Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46996 * 2 1 4 4 C 1.34222 * 117.00004 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00186 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47320 * 178.99955 * 6 4 3 8 8 C 1.46902 * 110.99683 * 160.79249 * 7 6 4 9 9 C 1.50690 * 109.47365 * 288.02887 * 8 7 6 10 10 H 1.08007 * 119.99954 * 356.24939 * 9 8 7 11 11 C 1.37871 * 120.00417 * 176.24428 * 9 8 7 12 12 N 1.31523 * 119.99844 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46812 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46652 * 120.00282 * 13 11 9 16 16 H 1.48496 * 109.47400 * 240.00186 * 13 11 9 17 17 C 1.46901 * 110.99994 * 284.74437 * 7 6 4 18 18 C 1.50698 * 109.47090 * 169.99986 * 17 7 6 19 19 C 1.38308 * 119.88004 * 89.99967 * 18 17 7 20 20 C 1.38034 * 120.11813 * 180.02562 * 19 18 17 21 21 C 1.39306 * 119.87842 * 359.97438 * 20 19 18 22 22 C 1.48457 * 120.11449 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67819 * 0.02696 * 22 21 20 24 24 N 1.28987 * 107.27014 * 179.97438 * 23 22 21 25 25 N 1.28724 * 108.94338 * 359.97438 * 24 23 22 26 26 H 0.97007 * 125.34140 * 180.02562 * 25 24 23 27 27 N 1.28874 * 109.31871 * 359.97438 * 25 24 23 28 28 C 1.39304 * 119.76655 * 0.25166 * 21 20 19 29 29 C 1.38029 * 119.87784 * 359.49285 * 28 21 20 30 30 H 1.09006 * 109.47193 * 59.99891 * 1 2 3 31 31 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47609 * 299.99677 * 1 2 3 33 33 H 1.08995 * 109.47198 * 240.00495 * 2 1 3 34 34 H 1.08993 * 109.46973 * 120.00000 * 2 1 3 35 35 H 1.09006 * 109.46923 * 58.99740 * 6 4 3 36 36 H 1.08998 * 109.47048 * 299.00352 * 6 4 3 37 37 H 1.08999 * 109.47489 * 48.03826 * 8 7 6 38 38 H 1.08998 * 109.46703 * 168.03246 * 8 7 6 39 39 H 0.97002 * 119.99953 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.46716 * 49.99880 * 17 7 6 41 41 H 1.08998 * 109.47263 * 290.00662 * 17 7 6 42 42 H 1.07999 * 119.94649 * 0.02562 * 19 18 17 43 43 H 1.08001 * 120.06178 * 180.02562 * 20 19 18 44 44 H 1.07996 * 120.05682 * 179.74830 * 28 21 20 45 45 H 1.08003 * 119.93841 * 180.23048 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3874 2.8607 0.0258 8 6 5.9883 4.1236 -0.4236 9 6 5.7903 4.2733 -1.9099 10 1 5.3241 3.4797 -2.4752 11 6 6.2041 5.4231 -2.5483 12 7 6.7721 6.3892 -1.8600 13 14 5.9593 5.6083 -4.3909 14 1 5.3027 4.3894 -4.9280 15 1 5.1024 6.7910 -4.6600 16 1 7.2775 5.7919 -5.0495 17 6 5.8729 2.4931 1.3627 18 6 7.3465 2.1848 1.2948 19 6 8.2714 3.1946 1.4889 20 6 9.6223 2.9179 1.4273 21 6 10.0534 1.6185 1.1694 22 6 11.5050 1.3151 1.1014 23 7 12.5130 2.1831 1.2666 24 7 13.6129 1.5230 1.1309 25 7 13.3331 0.2897 0.8905 26 1 13.9836 -0.4159 0.7487 27 7 12.0534 0.1393 0.8687 28 6 9.1175 0.6061 0.9699 29 6 7.7691 0.8928 1.0390 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5700 3.4753 0.8821 36 1 3.5994 3.4639 -0.8976 37 1 5.5111 4.9569 0.0923 38 1 7.0546 4.1192 -0.1977 39 1 7.0636 7.1981 -2.3092 40 1 5.3337 1.6141 1.7160 41 1 5.7064 3.3222 2.0504 42 1 7.9361 4.2016 1.6892 43 1 10.3437 3.7070 1.5794 44 1 9.4465 -0.4020 0.7657 45 1 7.0427 0.1079 0.8882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139095575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = 71.396406 kcal Electronic energy + Delta-G solvation = -29397.822741 eV Core-core repulsion = 25225.843076 eV Total energy + Delta-G solvation = -4171.979664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.40891 -40.11100 -39.12729 -36.94355 -35.76854 -34.34792 -33.54845 -32.58079 -31.76218 -30.90095 -30.65846 -28.08631 -27.29293 -24.88322 -24.60538 -23.16873 -23.11509 -22.18391 -21.34332 -20.72148 -19.82831 -19.15831 -17.34456 -17.10357 -16.63545 -16.54382 -16.26368 -15.99542 -15.28187 -14.92823 -14.54042 -14.40411 -14.13196 -13.91529 -13.43759 -13.32105 -13.06541 -13.00498 -12.72282 -12.61109 -12.39282 -12.18217 -11.97655 -11.87873 -11.51076 -11.42894 -11.33674 -11.19863 -11.12778 -10.85464 -10.77703 -10.68831 -10.63800 -10.55440 -10.34668 -10.01726 -9.79688 -9.26379 -8.58383 -8.42226 -8.21857 -7.42842 -6.05720 -4.06881 0.87408 1.27942 1.79430 2.23873 2.52129 2.68105 2.92926 3.30434 3.38811 3.43491 3.79094 4.09647 4.28121 4.42383 4.91500 4.91900 4.96901 5.11487 5.20239 5.24584 5.26612 5.30465 5.34091 5.43207 5.50662 5.64811 5.71024 5.73631 5.78629 5.79936 5.91615 6.01356 6.04446 6.10002 6.23074 6.34577 6.42945 6.70678 6.72562 6.74986 7.01776 7.07637 7.20902 7.26838 7.74775 7.88955 8.05849 8.17998 8.25675 8.43435 9.00460 9.57713 11.04513 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007880 B = 0.003283 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.310840 B = 8527.768453 C =11156.027234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.460 3.540 5 O -0.494 6.494 6 C 0.072 3.928 7 N -0.516 5.516 8 C 0.186 3.814 9 C -0.510 4.510 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.087 3.913 18 C -0.035 4.035 19 C -0.103 4.103 20 C -0.074 4.074 21 C -0.036 4.036 22 C 0.234 3.766 23 N -0.269 5.269 24 N -0.055 5.055 25 N -0.233 5.233 26 H 0.473 0.527 27 N -0.301 5.301 28 C -0.084 4.084 29 C -0.099 4.099 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.128 0.872 37 H -0.001 1.001 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -12.634 8.642 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.380 6.380 6 C -0.058 4.058 7 N -0.242 5.242 8 C 0.062 3.938 9 C -0.549 4.549 10 H 0.081 0.919 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.040 4.040 18 C -0.036 4.036 19 C -0.122 4.122 20 C -0.095 4.095 21 C -0.039 4.039 22 C -0.045 4.045 23 N -0.142 5.142 24 N -0.051 5.051 25 N -0.079 5.079 26 H 0.326 0.674 27 N -0.152 5.152 28 C -0.104 4.104 29 C -0.117 4.117 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.017 0.983 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.156 -12.987 8.315 15.464 hybrid contribution -0.212 0.083 -0.805 0.837 sum 0.944 -12.904 7.510 14.960 Atomic orbital electron populations 1.21791 0.93089 1.02544 1.03431 1.22894 0.94971 0.81083 1.02261 1.86523 1.25585 1.31615 1.84717 1.24232 0.79783 0.93608 0.72216 1.90599 1.60096 1.42954 1.44306 1.21538 0.90472 0.88824 1.04935 1.61744 1.02473 1.37858 1.22086 1.19992 0.95744 0.82064 0.95964 1.21162 1.39541 1.01649 0.92524 0.91855 1.24936 0.95239 0.95733 0.98320 1.69949 1.40764 1.06979 1.35710 0.86500 0.77883 0.77979 0.85453 1.19669 1.21062 1.21020 1.21130 0.91666 0.99916 0.91306 1.19891 0.95265 0.93166 0.95320 1.21076 0.92081 0.99349 0.99654 1.21060 0.96175 0.94800 0.97418 1.17179 0.84187 0.95083 1.07479 1.23827 0.96571 0.84599 0.99535 1.76102 0.94133 1.25720 1.18261 1.78876 1.21517 0.90652 1.14020 1.47695 1.05241 1.09724 1.45202 0.67364 1.74939 0.92038 1.25404 1.22822 1.21028 0.92504 0.98348 0.98503 1.20943 0.94822 0.96844 0.99118 0.91501 0.90647 0.91648 0.91474 0.91676 0.91651 0.85425 0.98319 0.93342 0.92906 0.90634 0.94525 0.85044 0.85025 0.85563 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.74 6.19 37.16 0.23 0.96 16 3 O -0.37 -5.48 10.22 -39.24 -0.40 -5.88 16 4 C 0.46 7.90 7.60 36.00 0.27 8.17 16 5 O -0.49 -9.47 14.98 -18.75 -0.28 -9.75 16 6 C 0.07 1.28 5.42 -4.98 -0.03 1.25 16 7 N -0.52 -10.51 4.01 -238.97 -0.96 -11.47 16 8 C 0.19 4.47 4.56 -4.98 -0.02 4.45 16 9 C -0.51 -13.70 8.31 -34.45 -0.29 -13.99 16 10 H 0.06 1.73 7.78 -52.48 -0.41 1.32 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.09 1.52 4.74 -4.98 -0.02 1.49 16 18 C -0.04 -0.61 4.94 -104.57 -0.52 -1.12 16 19 C -0.10 -1.76 7.83 -39.63 -0.31 -2.07 16 20 C -0.07 -1.22 9.70 -39.26 -0.38 -1.60 16 21 C -0.04 -0.57 5.88 -104.89 -0.62 -1.19 16 22 C 0.23 3.59 7.94 -156.31 -1.24 2.35 16 23 N -0.27 -4.20 12.23 32.15 0.39 -3.80 16 24 N -0.06 -0.72 13.47 60.35 0.81 0.10 16 25 N -0.23 -2.35 7.90 60.35 0.48 -1.87 16 26 H 0.47 2.24 8.96 -340.36 -3.05 -0.81 16 27 N -0.30 -3.93 12.08 32.17 0.39 -3.54 16 28 C -0.08 -1.28 9.70 -39.26 -0.38 -1.66 16 29 C -0.10 -1.60 9.68 -39.63 -0.38 -1.99 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 35 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 36 H 0.13 2.43 7.11 -51.93 -0.37 2.06 16 37 H 0.00 -0.03 8.05 -51.93 -0.42 -0.44 16 38 H 0.05 1.23 5.12 -51.93 -0.27 0.96 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.24 6.64 -51.93 -0.34 0.90 16 41 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 42 H 0.13 2.22 7.73 -52.49 -0.41 1.81 16 43 H 0.13 2.04 7.89 -52.49 -0.41 1.62 16 44 H 0.13 1.70 7.88 -52.49 -0.41 1.29 16 45 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -32.95 387.57 -10.01 -42.96 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.60 Total: 0.22 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.40 Total: -4.33 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 1.85 Total: -45.35 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.68 Total: -15.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.95 -10.01 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139095575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.359 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds