Wall clock time and date at job start Wed Apr 1 2020 04:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.36446 * 119.72745 * 2 1
4 4 N 1.37217 * 118.44952 * 359.97438 * 3 2 1
5 5 N 1.40109 * 119.99717 * 179.45436 * 4 3 2
6 6 C 1.34774 * 119.99481 * 180.27812 * 5 4 3
7 7 O 1.21273 * 120.00703 * 359.97438 * 6 5 4
8 8 C 1.50700 * 119.99496 * 180.02562 * 6 5 4
9 9 H 1.09011 * 109.47501 * 39.99926 * 8 6 5
10 10 N 1.46908 * 109.47187 * 159.99602 * 8 6 5
11 11 C 1.53001 * 109.47277 * 279.99552 * 8 6 5
12 12 C 1.53004 * 109.47314 * 174.99888 * 11 8 6
13 13 C 1.50694 * 109.46882 * 180.02562 * 12 11 8
14 14 H 1.08000 * 120.00571 * 359.97438 * 13 12 11
15 15 C 1.37882 * 119.99716 * 180.02562 * 13 12 11
16 16 N 1.31519 * 119.99966 * 180.02562 * 15 13 12
17 17 Si 1.86794 * 120.00021 * 359.97438 * 15 13 12
18 18 H 1.48506 * 109.47136 * 90.00411 * 17 15 13
19 19 H 1.48497 * 109.47348 * 210.00139 * 17 15 13
20 20 H 1.48499 * 109.47533 * 330.00239 * 17 15 13
21 21 N 1.30944 * 123.09551 * 179.71671 * 3 2 1
22 22 C 1.35379 * 121.52167 * 0.25989 * 21 3 2
23 23 C 1.39770 * 121.65221 * 180.02562 * 22 21 3
24 24 C 1.36648 * 119.66075 * 179.97438 * 23 22 21
25 25 C 1.38897 * 120.96381 * 0.04376 * 24 23 22
26 26 C 1.36765 * 120.73465 * 359.95134 * 25 24 23
27 27 C 1.39411 * 119.50663 * 0.02562 * 26 25 24
28 28 C 1.35318 * 119.72470 * 180.23653 * 2 1 3
29 29 O 1.21731 * 121.22846 * 0.02562 * 28 2 1
30 30 H 1.08998 * 109.47008 * 90.00020 * 1 2 3
31 31 H 1.08995 * 109.47204 * 210.00225 * 1 2 3
32 32 H 1.09000 * 109.46604 * 330.00182 * 1 2 3
33 33 H 0.97001 * 120.00427 * 359.73786 * 4 3 2
34 34 H 0.97000 * 119.99800 * 0.27666 * 5 4 3
35 35 H 1.00897 * 110.99511 * 296.04544 * 10 8 6
36 36 H 1.00898 * 110.99547 * 60.00039 * 10 8 6
37 37 H 1.08994 * 109.47048 * 295.00501 * 11 8 6
38 38 H 1.09008 * 109.46752 * 55.00457 * 11 8 6
39 39 H 1.09001 * 109.46974 * 300.00532 * 12 11 8
40 40 H 1.08995 * 109.46858 * 60.00284 * 12 11 8
41 41 H 0.96997 * 120.00148 * 179.97438 * 16 15 13
42 42 H 1.08004 * 120.17316 * 359.95032 * 23 22 21
43 43 H 1.07991 * 119.51494 * 180.02562 * 24 23 22
44 44 H 1.07997 * 119.63057 * 179.97438 * 25 24 23
45 45 H 1.08000 * 120.24281 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1417 1.1849 0.0000
4 7 1.4181 2.3508 -0.0005
5 7 2.0797 3.5858 0.0110
6 6 1.3690 4.7309 0.0161
7 8 0.1569 4.6924 0.0103
8 6 2.0806 6.0592 0.0280
9 1 2.9487 6.0123 -0.6297
10 7 1.1664 7.1087 -0.4422
11 6 2.5367 6.3808 1.4526
12 6 3.3663 7.6664 1.4445
13 6 3.8160 7.9828 2.8476
14 1 3.5377 7.3323 3.6635
15 6 4.5820 9.1033 3.0898
16 7 4.9749 9.3792 4.3142
17 14 5.0629 10.2289 1.6787
18 1 4.0266 11.2788 1.5078
19 1 6.3697 10.8674 1.9780
20 1 5.1745 9.4354 0.4285
21 7 3.4488 1.2618 0.0054
22 6 4.2232 0.1514 0.0062
23 6 5.6187 0.2303 0.0126
24 6 6.3609 -0.9170 0.0137
25 6 5.7490 -2.1640 0.0077
26 6 4.3858 -2.2736 0.0016
27 6 3.6041 -1.1192 0.0007
28 6 2.1360 -1.1751 -0.0049
29 8 1.5450 -2.2393 -0.0097
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8899 0.5138
32 1 -0.3632 0.8900 0.5138
33 1 0.4486 2.3200 -0.0048
34 1 3.0492 3.6166 0.0153
35 1 0.9015 6.9535 -1.4033
36 1 0.3530 7.1721 0.1515
37 1 1.6642 6.5154 2.0917
38 1 3.1434 5.5594 1.8339
39 1 4.2388 7.5318 0.8052
40 1 2.7597 8.4878 1.0631
41 1 5.5141 10.1673 4.4846
42 1 6.1079 1.1932 0.0161
43 1 7.4389 -0.8533 0.0190
44 1 6.3565 -3.0568 0.0083
45 1 3.9184 -3.2472 -0.0035
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118124200.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:11
Heat of formation + Delta-G solvation = 29.997040 kcal
Electronic energy + Delta-G solvation = -29356.821595 eV
Core-core repulsion = 25183.046719 eV
Total energy + Delta-G solvation = -4173.774876 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.08506 -40.31430 -38.91627 -38.47811 -36.08818 -35.44506 -34.78974 -32.85069
-31.89219 -31.59852 -30.60155 -29.33910 -28.17132 -26.87817 -24.60062 -23.90250
-23.41309 -22.31201 -21.19739 -20.26220 -19.43014 -19.28122 -18.19224 -17.68482
-17.08793 -16.97181 -16.68576 -16.24244 -15.74438 -15.52927 -15.18500 -15.14731
-14.78448 -14.58015 -14.17201 -14.09729 -14.01445 -13.94343 -13.70004 -13.18208
-12.92518 -12.67129 -12.48413 -12.22975 -11.97024 -11.84968 -11.50769 -11.15944
-10.95811 -10.76921 -10.68461 -10.43066 -10.21519 -10.09347 -9.79516 -9.70851
-9.42835 -9.17229 -9.06351 -8.75365 -8.49787 -7.83929 -6.02475 -4.00743
0.36648 0.62470 1.01166 1.91273 2.16423 2.29832 2.54848 3.24180
3.35133 3.42093 3.46321 3.74333 3.80800 4.19093 4.36344 4.46103
4.48180 4.55655 4.65915 4.70675 4.72938 4.97743 5.00985 5.08064
5.11951 5.18230 5.33010 5.46577 5.47857 5.71917 5.79285 5.88416
6.13766 6.17343 6.18388 6.22104 6.35462 6.44073 6.70239 6.77162
7.00417 7.17786 7.28179 7.31571 7.46027 7.49550 7.62559 7.81382
7.96928 8.53743 9.01937 9.59986 11.10958
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.012198 B = 0.002517 C = 0.002190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2294.861029 B =11122.826942 C =12782.537852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.052 3.948
2 N -0.556 5.556
3 C 0.638 3.362
4 N -0.502 5.502
5 N -0.501 5.501
6 C 0.486 3.514
7 O -0.553 6.553
8 C 0.090 3.910
9 H 0.108 0.892
10 N -0.803 5.803
11 C -0.090 4.090
12 C -0.004 4.004
13 C -0.523 4.523
14 H 0.069 0.931
15 C 0.066 3.934
16 N -0.905 5.905
17 Si 0.883 3.117
18 H -0.277 1.277
19 H -0.291 1.291
20 H -0.264 1.264
21 N -0.589 5.589
22 C 0.212 3.788
23 C -0.128 4.128
24 C -0.060 4.060
25 C -0.162 4.162
26 C -0.029 4.029
27 C -0.233 4.233
28 C 0.569 3.431
29 O -0.509 6.509
30 H 0.082 0.918
31 H 0.103 0.897
32 H 0.083 0.917
33 H 0.440 0.560
34 H 0.441 0.559
35 H 0.338 0.662
36 H 0.353 0.647
37 H 0.062 0.938
38 H 0.064 0.936
39 H 0.015 0.985
40 H 0.030 0.970
41 H 0.262 0.738
42 H 0.140 0.860
43 H 0.132 0.868
44 H 0.128 0.872
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.824 -21.786 -12.957 25.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 N -0.285 5.285
3 C 0.282 3.718
4 N -0.235 5.235
5 N -0.252 5.252
6 C 0.271 3.729
7 O -0.428 6.428
8 C -0.027 4.027
9 H 0.126 0.874
10 N -0.332 5.332
11 C -0.129 4.129
12 C -0.041 4.041
13 C -0.561 4.561
14 H 0.087 0.913
15 C -0.135 4.135
16 N -0.544 5.544
17 Si 0.710 3.290
18 H -0.203 1.203
19 H -0.217 1.217
20 H -0.188 1.188
21 N -0.324 5.324
22 C 0.099 3.901
23 C -0.149 4.149
24 C -0.080 4.080
25 C -0.181 4.181
26 C -0.048 4.048
27 C -0.240 4.240
28 C 0.363 3.637
29 O -0.383 6.383
30 H 0.101 0.899
31 H 0.122 0.878
32 H 0.101 0.899
33 H 0.287 0.713
34 H 0.285 0.715
35 H 0.151 0.849
36 H 0.167 0.833
37 H 0.081 0.919
38 H 0.083 0.917
39 H 0.034 0.966
40 H 0.048 0.952
41 H 0.072 0.928
42 H 0.158 0.842
43 H 0.150 0.850
44 H 0.146 0.854
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -3.837 -21.026 -12.713 24.868
hybrid contribution -0.877 -0.904 -0.659 1.422
sum -4.714 -21.930 -13.372 26.114
Atomic orbital electron populations
1.22171 0.77033 1.05366 1.04442 1.46198 1.09656 1.05592 1.67096
1.18424 0.86684 0.78975 0.87713 1.42761 1.07265 0.94938 1.78516
1.45487 1.09907 0.93586 1.76268 1.23486 0.89136 0.85556 0.74727
1.90684 1.14021 1.87167 1.50972 1.21932 0.96081 0.82439 1.02296
0.87424 1.59076 1.22634 1.44140 1.07324 1.21564 1.00561 1.01193
0.89549 1.19487 0.94510 0.92554 0.97579 1.21149 1.32390 1.09809
0.92743 0.91276 1.25019 0.95498 0.97525 0.95454 1.69922 1.37362
1.27421 1.19743 0.86732 0.77752 0.81160 0.83322 1.20319 1.21708
1.18809 1.68248 0.98708 1.29862 1.35621 1.18431 0.93724 0.86112
0.91866 1.20575 0.90549 0.99800 1.03949 1.21037 1.00447 0.91980
0.94500 1.20831 0.94282 0.98038 1.04944 1.20674 0.93471 0.97206
0.93475 1.20331 0.91488 0.95789 1.16412 1.18260 0.87745 0.81894
0.75775 1.90863 1.70593 1.27446 1.49424 0.89932 0.87817 0.89867
0.71264 0.71465 0.84929 0.83276 0.91941 0.91724 0.96648 0.95163
0.92787 0.84204 0.85050 0.85355 0.84943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.35 9.89 59.85 0.59 0.94 16
2 N -0.56 -5.57 3.02 -125.80 -0.38 -5.95 16
3 C 0.64 6.88 8.31 -321.18 -2.67 4.22 16
4 N -0.50 -5.05 6.20 29.98 0.19 -4.86 16
5 N -0.50 -5.52 6.26 31.22 0.20 -5.33 16
6 C 0.49 6.14 7.18 -10.99 -0.08 6.07 16
7 O -0.55 -8.06 16.09 5.56 0.09 -7.97 16
8 C 0.09 1.21 3.15 -68.86 -0.22 1.00 16
9 H 0.11 1.28 8.14 -51.92 -0.42 0.86 16
10 N -0.80 -10.71 8.44 -5.65 -0.05 -10.76 16
11 C -0.09 -1.57 4.78 -26.73 -0.13 -1.70 16
12 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16
13 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16
14 H 0.07 2.05 7.99 -52.49 -0.42 1.64 16
15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16
16 N -0.91 -27.61 13.96 55.43 0.77 -26.84 16
17 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16
18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
20 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16
21 N -0.59 -6.96 9.21 -11.59 -0.11 -7.07 16
22 C 0.21 2.47 6.63 -84.55 -0.56 1.90 16
23 C -0.13 -1.25 10.00 -39.58 -0.40 -1.65 16
24 C -0.06 -0.48 9.95 -39.91 -0.40 -0.87 16
25 C -0.16 -1.29 9.97 -39.87 -0.40 -1.69 16
26 C -0.03 -0.28 9.64 -39.68 -0.38 -0.67 16
27 C -0.23 -2.71 5.89 -104.77 -0.62 -3.33 16
28 C 0.57 6.87 7.65 -12.50 -0.10 6.77 16
29 O -0.51 -6.99 16.31 5.16 0.08 -6.90 16
30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.10 0.70 7.47 -51.93 -0.39 0.31 16
32 H 0.08 0.42 6.27 -51.93 -0.33 0.09 16
33 H 0.44 3.89 5.62 -182.59 -1.03 2.87 16
34 H 0.44 4.61 7.85 -182.59 -1.43 3.18 16
35 H 0.34 3.75 9.06 -39.29 -0.36 3.39 16
36 H 0.35 4.80 8.58 -39.29 -0.34 4.47 16
37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
38 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16
39 H 0.02 0.33 7.20 -51.93 -0.37 -0.04 16
40 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16
41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
42 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16
43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16
44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16
45 H 0.13 1.19 7.83 -52.49 -0.41 0.78 16
LS Contribution 379.90 15.07 5.73 5.73
Total: -1.00 -34.59 379.90 -11.60 -46.20
By element:
Atomic # 1 Polarization: 16.77 SS G_CDS: -7.57 Total: 9.20 kcal
Atomic # 6 Polarization: 3.76 SS G_CDS: -5.89 Total: -2.13 kcal
Atomic # 7 Polarization: -61.43 SS G_CDS: 0.62 Total: -60.81 kcal
Atomic # 8 Polarization: -15.04 SS G_CDS: 0.17 Total: -14.87 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -34.59 -11.60 -46.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118124200.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.194 kcal
(2) G-P(sol) polarization free energy of solvation -34.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds