Wall clock time and date at job start Wed Apr 1 2020 03:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46996 * 2 1 4 4 C 1.34222 * 117.00004 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00186 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47320 * 178.99955 * 6 4 3 8 8 C 1.46902 * 110.99683 * 160.79249 * 7 6 4 9 9 C 1.50690 * 109.47365 * 288.02887 * 8 7 6 10 10 H 1.08007 * 119.99954 * 356.24939 * 9 8 7 11 11 C 1.37871 * 120.00417 * 176.24428 * 9 8 7 12 12 N 1.31523 * 119.99844 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46812 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46652 * 120.00282 * 13 11 9 16 16 H 1.48496 * 109.47400 * 240.00186 * 13 11 9 17 17 C 1.46901 * 110.99994 * 284.74437 * 7 6 4 18 18 C 1.50698 * 109.47090 * 169.99986 * 17 7 6 19 19 C 1.38308 * 119.88004 * 89.99967 * 18 17 7 20 20 C 1.38034 * 120.11813 * 180.02562 * 19 18 17 21 21 C 1.39306 * 119.87842 * 359.97438 * 20 19 18 22 22 C 1.48457 * 120.11449 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67819 * 0.02696 * 22 21 20 24 24 N 1.28987 * 107.27014 * 179.97438 * 23 22 21 25 25 N 1.28724 * 108.94338 * 359.97438 * 24 23 22 26 26 H 0.97007 * 125.34140 * 180.02562 * 25 24 23 27 27 N 1.28874 * 109.31871 * 359.97438 * 25 24 23 28 28 C 1.39304 * 119.76655 * 0.25166 * 21 20 19 29 29 C 1.38029 * 119.87784 * 359.49285 * 28 21 20 30 30 H 1.09006 * 109.47193 * 59.99891 * 1 2 3 31 31 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47609 * 299.99677 * 1 2 3 33 33 H 1.08995 * 109.47198 * 240.00495 * 2 1 3 34 34 H 1.08993 * 109.46973 * 120.00000 * 2 1 3 35 35 H 1.09006 * 109.46923 * 58.99740 * 6 4 3 36 36 H 1.08998 * 109.47048 * 299.00352 * 6 4 3 37 37 H 1.08999 * 109.47489 * 48.03826 * 8 7 6 38 38 H 1.08998 * 109.46703 * 168.03246 * 8 7 6 39 39 H 0.97002 * 119.99953 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.46716 * 49.99880 * 17 7 6 41 41 H 1.08998 * 109.47263 * 290.00662 * 17 7 6 42 42 H 1.07999 * 119.94649 * 0.02562 * 19 18 17 43 43 H 1.08001 * 120.06178 * 180.02562 * 20 19 18 44 44 H 1.07996 * 120.05682 * 179.74830 * 28 21 20 45 45 H 1.08003 * 119.93841 * 180.23048 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3874 2.8607 0.0258 8 6 5.9883 4.1236 -0.4236 9 6 5.7903 4.2733 -1.9099 10 1 5.3241 3.4797 -2.4752 11 6 6.2041 5.4231 -2.5483 12 7 6.7721 6.3892 -1.8600 13 14 5.9593 5.6083 -4.3909 14 1 5.3027 4.3894 -4.9280 15 1 5.1024 6.7910 -4.6600 16 1 7.2775 5.7919 -5.0495 17 6 5.8729 2.4931 1.3627 18 6 7.3465 2.1848 1.2948 19 6 8.2714 3.1946 1.4889 20 6 9.6223 2.9179 1.4273 21 6 10.0534 1.6185 1.1694 22 6 11.5050 1.3151 1.1014 23 7 12.5130 2.1831 1.2666 24 7 13.6129 1.5230 1.1309 25 7 13.3331 0.2897 0.8905 26 1 13.9836 -0.4159 0.7487 27 7 12.0534 0.1393 0.8687 28 6 9.1175 0.6061 0.9699 29 6 7.7691 0.8928 1.0390 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.5700 3.4753 0.8821 36 1 3.5994 3.4639 -0.8976 37 1 5.5111 4.9569 0.0923 38 1 7.0546 4.1192 -0.1977 39 1 7.0636 7.1981 -2.3092 40 1 5.3337 1.6141 1.7160 41 1 5.7064 3.3222 2.0504 42 1 7.9361 4.2016 1.6892 43 1 10.3437 3.7070 1.5794 44 1 9.4465 -0.4020 0.7657 45 1 7.0427 0.1079 0.8882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139095575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:37 Heat of formation + Delta-G solvation = 50.817012 kcal Electronic energy + Delta-G solvation = -29398.715130 eV Core-core repulsion = 25225.843076 eV Total energy + Delta-G solvation = -4172.872054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.45934 -41.43892 -40.41903 -38.34462 -37.15978 -35.45290 -34.84107 -34.44119 -32.70773 -32.14179 -31.92244 -29.81968 -28.73514 -26.38127 -25.71066 -24.62158 -24.16597 -23.40660 -22.75778 -21.97775 -21.29438 -20.18067 -18.70610 -18.45306 -18.13897 -17.86316 -17.54316 -17.32499 -16.74519 -16.39614 -16.14272 -15.80683 -15.38998 -15.05653 -14.78601 -14.75484 -14.34106 -14.21579 -14.05452 -13.83856 -13.58881 -13.48115 -13.34605 -13.17365 -13.01816 -12.70061 -12.56755 -12.45544 -12.42809 -12.39113 -12.30279 -12.19414 -11.96385 -11.84262 -11.77272 -11.42696 -11.33130 -11.15183 -10.55338 -9.81993 -9.50171 -9.03923 -8.14664 -6.22147 -0.28320 0.18046 0.51396 1.30223 1.32087 1.41301 1.43348 1.44161 1.55241 1.70894 2.43536 2.67131 2.81117 3.17268 3.18979 3.47195 3.84331 3.94422 3.96610 4.06716 4.09333 4.16734 4.21165 4.29749 4.39216 4.41219 4.48369 4.49621 4.60864 4.67247 4.75799 4.89132 4.95655 4.97671 5.14662 5.19171 5.24173 5.29997 5.43760 5.46782 5.53541 5.63131 5.68019 5.75722 5.98147 6.11048 6.22501 6.55333 6.91713 6.93386 7.11550 7.46261 8.95029 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007880 B = 0.003283 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.310840 B = 8527.768453 C =11156.027234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.367 6.367 4 C 0.469 3.531 5 O -0.516 6.516 6 C 0.069 3.931 7 N -0.529 5.529 8 C 0.203 3.797 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.954 3.046 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.285 1.285 17 C 0.092 3.908 18 C -0.052 4.052 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.037 4.037 22 C 0.217 3.783 23 N -0.298 5.298 24 N -0.056 5.056 25 N -0.199 5.199 26 H 0.495 0.505 27 N -0.294 5.294 28 C -0.079 4.079 29 C -0.101 4.101 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.113 0.887 37 H -0.020 1.020 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -14.414 8.380 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.284 6.284 4 C 0.312 3.688 5 O -0.404 6.404 6 C -0.060 4.060 7 N -0.254 5.254 8 C 0.078 3.922 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.780 3.220 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.211 1.211 17 C -0.035 4.035 18 C -0.053 4.053 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.041 4.041 22 C -0.063 4.063 23 N -0.170 5.170 24 N -0.051 5.051 25 N -0.050 5.050 26 H 0.354 0.646 27 N -0.147 5.147 28 C -0.099 4.099 29 C -0.119 4.119 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.131 0.869 37 H -0.002 1.002 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.857 -14.788 8.062 16.864 hybrid contribution -0.079 0.502 -0.693 0.860 sum 0.778 -14.285 7.369 16.093 Atomic orbital electron populations 1.21817 0.90384 1.04323 1.03634 1.23261 0.97056 0.79335 1.02394 1.86507 1.23991 1.33774 1.84098 1.23878 0.80468 0.92750 0.71707 1.90587 1.60822 1.43450 1.45537 1.21503 0.89249 0.89902 1.05318 1.61586 1.03916 1.35681 1.24240 1.19605 0.94962 0.83166 0.94470 1.21428 1.39070 1.01363 0.94036 0.92755 1.25665 0.95071 0.95543 1.02325 1.70048 1.41735 1.07454 1.37302 0.85569 0.77719 0.78154 0.80606 1.19299 1.20138 1.21070 1.21139 0.91930 1.00510 0.89912 1.19972 0.95184 0.93762 0.96406 1.21073 0.92579 0.99150 1.00321 1.21130 0.95928 0.95449 0.97704 1.17301 0.85066 0.94939 1.06796 1.23714 0.96333 0.85287 1.00918 1.76090 0.94696 1.26745 1.19453 1.78818 1.20720 0.91380 1.14214 1.47759 1.04935 1.09705 1.42623 0.64595 1.74888 0.92996 1.24486 1.22294 1.21211 0.91942 0.99124 0.97596 1.21048 0.95462 0.96515 0.98913 0.91630 0.88047 0.91100 0.91920 0.91058 0.89338 0.86862 1.00183 0.94837 0.92808 0.89566 0.93630 0.85745 0.84761 0.83518 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.37 -10.55 10.22 -51.34 -0.52 -11.08 16 4 C 0.47 15.85 7.60 71.23 0.54 16.39 16 5 O -0.52 -19.49 14.98 21.95 0.33 -19.16 16 6 C 0.07 2.48 5.42 85.55 0.46 2.94 16 7 N -0.53 -21.79 4.01 -909.95 -3.65 -25.43 16 8 C 0.20 10.02 4.56 85.55 0.39 10.41 16 9 C -0.52 -28.44 8.31 25.60 0.21 -28.22 16 10 H 0.05 3.01 7.78 -2.91 -0.02 2.98 16 11 C 0.01 0.71 5.46 84.65 0.46 1.17 16 12 N -0.92 -53.54 13.29 21.45 0.28 -53.26 16 13 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 C 0.09 3.21 4.74 85.56 0.41 3.61 16 18 C -0.05 -1.81 4.94 -19.83 -0.10 -1.91 16 19 C -0.11 -3.97 7.83 22.24 0.17 -3.80 16 20 C -0.08 -2.75 9.70 22.48 0.22 -2.53 16 21 C -0.04 -1.19 5.88 -20.04 -0.12 -1.31 16 22 C 0.22 6.45 7.94 137.38 1.09 7.54 16 23 N -0.30 -9.08 12.23 -52.19 -0.64 -9.72 16 24 N -0.06 -1.37 13.47 37.02 0.50 -0.88 16 25 N -0.20 -3.56 7.90 37.02 0.29 -3.27 16 26 H 0.49 3.28 8.96 -347.53 -3.12 0.16 16 27 N -0.29 -7.11 12.08 -52.13 -0.63 -7.74 16 28 C -0.08 -2.34 9.70 22.48 0.22 -2.12 16 29 C -0.10 -3.23 9.68 22.24 0.22 -3.02 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.09 2.73 8.01 -2.38 -0.02 2.71 16 36 H 0.11 4.39 7.11 -2.39 -0.02 4.37 16 37 H -0.02 -1.02 8.05 -2.39 -0.02 -1.04 16 38 H 0.03 1.76 5.12 -2.39 -0.01 1.75 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.09 2.80 6.64 -2.38 -0.02 2.78 16 41 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 42 H 0.12 4.45 7.73 -2.91 -0.02 4.42 16 43 H 0.13 4.31 7.89 -2.91 -0.02 4.29 16 44 H 0.15 3.68 7.88 -2.91 -0.02 3.66 16 45 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -70.55 387.57 1.28 -69.27 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -2.08 Total: 15.95 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.36 Total: -0.64 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.84 Total: -100.30 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.20 Total: -30.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.55 1.28 -69.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139095575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.088 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds