Wall clock time and date at job start Wed Apr 1 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36089 * 126.30578 * 2 1 4 4 N 1.30063 * 110.13234 * 179.71753 * 3 2 1 5 5 C 1.35873 * 109.55822 * 0.41625 * 4 3 2 6 6 C 1.39405 * 133.51688 * 179.88363 * 5 4 3 7 7 C 1.39115 * 119.51013 * 179.68262 * 6 5 4 8 8 C 1.47683 * 119.90504 * 179.97438 * 7 6 5 9 9 O 1.21568 * 120.00083 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99953 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00126 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47674 * 180.02562 * 11 10 8 13 13 N 1.46893 * 109.47743 * 179.97438 * 12 11 10 14 14 C 1.46895 * 111.00271 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47111 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99907 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00113 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00324 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99847 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00377 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00147 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99794 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46990 * 89.99498 * 22 20 18 24 24 H 1.48498 * 109.46732 * 209.99697 * 22 20 18 25 25 H 1.48503 * 109.46918 * 329.99615 * 22 20 18 26 26 C 1.40138 * 120.19113 * 359.97176 * 7 6 5 27 27 C 1.36430 * 120.46223 * 0.04809 * 26 7 6 28 28 C 1.37798 * 126.30477 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47673 * 270.03161 * 1 2 3 30 30 H 1.09003 * 109.46597 * 30.03659 * 1 2 3 31 31 H 1.09005 * 109.46690 * 150.02546 * 1 2 3 32 32 H 1.08003 * 124.93564 * 359.96940 * 3 2 1 33 33 H 1.08000 * 120.24290 * 359.65759 * 6 5 4 34 34 H 0.96998 * 120.00076 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.46949 * 300.00100 * 11 10 8 36 36 H 1.09001 * 109.47136 * 59.99827 * 11 10 8 37 37 H 1.09006 * 109.46744 * 299.99894 * 12 11 10 38 38 H 1.09005 * 109.47014 * 59.99106 * 12 11 10 39 39 H 1.00905 * 110.99818 * 56.04175 * 13 12 11 40 40 H 1.08999 * 109.47463 * 299.99974 * 14 13 12 41 41 H 1.09005 * 109.47248 * 60.00370 * 14 13 12 42 42 H 0.96999 * 119.99771 * 0.02562 * 17 15 14 43 43 H 0.97004 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.77093 * 180.02562 * 26 7 6 45 45 H 1.08001 * 119.93074 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0967 0.0000 4 7 3.5199 0.7344 0.0060 5 6 3.6001 -0.6219 0.0010 6 6 4.6660 -1.5204 0.0017 7 6 4.4096 -2.8878 0.0020 8 6 5.5321 -3.8474 0.0022 9 8 6.6783 -3.4421 0.0025 10 7 5.2859 -5.1725 0.0030 11 6 6.3994 -6.1244 0.0037 12 6 5.8498 -7.5523 0.0039 13 7 6.9664 -8.5068 0.0040 14 6 6.4754 -9.8913 0.0048 15 6 7.6466 -10.8397 0.0043 16 8 8.7789 -10.4049 0.0028 17 7 7.4359 -12.1709 0.0054 18 6 8.5013 -13.0336 0.0043 19 1 9.5096 -12.6465 0.0031 20 6 8.2841 -14.4060 0.0060 21 7 9.3054 -15.2329 0.0045 22 14 6.5402 -15.0755 0.0090 23 1 6.0762 -15.2542 -1.3903 24 1 6.5136 -16.3842 0.7103 25 1 5.6444 -14.1203 0.7093 26 6 3.0892 -3.3572 0.0022 27 6 2.0436 -2.4808 0.0011 28 6 2.2808 -1.1105 0.0005 29 1 -0.3634 0.0006 1.0275 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9234 2.1194 -0.0005 33 1 5.6832 -1.1577 0.0016 34 1 4.3714 -5.4959 0.0038 35 1 7.0096 -5.9705 -0.8864 36 1 7.0094 -5.9694 0.8936 37 1 5.2394 -7.7065 0.8938 38 1 5.2400 -7.7070 -0.8862 39 1 7.5831 -8.3417 0.7853 40 1 5.8699 -10.0617 0.8950 41 1 5.8694 -10.0625 -0.8850 42 1 6.5304 -12.5185 0.0062 43 1 9.1537 -16.1910 0.0061 44 1 2.8979 -4.4202 0.0029 45 1 1.0293 -2.8520 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130511784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:12 Heat of formation + Delta-G solvation = -13.434258 kcal Electronic energy + Delta-G solvation = -27483.168443 eV Core-core repulsion = 23307.510245 eV Total energy + Delta-G solvation = -4175.658198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.18944 -40.97051 -40.27951 -38.06816 -37.43430 -36.03622 -35.38237 -35.15753 -33.73492 -31.87440 -31.14627 -30.04589 -28.07386 -27.60519 -25.66639 -24.52367 -23.83282 -23.02857 -21.72897 -21.59729 -21.27717 -20.28013 -19.04516 -18.15601 -17.84261 -17.63293 -17.23729 -16.99720 -16.82514 -16.73578 -16.27111 -15.99880 -15.51691 -15.26382 -15.11405 -14.96828 -14.87113 -14.73507 -14.42160 -14.21774 -14.06105 -13.99374 -13.88965 -13.38576 -13.36781 -12.96259 -12.65659 -12.64125 -12.52316 -12.38945 -12.35617 -11.95637 -11.49580 -11.41364 -11.21102 -11.02300 -10.43888 -10.23492 -10.21977 -9.47631 -9.34891 -9.21541 -8.39575 -6.01106 -0.23896 0.03477 1.31900 1.38534 1.47287 1.67341 1.68512 1.91935 1.93772 1.98245 2.25525 2.82361 2.83997 3.16871 3.23896 3.47454 3.58358 3.74269 3.90532 3.90678 3.99701 4.13309 4.20344 4.24100 4.32067 4.41649 4.48335 4.50329 4.50672 4.62121 4.65123 4.78302 4.92550 4.96467 5.02721 5.22808 5.28153 5.29672 5.38485 5.54147 5.69084 5.90088 6.03345 6.14994 6.32914 6.50123 6.61435 6.80654 6.89949 7.17162 7.41501 7.99086 8.78273 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.001393 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.969141 B =20091.653191 C =21021.538596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.491 5.491 3 C 0.272 3.728 4 N -0.544 5.544 5 C 0.003 3.997 6 C -0.022 4.022 7 C -0.152 4.152 8 C 0.559 3.441 9 O -0.587 6.587 10 N -0.703 5.703 11 C 0.125 3.875 12 C 0.060 3.940 13 N -0.692 5.692 14 C 0.066 3.934 15 C 0.445 3.555 16 O -0.618 6.618 17 N -0.589 5.589 18 C -0.332 4.332 19 H 0.052 0.948 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.227 1.227 26 C -0.067 4.067 27 C -0.102 4.102 28 C 0.060 3.940 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.259 0.741 33 H 0.115 0.885 34 H 0.419 0.581 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.345 0.655 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.171 0.829 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.639 30.142 0.932 45.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.179 5.179 3 C -0.014 4.014 4 N -0.263 5.263 5 C -0.114 4.114 6 C -0.043 4.043 7 C -0.158 4.158 8 C 0.348 3.652 9 O -0.468 6.468 10 N -0.356 5.356 11 C 0.000 4.000 12 C -0.069 4.069 13 N -0.325 5.325 14 C -0.066 4.066 15 C 0.233 3.767 16 O -0.502 6.502 17 N -0.231 5.231 18 C -0.461 4.461 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.087 4.087 27 C -0.122 4.122 28 C -0.052 4.052 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.275 0.725 33 H 0.133 0.867 34 H 0.258 0.742 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.164 0.836 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.189 0.811 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -32.371 31.043 0.257 44.851 hybrid contribution -0.777 -1.289 0.872 1.740 sum -33.148 29.754 1.129 44.557 Atomic orbital electron populations 1.22428 0.72622 1.06866 1.05166 1.45666 1.09180 1.04350 1.58739 1.26299 0.84070 0.95234 0.95808 1.70453 1.21084 1.11026 1.23757 1.19084 0.93085 0.90855 1.08420 1.20319 0.97764 0.91224 0.94974 1.19475 0.94068 0.92077 1.10173 1.18450 0.88293 0.82990 0.75499 1.90789 1.24488 1.79592 1.51950 1.45512 1.11045 1.04504 1.74557 1.21119 0.89015 0.87902 1.01950 1.22075 0.92524 0.88854 1.03425 1.59883 1.18869 1.01741 1.52005 1.21629 0.93386 0.86969 1.04629 1.21103 0.91504 0.83018 0.81090 1.90561 1.26896 1.77621 1.55144 1.41998 1.07866 1.05482 1.67775 1.19016 0.88264 0.88317 1.50522 0.92974 1.26167 1.04167 0.95189 0.95936 1.69816 1.33609 1.03974 1.50276 0.85322 0.76873 0.79060 0.79961 1.18136 1.20188 1.14994 1.21028 0.89180 1.01501 0.96966 1.19992 1.01526 0.87472 1.03257 1.19352 0.90642 0.91065 1.04175 0.89204 0.86579 0.88414 0.72509 0.86721 0.74213 0.92410 0.92589 0.91811 0.88201 0.83592 0.89751 0.86123 0.77290 0.91165 0.81148 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.20 11.17 127.77 1.43 1.22 16 2 N -0.49 -3.74 3.20 -543.47 -1.74 -5.48 16 3 C 0.27 2.71 12.50 180.05 2.25 4.96 16 4 N -0.54 -11.37 11.28 -192.08 -2.17 -13.54 16 5 C 0.00 0.06 7.22 39.40 0.28 0.35 16 6 C -0.02 -0.54 9.64 22.76 0.22 -0.32 16 7 C -0.15 -3.00 5.87 -20.11 -0.12 -3.12 16 8 C 0.56 13.50 7.76 86.74 0.67 14.18 16 9 O -0.59 -20.33 16.32 -3.93 -0.06 -20.40 16 10 N -0.70 -11.80 5.50 -466.14 -2.57 -14.36 16 11 C 0.12 2.64 5.93 86.38 0.51 3.16 16 12 C 0.06 1.03 5.80 86.30 0.50 1.53 16 13 N -0.69 -19.17 6.13 -517.94 -3.17 -22.34 16 14 C 0.07 1.84 6.17 85.56 0.53 2.37 16 15 C 0.44 19.76 7.82 87.66 0.69 20.44 16 16 O -0.62 -34.61 15.78 -3.05 -0.05 -34.65 16 17 N -0.59 -27.30 5.09 -306.99 -1.56 -28.86 16 18 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 19 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 21 N -0.94 -56.63 13.96 21.66 0.30 -56.32 16 22 Si 0.97 37.97 27.74 68.60 1.90 39.87 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 26 C -0.07 -0.69 9.47 22.31 0.21 -0.48 16 27 C -0.10 -0.88 9.97 22.05 0.22 -0.66 16 28 C 0.06 0.83 6.87 39.00 0.27 1.10 16 29 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.10 -0.46 8.14 -2.38 -0.02 -0.48 16 32 H 0.26 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.11 3.30 7.63 -2.91 -0.02 3.27 16 34 H 0.42 3.31 6.47 -92.71 -0.60 2.71 16 35 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.35 10.60 8.43 -89.69 -0.76 9.84 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 42 H 0.39 14.62 5.76 -92.71 -0.53 14.08 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.17 0.37 6.36 -2.91 -0.02 0.35 16 45 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 Total: -1.00 -99.07 387.32 -1.01 -100.09 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.88 Total: 30.33 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 8.98 Total: 25.67 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -10.90 Total: -140.91 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.11 Total: -55.05 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -99.07 -1.01 -100.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130511784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.653 kcal (2) G-P(sol) polarization free energy of solvation -99.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds