Wall clock time and date at job start Wed Apr 1 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28457 * 124.15772 * 2 1 4 4 C 1.32147 * 111.38889 * 180.02562 * 3 2 1 5 5 C 1.40925 * 135.41274 * 179.97438 * 4 3 2 6 6 C 1.35826 * 119.54388 * 180.02562 * 5 4 3 7 7 C 1.39476 * 121.83652 * 0.02562 * 6 5 4 8 8 C 1.36076 * 121.57550 * 359.97150 * 7 6 5 9 9 C 1.40059 * 119.46575 * 0.04556 * 8 7 6 10 10 C 1.36193 * 124.15993 * 180.02562 * 2 1 3 11 11 C 1.46421 * 126.85590 * 359.97133 * 10 2 1 12 12 O 1.21730 * 120.00585 * 92.99284 * 11 10 2 13 13 N 1.34783 * 119.99850 * 273.00084 * 11 10 2 14 14 C 1.46497 * 120.00125 * 185.28984 * 13 11 10 15 15 C 1.52998 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47217 * 180.02562 * 15 14 13 17 17 C 1.46894 * 111.00214 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47196 * 179.97438 * 17 16 15 19 19 O 1.21295 * 120.00070 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00233 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00146 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00056 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99883 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99721 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47191 * 90.00123 * 25 23 21 27 27 H 1.48499 * 109.47061 * 209.99581 * 25 23 21 28 28 H 1.48492 * 109.47332 * 329.99978 * 25 23 21 29 29 H 1.09001 * 109.47419 * 274.65341 * 1 2 3 30 30 H 1.09007 * 109.46863 * 34.65063 * 1 2 3 31 31 H 1.08997 * 109.47122 * 154.64870 * 1 2 3 32 32 H 1.08001 * 120.22998 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.08232 * 179.72008 * 6 5 4 34 34 H 1.08000 * 119.21496 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.26691 * 179.97438 * 8 7 6 36 36 H 0.97005 * 119.99974 * 5.28563 * 13 11 10 37 37 H 1.08995 * 109.47189 * 299.99965 * 14 13 11 38 38 H 1.09010 * 109.46997 * 59.99769 * 14 13 11 39 39 H 1.09003 * 109.47305 * 299.99928 * 15 14 13 40 40 H 1.08994 * 109.47166 * 60.00653 * 15 14 13 41 41 H 1.00896 * 110.99933 * 56.03932 * 16 15 14 42 42 H 1.08997 * 109.47525 * 299.99812 * 17 16 15 43 43 H 1.09003 * 109.47052 * 60.00194 * 17 16 15 44 44 H 0.96998 * 119.99829 * 0.02562 * 20 18 17 45 45 H 0.97008 * 119.99922 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0630 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6725 1.5139 -0.0012 6 6 5.8646 0.8629 -0.0022 7 6 5.9424 -0.5296 -0.0031 8 6 4.8247 -1.3058 -0.0024 9 6 3.5633 -0.6971 -0.0018 10 6 2.2297 -1.1270 -0.0005 11 6 1.7534 -2.5115 -0.0005 12 8 1.6069 -3.1049 -1.0533 13 7 1.4769 -3.1291 1.1651 14 6 1.1121 -4.5479 1.1739 15 6 0.8514 -4.9985 2.6126 16 7 0.4863 -6.4214 2.6216 17 6 0.2275 -6.8900 3.9895 18 6 -0.1438 -8.3502 3.9585 19 8 -0.1880 -8.9424 2.9009 20 7 -0.4258 -8.9983 5.1061 21 6 -0.7631 -10.3269 5.0780 22 1 -0.8024 -10.8542 4.1363 23 6 -1.0543 -10.9949 6.2611 24 7 -1.3771 -12.2685 6.2341 25 14 -0.9869 -10.0826 7.8897 26 1 -2.3190 -9.4958 8.1839 27 1 -0.6129 -11.0284 8.9718 28 1 0.0245 -8.9985 7.8083 29 1 -0.3634 0.0834 1.0243 30 1 -0.3633 0.8455 -0.5843 31 1 -0.3633 -0.9287 -0.4400 32 1 4.6425 2.5935 -0.0019 33 1 6.7776 1.4397 -0.0074 34 1 6.9130 -1.0034 -0.0042 35 1 4.9095 -2.3824 -0.0035 36 1 1.5194 -2.6341 1.9983 37 1 0.2116 -4.6952 0.5778 38 1 1.9276 -5.1353 0.7517 39 1 1.7522 -4.8512 3.2084 40 1 0.0362 -4.4113 3.0352 41 1 1.1985 -6.9803 2.1762 42 1 1.1235 -6.7554 4.5953 43 1 -0.5926 -6.3160 4.4211 44 1 -0.3901 -8.5248 5.9519 45 1 -1.5808 -12.7348 7.0600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146632178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:43 Heat of formation + Delta-G solvation = 41.485992 kcal Electronic energy + Delta-G solvation = -28080.359792 eV Core-core repulsion = 23907.083115 eV Total energy + Delta-G solvation = -4173.276677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.91191 -39.87287 -38.56370 -38.10660 -36.52685 -34.59826 -33.88444 -33.27112 -32.42107 -31.71469 -30.36643 -29.28914 -27.96904 -26.35782 -24.31233 -23.58839 -22.86047 -22.59889 -22.17242 -20.17859 -19.45839 -18.55460 -18.29537 -17.90780 -17.07006 -16.77635 -16.38083 -16.22159 -15.92291 -15.51219 -15.15002 -14.91100 -14.56191 -14.48604 -14.20118 -13.94630 -13.76640 -13.69644 -13.54401 -13.50775 -13.12788 -12.64505 -12.37117 -12.25694 -12.15670 -12.12697 -11.96718 -11.69508 -11.64595 -11.19736 -10.77339 -10.72828 -10.63830 -10.51044 -10.01604 -9.62023 -9.56745 -9.08146 -8.69654 -8.32031 -8.22238 -8.15305 -6.34952 -3.86734 0.12823 1.24861 1.51617 1.94303 2.13142 2.64322 2.98152 3.03067 3.11667 3.43355 3.64650 3.67575 3.90399 4.05954 4.14194 4.38285 4.45787 4.49909 4.65154 4.68717 4.71491 4.75447 4.77966 4.91651 4.97266 5.13011 5.16724 5.20579 5.31553 5.48745 5.58218 5.63703 5.67363 5.71473 5.83346 5.88544 5.95320 6.04769 6.16670 6.19641 6.51621 6.84039 6.92874 7.38591 7.46462 7.53301 7.58534 8.09960 8.54894 8.90641 9.37706 9.77055 10.78039 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.001605 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.869077 B =17442.747515 C =17724.194459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.217 5.217 3 N -0.285 5.285 4 C 0.058 3.942 5 C -0.077 4.077 6 C -0.099 4.099 7 C -0.125 4.125 8 C -0.065 4.065 9 C -0.123 4.123 10 C -0.026 4.026 11 C 0.594 3.406 12 O -0.511 6.511 13 N -0.712 5.712 14 C 0.118 3.882 15 C 0.049 3.951 16 N -0.665 5.665 17 C 0.050 3.950 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.589 5.589 21 C -0.307 4.307 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.404 0.596 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.355 0.645 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 30.657 -7.109 33.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.001 5.001 3 N -0.122 5.122 4 C -0.086 4.086 5 C -0.098 4.098 6 C -0.121 4.121 7 C -0.145 4.145 8 C -0.085 4.085 9 C -0.131 4.131 10 C -0.162 4.162 11 C 0.376 3.624 12 O -0.384 6.384 13 N -0.365 5.365 14 C -0.006 4.006 15 C -0.081 4.081 16 N -0.298 5.298 17 C -0.083 4.083 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.238 0.762 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.175 0.825 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.721 30.620 -8.624 32.985 hybrid contribution 1.327 0.129 2.252 2.617 sum 10.048 30.749 -6.372 32.971 Atomic orbital electron populations 1.22479 0.72170 1.06426 1.05581 1.45739 1.08273 1.01630 1.44410 1.73452 1.03523 1.10579 1.24642 1.20601 0.91036 0.92231 1.04736 1.19905 0.88498 0.99255 1.02149 1.20652 0.97326 0.94547 0.99578 1.20700 0.98300 0.93712 1.01748 1.20091 0.89679 0.99697 0.99047 1.19346 0.91629 0.93942 1.08229 1.20958 0.91372 0.88647 1.15226 1.16680 0.77636 0.83803 0.84306 1.90938 1.50364 1.66023 1.31052 1.45911 1.69406 1.12358 1.08800 1.21417 1.02199 0.79112 0.97824 1.22076 0.99818 0.91285 0.94931 1.59910 1.50747 1.01240 1.17935 1.21701 1.00821 0.96034 0.89732 1.19653 0.84464 0.87786 0.84743 1.90581 1.55990 1.68123 1.29824 1.42195 1.62733 1.11197 1.06725 1.19439 1.43314 0.83478 0.97289 0.86233 1.25047 0.97414 0.95636 0.98044 1.69621 1.45492 1.08425 1.28405 0.86663 0.78770 0.79814 0.84061 1.19583 1.20155 1.19566 0.88396 0.87439 0.88022 0.85191 0.85326 0.85546 0.85763 0.76194 0.89505 0.90733 0.94673 0.90336 0.82521 0.93529 0.89316 0.79687 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.12 59.84 0.67 1.02 16 2 N -0.22 -1.97 3.71 -63.76 -0.24 -2.21 16 3 N -0.29 -3.04 11.88 33.21 0.39 -2.64 16 4 C 0.06 0.62 7.52 -83.14 -0.63 0.00 16 5 C -0.08 -0.64 10.09 -39.43 -0.40 -1.04 16 6 C -0.10 -0.68 9.89 -39.98 -0.40 -1.07 16 7 C -0.13 -0.92 9.92 -39.90 -0.40 -1.32 16 8 C -0.06 -0.60 10.06 -39.68 -0.40 -0.99 16 9 C -0.12 -1.31 6.42 -104.93 -0.67 -1.99 16 10 C -0.03 -0.27 6.70 -81.93 -0.55 -0.82 16 11 C 0.59 6.29 6.85 -12.96 -0.09 6.20 16 12 O -0.51 -7.38 17.12 5.16 0.09 -7.30 16 13 N -0.71 -5.69 5.55 -61.70 -0.34 -6.03 16 14 C 0.12 1.11 5.94 -4.04 -0.02 1.08 16 15 C 0.05 0.46 5.80 -3.82 -0.02 0.43 16 16 N -0.66 -9.24 6.12 -115.06 -0.70 -9.94 16 17 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 18 C 0.45 9.80 7.82 -10.99 -0.09 9.72 16 19 O -0.56 -14.79 15.78 5.54 0.09 -14.71 16 20 N -0.59 -13.64 5.09 -10.96 -0.06 -13.69 16 21 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 25 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.10 0.47 7.56 -51.93 -0.39 0.08 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.40 2.27 8.46 -40.82 -0.35 1.92 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.35 5.17 8.43 -39.29 -0.33 4.84 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -37.03 390.90 -8.02 -45.06 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.93 Total: 11.69 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.27 Total: 4.29 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.17 Total: -59.13 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.18 Total: -22.00 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.03 -8.02 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146632178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds