Wall clock time and date at job start Wed Apr 1 2020 04:00:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.36446 * 119.72745 * 2 1
4 4 N 1.37217 * 118.44952 * 359.97438 * 3 2 1
5 5 N 1.40109 * 119.99717 * 179.45436 * 4 3 2
6 6 C 1.34774 * 119.99481 * 180.27812 * 5 4 3
7 7 O 1.21273 * 120.00703 * 359.97438 * 6 5 4
8 8 C 1.50700 * 119.99496 * 180.02562 * 6 5 4
9 9 H 1.09011 * 109.47501 * 39.99926 * 8 6 5
10 10 N 1.46908 * 109.47187 * 159.99602 * 8 6 5
11 11 C 1.53001 * 109.47277 * 279.99552 * 8 6 5
12 12 C 1.53004 * 109.47314 * 174.99888 * 11 8 6
13 13 C 1.50694 * 109.46882 * 180.02562 * 12 11 8
14 14 H 1.08000 * 120.00571 * 359.97438 * 13 12 11
15 15 C 1.37882 * 119.99716 * 180.02562 * 13 12 11
16 16 N 1.31519 * 119.99966 * 180.02562 * 15 13 12
17 17 Si 1.86794 * 120.00021 * 359.97438 * 15 13 12
18 18 H 1.48506 * 109.47136 * 90.00411 * 17 15 13
19 19 H 1.48497 * 109.47348 * 210.00139 * 17 15 13
20 20 H 1.48499 * 109.47533 * 330.00239 * 17 15 13
21 21 N 1.30944 * 123.09551 * 179.71671 * 3 2 1
22 22 C 1.35379 * 121.52167 * 0.25989 * 21 3 2
23 23 C 1.39770 * 121.65221 * 180.02562 * 22 21 3
24 24 C 1.36648 * 119.66075 * 179.97438 * 23 22 21
25 25 C 1.38897 * 120.96381 * 0.04376 * 24 23 22
26 26 C 1.36765 * 120.73465 * 359.95134 * 25 24 23
27 27 C 1.39411 * 119.50663 * 0.02562 * 26 25 24
28 28 C 1.35318 * 119.72470 * 180.23653 * 2 1 3
29 29 O 1.21731 * 121.22846 * 0.02562 * 28 2 1
30 30 H 1.08998 * 109.47008 * 90.00020 * 1 2 3
31 31 H 1.08995 * 109.47204 * 210.00225 * 1 2 3
32 32 H 1.09000 * 109.46604 * 330.00182 * 1 2 3
33 33 H 0.97001 * 120.00427 * 359.73786 * 4 3 2
34 34 H 0.97000 * 119.99800 * 0.27666 * 5 4 3
35 35 H 1.00897 * 110.99511 * 296.04544 * 10 8 6
36 36 H 1.00898 * 110.99547 * 60.00039 * 10 8 6
37 37 H 1.08994 * 109.47048 * 295.00501 * 11 8 6
38 38 H 1.09008 * 109.46752 * 55.00457 * 11 8 6
39 39 H 1.09001 * 109.46974 * 300.00532 * 12 11 8
40 40 H 1.08995 * 109.46858 * 60.00284 * 12 11 8
41 41 H 0.96997 * 120.00148 * 179.97438 * 16 15 13
42 42 H 1.08004 * 120.17316 * 359.95032 * 23 22 21
43 43 H 1.07991 * 119.51494 * 180.02562 * 24 23 22
44 44 H 1.07997 * 119.63057 * 179.97438 * 25 24 23
45 45 H 1.08000 * 120.24281 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1417 1.1849 0.0000
4 7 1.4181 2.3508 -0.0005
5 7 2.0797 3.5858 0.0110
6 6 1.3690 4.7309 0.0161
7 8 0.1569 4.6924 0.0103
8 6 2.0806 6.0592 0.0280
9 1 2.9487 6.0123 -0.6297
10 7 1.1664 7.1087 -0.4422
11 6 2.5367 6.3808 1.4526
12 6 3.3663 7.6664 1.4445
13 6 3.8160 7.9828 2.8476
14 1 3.5377 7.3323 3.6635
15 6 4.5820 9.1033 3.0898
16 7 4.9749 9.3792 4.3142
17 14 5.0629 10.2289 1.6787
18 1 4.0266 11.2788 1.5078
19 1 6.3697 10.8674 1.9780
20 1 5.1745 9.4354 0.4285
21 7 3.4488 1.2618 0.0054
22 6 4.2232 0.1514 0.0062
23 6 5.6187 0.2303 0.0126
24 6 6.3609 -0.9170 0.0137
25 6 5.7490 -2.1640 0.0077
26 6 4.3858 -2.2736 0.0016
27 6 3.6041 -1.1192 0.0007
28 6 2.1360 -1.1751 -0.0049
29 8 1.5450 -2.2393 -0.0097
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8899 0.5138
32 1 -0.3632 0.8900 0.5138
33 1 0.4486 2.3200 -0.0048
34 1 3.0492 3.6166 0.0153
35 1 0.9015 6.9535 -1.4033
36 1 0.3530 7.1721 0.1515
37 1 1.6642 6.5154 2.0917
38 1 3.1434 5.5594 1.8339
39 1 4.2388 7.5318 0.8052
40 1 2.7597 8.4878 1.0631
41 1 5.5141 10.1673 4.4846
42 1 6.1079 1.1932 0.0161
43 1 7.4389 -0.8533 0.0190
44 1 6.3565 -3.0568 0.0083
45 1 3.9184 -3.2472 -0.0035
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118124200.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:10
Heat of formation + Delta-G solvation = 6.503604 kcal
Electronic energy + Delta-G solvation = -29357.840347 eV
Core-core repulsion = 25183.046719 eV
Total energy + Delta-G solvation = -4174.793627 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.89360 -41.31447 -39.65492 -39.39125 -37.13103 -36.61926 -35.54293 -34.77648
-32.77535 -32.33750 -32.27612 -30.12688 -28.82103 -28.34099 -25.78498 -24.75446
-24.42281 -23.19220 -22.34284 -21.68166 -20.34545 -20.11171 -19.04137 -18.76071
-18.57930 -17.90331 -17.75009 -17.15991 -16.82579 -16.39046 -16.21498 -16.08721
-15.94628 -15.72921 -15.29392 -15.07579 -14.86450 -14.83549 -14.67370 -14.64473
-13.97918 -13.72664 -13.67170 -13.49963 -12.89500 -12.79806 -12.64421 -12.55580
-12.34988 -12.02261 -11.77630 -11.63376 -11.57760 -11.31786 -11.19066 -11.17972
-11.03217 -10.67457 -10.17644 -9.90414 -9.79761 -8.64850 -8.21112 -6.24312
-0.40744 -0.14864 0.15524 1.07394 1.30081 1.41470 1.46251 1.46644
1.59486 1.78066 2.39082 2.45225 2.98369 3.03710 3.16173 3.28718
3.56037 3.70314 3.76494 3.86015 4.04722 4.11421 4.16360 4.25567
4.28725 4.37331 4.43486 4.52660 4.72710 4.76194 4.84711 5.00778
5.08018 5.14516 5.18496 5.36097 5.45642 5.52323 5.55540 5.68334
5.70646 5.77221 5.91948 6.05397 6.23574 6.36299 6.42462 6.51691
6.76195 6.85255 7.05219 7.40335 8.95885
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.012198 B = 0.002517 C = 0.002190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2294.861029 B =11122.826942 C =12782.537852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.046 3.954
2 N -0.553 5.553
3 C 0.633 3.367
4 N -0.497 5.497
5 N -0.493 5.493
6 C 0.493 3.507
7 O -0.571 6.571
8 C 0.101 3.899
9 H 0.132 0.868
10 N -0.811 5.811
11 C -0.083 4.083
12 C 0.001 3.999
13 C -0.530 4.530
14 H 0.027 0.973
15 C 0.000 4.000
16 N -0.958 5.958
17 Si 0.954 3.046
18 H -0.273 1.273
19 H -0.291 1.291
20 H -0.236 1.236
21 N -0.600 5.600
22 C 0.189 3.811
23 C -0.139 4.139
24 C -0.053 4.053
25 C -0.152 4.152
26 C -0.043 4.043
27 C -0.254 4.254
28 C 0.562 3.438
29 O -0.536 6.536
30 H 0.099 0.901
31 H 0.101 0.899
32 H 0.100 0.900
33 H 0.446 0.554
34 H 0.445 0.555
35 H 0.353 0.647
36 H 0.350 0.650
37 H 0.045 0.955
38 H 0.067 0.933
39 H 0.028 0.972
40 H 0.031 0.969
41 H 0.264 0.736
42 H 0.147 0.853
43 H 0.164 0.836
44 H 0.159 0.841
45 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.914 -22.220 -15.355 27.166
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 N -0.281 5.281
3 C 0.276 3.724
4 N -0.231 5.231
5 N -0.244 5.244
6 C 0.278 3.722
7 O -0.448 6.448
8 C -0.017 4.017
9 H 0.149 0.851
10 N -0.341 5.341
11 C -0.121 4.121
12 C -0.036 4.036
13 C -0.568 4.568
14 H 0.046 0.954
15 C -0.196 4.196
16 N -0.599 5.599
17 Si 0.777 3.223
18 H -0.198 1.198
19 H -0.217 1.217
20 H -0.159 1.159
21 N -0.335 5.335
22 C 0.076 3.924
23 C -0.159 4.159
24 C -0.072 4.072
25 C -0.171 4.171
26 C -0.062 4.062
27 C -0.261 4.261
28 C 0.357 3.643
29 O -0.412 6.412
30 H 0.117 0.883
31 H 0.120 0.880
32 H 0.119 0.881
33 H 0.294 0.706
34 H 0.290 0.710
35 H 0.167 0.833
36 H 0.164 0.836
37 H 0.064 0.936
38 H 0.086 0.914
39 H 0.046 0.954
40 H 0.049 0.951
41 H 0.072 0.928
42 H 0.165 0.835
43 H 0.182 0.818
44 H 0.176 0.824
45 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -2.934 -21.483 -15.137 26.443
hybrid contribution -1.114 -0.882 0.175 1.432
sum -4.047 -22.365 -14.962 27.211
Atomic orbital electron populations
1.22418 0.75194 1.06116 1.05803 1.46171 1.10841 1.04861 1.66246
1.18413 0.86677 0.79237 0.88025 1.42695 1.07371 0.94299 1.78757
1.45307 1.10057 0.93772 1.75241 1.23133 0.88659 0.85667 0.74734
1.90683 1.14748 1.87396 1.51991 1.21685 0.97118 0.82942 0.99949
0.85062 1.59061 1.22605 1.44081 1.08307 1.21329 0.99321 0.99197
0.92280 1.19385 0.95450 0.94734 0.94048 1.21586 1.31741 1.08900
0.94557 0.95427 1.26037 0.95685 0.99555 0.98289 1.70092 1.38898
1.28458 1.22466 0.85604 0.77184 0.78958 0.80511 1.19804 1.21748
1.15909 1.68205 0.99261 1.30389 1.35673 1.18705 0.94595 0.86033
0.93061 1.20832 0.89984 1.01000 1.04125 1.21434 1.01999 0.91190
0.92531 1.21218 0.93704 0.99354 1.02785 1.20874 0.94440 0.96856
0.94065 1.20526 0.91542 0.96595 1.17430 1.18447 0.88206 0.82042
0.75585 1.90834 1.71122 1.28247 1.51023 0.88301 0.88010 0.88150
0.70569 0.71011 0.83267 0.83599 0.93591 0.91437 0.95415 0.95091
0.92763 0.83502 0.81831 0.82355 0.84719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.58 9.89 127.77 1.26 1.84 16
2 N -0.55 -10.95 3.02 -669.81 -2.02 -12.97 16
3 C 0.63 13.26 8.31 260.92 2.17 15.43 16
4 N -0.50 -9.40 6.20 -59.05 -0.37 -9.76 16
5 N -0.49 -10.09 6.26 -173.54 -1.09 -11.18 16
6 C 0.49 11.59 7.18 87.66 0.63 12.22 16
7 O -0.57 -15.73 16.09 -3.01 -0.05 -15.77 16
8 C 0.10 2.48 3.15 44.17 0.14 2.62 16
9 H 0.13 2.65 8.14 -2.38 -0.02 2.63 16
10 N -0.81 -19.79 8.44 -171.77 -1.45 -21.24 16
11 C -0.08 -2.80 4.78 30.60 0.15 -2.65 16
12 C 0.00 0.06 3.93 29.85 0.12 0.17 16
13 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16
14 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16
15 C 0.00 0.01 5.47 84.66 0.46 0.48 16
16 N -0.96 -59.91 13.96 21.45 0.30 -59.61 16
17 Si 0.95 43.39 27.47 68.60 1.88 45.27 16
18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16
19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16
20 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16
21 N -0.60 -13.84 9.21 -190.59 -1.76 -15.59 16
22 C 0.19 4.30 6.63 39.73 0.26 4.56 16
23 C -0.14 -2.52 10.00 22.27 0.22 -2.30 16
24 C -0.05 -0.69 9.95 22.06 0.22 -0.47 16
25 C -0.15 -2.06 9.97 22.08 0.22 -1.84 16
26 C -0.04 -0.81 9.64 22.21 0.21 -0.60 16
27 C -0.25 -5.89 5.89 -19.96 -0.12 -6.01 16
28 C 0.56 13.74 7.65 86.43 0.66 14.40 16
29 O -0.54 -15.02 16.31 -4.45 -0.07 -15.09 16
30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.10 1.35 7.47 -2.39 -0.02 1.33 16
32 H 0.10 0.89 6.27 -2.39 -0.01 0.88 16
33 H 0.45 7.27 5.62 -213.31 -1.20 6.07 16
34 H 0.44 8.55 7.85 -213.31 -1.67 6.88 16
35 H 0.35 6.88 9.06 -89.70 -0.81 6.06 16
36 H 0.35 9.00 8.58 -89.70 -0.77 8.23 16
37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16
39 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16
40 H 0.03 1.33 7.18 -2.39 -0.02 1.31 16
41 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16
42 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16
43 H 0.16 1.07 8.06 -2.92 -0.02 1.05 16
44 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16
45 H 0.13 2.39 7.83 -2.91 -0.02 2.37 16
Total: -1.00 -76.55 379.90 -1.18 -77.73
By element:
Atomic # 1 Polarization: 33.08 SS G_CDS: -3.42 Total: 29.66 kcal
Atomic # 6 Polarization: 1.70 SS G_CDS: 6.86 Total: 8.56 kcal
Atomic # 7 Polarization: -123.97 SS G_CDS: -6.38 Total: -130.35 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -0.12 Total: -30.87 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal
Total: -76.55 -1.18 -77.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118124200.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal
(2) G-P(sol) polarization free energy of solvation -76.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.504 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds