -12.04871 -11.96980 -11.58108 -11.53710 -11.44789 -11.15301 -10.90037 -10.86503 -10.75262 -10.53239 -10.04291 -9.33720 -8.97458 -7.93860 -5.21614 -0.22707 0.79773 0.85498 1.33783 1.49081 1.51138 1.53888 1.57225 1.90243 2.20473 2.31931 2.57070 3.22824 3.38905 3.51565 3.57500 3.64065 3.75936 3.83674 3.85972 3.89689 4.16342 4.18721 4.22775 4.37032 4.39483 4.43720 4.45299 4.62419 4.70335 4.74490 4.78171 4.81237 4.84934 4.97376 5.03868 5.15316 5.30389 5.39470 5.41261 5.50017 5.57805 5.70501 5.86944 6.29880 6.50417 6.53113 7.10021 7.17132 7.35050 8.13323 8.34796 9.29042 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.001985 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.661423 B =14100.071111 C =15197.872224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.363 5.363 3 C 0.146 3.854 4 C -0.228 4.228 5 C 0.144 3.856 6 O 0.100 5.900 7 N -0.385 5.385 8 C 0.040 3.960 9 C -0.271 4.271 10 C 0.599 3.401 11 O -0.561 6.561 12 N -0.709 5.709 13 C 0.144 3.856 14 C -0.103 4.103 15 C -0.152 4.152 16 C 0.142 3.858 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.279 1.279 26 C -0.134 4.134 27 C 0.085 3.915 28 N -0.324 5.324 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.195 0.805 33 H 0.224 0.776 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.224 -20.408 13.994 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.141 5.141 3 C -0.007 4.007 4 C -0.241 4.241 5 C 0.076 3.924 6 O 0.042 5.958 7 N -0.091 5.091 8 C -0.140 4.140 9 C -0.278 4.278 10 C 0.386 3.614 11 O -0.442 6.442 12 N -0.360 5.360 13 C 0.021 3.979 14 C -0.122 4.122 15 C -0.193 4.193 16 C 0.032 3.968 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.205 1.205 26 C -0.173 4.173 27 C -0.102 4.102 28 N -0.144 5.144 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.212 0.788 33 H 0.241 0.759 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.125 0.875 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.923 -21.703 14.563 29.613 hybrid contribution 1.418 2.074 -0.800 2.636 sum -12.505 -19.629 13.763 27.039 Atomic orbital electron populations 1.22363 0.71024 1.06356 1.05400 1.48672 1.08519 1.03002 1.53876 1.23014 0.89386 0.94267 0.94026 1.17720 0.88710 0.92280 1.25405 1.22149 0.88232 0.93095 0.88905 1.84894 1.21267 1.42143 1.47514 1.73560 1.13660 1.02770 1.19156 1.25440 0.94005 1.00813 0.93729 1.21338 0.98558 1.03020 1.04933 1.16740 0.84273 0.80213 0.80172 1.90777 1.25440 1.61330 1.66602 1.45783 1.26366 1.25537 1.38269 1.21329 0.93712 0.93677 0.89145 1.22493 0.99633 0.92647 0.97412 1.23731 1.01234 0.96352 0.97942 1.21443 0.88121 0.93110 0.94148 1.42300 1.14059 1.03814 1.75659 1.19624 0.98755 0.84819 1.34130 0.90590 1.25531 0.96696 1.01943 1.02614 1.69797 1.06138 1.35285 1.50659 0.85246 0.76354 0.80521 0.77855 1.20443 1.22410 1.20486 1.23343 1.01173 0.95859 0.96961 1.24401 0.95873 0.93261 0.96617 1.77145 1.02121 1.09008 1.26128 0.88365 0.87118 0.88341 0.78783 0.75943 0.75392 0.91685 0.90599 0.90142 0.88803 0.93369 0.92307 0.79362 0.94085 0.92580 0.87453 0.77221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.44 127.77 1.46 2.10 16 2 N -0.36 -5.96 3.99 -367.59 -1.47 -7.43 16 3 C 0.15 2.57 9.88 84.25 0.83 3.40 16 4 C -0.23 -4.56 5.58 -20.16 -0.11 -4.67 16 5 C 0.14 3.01 7.39 25.08 0.19 3.20 16 6 O 0.10 2.16 11.17 69.79 0.78 2.94 16 7 N -0.38 -8.53 11.97 -56.82 -0.68 -9.21 16 8 C 0.04 0.75 11.68 86.04 1.01 1.75 16 9 C -0.27 -5.67 6.36 -19.54 -0.12 -5.79 16 10 C 0.60 13.64 7.80 86.52 0.67 14.32 16 11 O -0.56 -15.20 14.55 -4.26 -0.06 -15.26 16 12 N -0.71 -14.33 5.55 -466.84 -2.59 -16.92 16 13 C 0.14 3.10 5.50 86.38 0.47 3.58 16 14 C -0.10 -2.64 3.62 -10.27 -0.04 -2.68 16 15 C -0.15 -4.41 7.44 31.18 0.23 -4.17 16 16 C 0.14 5.10 4.57 45.58 0.21 5.30 16 17 N -0.72 -34.44 5.31 -320.18 -1.70 -36.13 16 18 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -57.78 13.06 21.65 0.28 -57.49 16 22 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 C -0.13 -3.77 7.39 31.12 0.23 -3.54 16 27 C 0.09 1.59 12.02 85.65 1.03 2.62 16 28 N -0.32 -6.54 12.50 -56.25 -0.70 -7.25 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.20 2.82 7.80 -2.91 -0.02 2.80 16 33 H 0.22 2.78 7.77 -2.91 -0.02 2.76 16 34 H 0.41 7.09 7.72 -92.71 -0.72 6.37 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.57 7.88 -2.39 -0.02 1.55 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 41 H 0.37 19.22 7.90 -92.71 -0.73 18.49 16 42 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 43 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.11 2.40 8.10 -2.39 -0.02 2.38 16 45 H 0.21 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -72.31 389.48 2.85 -69.45 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.40 Total: 30.64 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 7.36 Total: -0.47 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -6.86 Total: -134.43 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.72 Total: -12.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.31 2.85 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091162867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.932 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds