Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36089 * 126.30578 * 2 1 4 4 N 1.30063 * 110.13234 * 179.71753 * 3 2 1 5 5 C 1.35873 * 109.55822 * 0.41625 * 4 3 2 6 6 C 1.39405 * 133.51688 * 179.88363 * 5 4 3 7 7 C 1.39115 * 119.51013 * 179.68262 * 6 5 4 8 8 C 1.47683 * 119.90504 * 179.97438 * 7 6 5 9 9 O 1.21568 * 120.00083 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99953 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00126 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47674 * 180.02562 * 11 10 8 13 13 N 1.46893 * 109.47743 * 179.97438 * 12 11 10 14 14 C 1.46895 * 111.00271 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47111 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99907 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00113 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00324 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99847 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00377 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00147 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99794 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46990 * 89.99498 * 22 20 18 24 24 H 1.48498 * 109.46732 * 209.99697 * 22 20 18 25 25 H 1.48503 * 109.46918 * 329.99615 * 22 20 18 26 26 C 1.40138 * 120.19113 * 359.97176 * 7 6 5 27 27 C 1.36430 * 120.46223 * 0.04809 * 26 7 6 28 28 C 1.37798 * 126.30477 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47673 * 270.03161 * 1 2 3 30 30 H 1.09003 * 109.46597 * 30.03659 * 1 2 3 31 31 H 1.09005 * 109.46690 * 150.02546 * 1 2 3 32 32 H 1.08003 * 124.93564 * 359.96940 * 3 2 1 33 33 H 1.08000 * 120.24290 * 359.65759 * 6 5 4 34 34 H 0.96998 * 120.00076 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.46949 * 300.00100 * 11 10 8 36 36 H 1.09001 * 109.47136 * 59.99827 * 11 10 8 37 37 H 1.09006 * 109.46744 * 299.99894 * 12 11 10 38 38 H 1.09005 * 109.47014 * 59.99106 * 12 11 10 39 39 H 1.00905 * 110.99818 * 56.04175 * 13 12 11 40 40 H 1.08999 * 109.47463 * 299.99974 * 14 13 12 41 41 H 1.09005 * 109.47248 * 60.00370 * 14 13 12 42 42 H 0.96999 * 119.99771 * 0.02562 * 17 15 14 43 43 H 0.97004 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.77093 * 180.02562 * 26 7 6 45 45 H 1.08001 * 119.93074 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0967 0.0000 4 7 3.5199 0.7344 0.0060 5 6 3.6001 -0.6219 0.0010 6 6 4.6660 -1.5204 0.0017 7 6 4.4096 -2.8878 0.0020 8 6 5.5321 -3.8474 0.0022 9 8 6.6783 -3.4421 0.0025 10 7 5.2859 -5.1725 0.0030 11 6 6.3994 -6.1244 0.0037 12 6 5.8498 -7.5523 0.0039 13 7 6.9664 -8.5068 0.0040 14 6 6.4754 -9.8913 0.0048 15 6 7.6466 -10.8397 0.0043 16 8 8.7789 -10.4049 0.0028 17 7 7.4359 -12.1709 0.0054 18 6 8.5013 -13.0336 0.0043 19 1 9.5096 -12.6465 0.0031 20 6 8.2841 -14.4060 0.0060 21 7 9.3054 -15.2329 0.0045 22 14 6.5402 -15.0755 0.0090 23 1 6.0762 -15.2542 -1.3903 24 1 6.5136 -16.3842 0.7103 25 1 5.6444 -14.1203 0.7093 26 6 3.0892 -3.3572 0.0022 27 6 2.0436 -2.4808 0.0011 28 6 2.2808 -1.1105 0.0005 29 1 -0.3634 0.0006 1.0275 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9234 2.1194 -0.0005 33 1 5.6832 -1.1577 0.0016 34 1 4.3714 -5.4959 0.0038 35 1 7.0096 -5.9705 -0.8864 36 1 7.0094 -5.9694 0.8936 37 1 5.2394 -7.7065 0.8938 38 1 5.2400 -7.7070 -0.8862 39 1 7.5831 -8.3417 0.7853 40 1 5.8699 -10.0617 0.8950 41 1 5.8694 -10.0625 -0.8850 42 1 6.5304 -12.5185 0.0062 43 1 9.1537 -16.1910 0.0061 44 1 2.8979 -4.4202 0.0029 45 1 1.0293 -2.8520 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130511784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = 19.129854 kcal Electronic energy + Delta-G solvation = -27481.756357 eV Core-core repulsion = 23307.510245 eV Total energy + Delta-G solvation = -4174.246112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69864 -40.09911 -38.51959 -37.42219 -36.34802 -34.88745 -34.43038 -33.80954 -31.67736 -31.23851 -30.42181 -29.14960 -27.70158 -26.25694 -24.41848 -23.46055 -23.25615 -22.14489 -21.25566 -20.79795 -19.41025 -18.48738 -18.22263 -17.73279 -17.14615 -16.44004 -16.32509 -16.16631 -15.85106 -15.36825 -15.17983 -14.86449 -14.60992 -14.31765 -14.20099 -14.09444 -13.81931 -13.71815 -13.65003 -13.37281 -13.15107 -13.07781 -12.58794 -12.29780 -12.07357 -12.04807 -11.88557 -11.57281 -11.49630 -11.15822 -10.95494 -10.60567 -10.50797 -10.21202 -9.97736 -9.57913 -9.31756 -8.91056 -8.67142 -8.62946 -8.24052 -8.17629 -6.31109 -3.82697 0.41397 0.57278 1.98812 2.19274 2.67021 2.78901 3.01172 3.06087 3.14323 3.51655 3.71479 3.73194 3.94848 4.00212 4.09192 4.15729 4.34123 4.43021 4.46951 4.68544 4.74003 4.76381 4.80501 4.82638 4.89911 5.03719 5.15482 5.21964 5.32672 5.51350 5.56195 5.74327 5.76929 5.80943 5.83458 5.86740 5.92539 5.94690 6.14055 6.23980 6.49776 6.97622 7.23904 7.30095 7.48269 7.57657 7.99143 8.14379 8.59335 8.94899 9.41993 9.81989 10.82017 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.001393 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.969141 B =20091.653191 C =21021.538596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.496 5.496 3 C 0.259 3.741 4 N -0.486 5.486 5 C 0.034 3.966 6 C 0.010 3.990 7 C -0.146 4.146 8 C 0.563 3.437 9 O -0.532 6.532 10 N -0.724 5.724 11 C 0.120 3.880 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.070 4.070 27 C -0.115 4.115 28 C 0.066 3.934 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.217 0.783 33 H 0.146 0.854 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.354 0.646 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.134 0.866 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.396 30.166 0.834 40.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.186 5.186 3 C -0.027 4.027 4 N -0.204 5.204 5 C -0.084 4.084 6 C -0.011 4.011 7 C -0.152 4.152 8 C 0.350 3.650 9 O -0.409 6.409 10 N -0.377 5.377 11 C -0.004 4.004 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.083 4.083 15 C 0.234 3.766 16 O -0.444 6.444 17 N -0.230 5.230 18 C -0.435 4.435 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.090 4.090 27 C -0.136 4.136 28 C -0.045 4.045 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.164 0.836 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.152 0.848 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.026 31.058 0.161 39.886 hybrid contribution -3.082 -1.474 0.910 3.535 sum -28.108 29.584 1.071 40.822 Atomic orbital electron populations 1.22036 0.75699 1.04952 1.03762 1.45345 1.07555 1.05528 1.60193 1.25451 0.85026 0.93465 0.98758 1.70514 1.18274 1.10710 1.20889 1.18915 0.91868 0.90360 1.07236 1.20419 0.98573 0.89891 0.92181 1.19578 0.93203 0.93290 1.09088 1.18029 0.88476 0.82060 0.76465 1.90819 1.22169 1.78623 1.49286 1.45772 1.10372 1.05700 1.75868 1.21309 0.88648 0.86649 1.03788 1.22085 0.93769 0.91215 1.01013 1.59920 1.16852 1.01259 1.51813 1.21702 0.96600 0.88598 1.01394 1.19678 0.90075 0.82675 0.84136 1.90580 1.23668 1.76615 1.53562 1.42192 1.08216 1.05440 1.67118 1.19445 0.89229 0.86687 1.48094 0.86241 1.25036 0.97718 0.95721 0.97644 1.69621 1.29859 1.03280 1.49312 0.86665 0.84243 0.79537 0.78877 1.19603 1.20201 1.19563 1.20702 0.90930 0.99512 0.97859 1.19550 0.99865 0.88546 1.05668 1.19066 0.91272 0.89581 1.04557 0.90440 0.89063 0.89593 0.76706 0.83617 0.76671 0.89882 0.91063 0.94866 0.90408 0.82568 0.93603 0.89330 0.79701 0.91606 0.84811 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.05 11.17 59.84 0.67 0.72 16 2 N -0.50 -2.58 3.20 -123.13 -0.39 -2.97 16 3 C 0.26 1.50 12.50 -89.77 -1.12 0.38 16 4 N -0.49 -4.89 11.28 -12.06 -0.14 -5.03 16 5 C 0.03 0.35 7.22 -84.72 -0.61 -0.26 16 6 C 0.01 0.10 9.64 -38.82 -0.37 -0.27 16 7 C -0.15 -1.41 5.87 -105.00 -0.62 -2.02 16 8 C 0.56 6.56 7.76 -12.40 -0.10 6.46 16 9 O -0.53 -8.40 16.32 5.31 0.09 -8.32 16 10 N -0.72 -6.61 5.50 -61.31 -0.34 -6.94 16 11 C 0.12 1.31 5.93 -4.05 -0.02 1.29 16 12 C 0.05 0.51 5.80 -3.83 -0.02 0.49 16 13 N -0.67 -9.88 6.13 -115.06 -0.70 -10.59 16 14 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 15 C 0.45 10.09 7.82 -10.98 -0.09 10.00 16 16 O -0.56 -15.15 15.78 5.55 0.09 -15.06 16 17 N -0.59 -13.93 5.09 -10.96 -0.06 -13.98 16 18 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 19 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 22 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 26 C -0.07 -0.46 9.47 -39.52 -0.37 -0.83 16 27 C -0.12 -0.70 9.97 -39.92 -0.40 -1.10 16 28 C 0.07 0.52 6.87 -83.95 -0.58 -0.06 16 29 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.22 0.23 8.06 -52.48 -0.42 -0.19 16 33 H 0.15 1.70 7.63 -52.49 -0.40 1.30 16 34 H 0.40 2.31 6.47 -40.82 -0.26 2.05 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.35 5.52 8.43 -39.29 -0.33 5.18 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 0.48 6.36 -52.48 -0.33 0.14 16 45 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -39.30 387.32 -9.24 -48.54 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.77 Total: 11.22 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -3.91 Total: 7.80 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.85 Total: -64.46 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.30 -9.24 -48.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130511784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.670 kcal (2) G-P(sol) polarization free energy of solvation -39.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds