Wall clock time and date at job start Wed Apr 1 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28457 * 124.15772 * 2 1 4 4 C 1.32147 * 111.38889 * 180.02562 * 3 2 1 5 5 C 1.40925 * 135.41274 * 179.97438 * 4 3 2 6 6 C 1.35826 * 119.54388 * 180.02562 * 5 4 3 7 7 C 1.39476 * 121.83652 * 0.02562 * 6 5 4 8 8 C 1.36076 * 121.57550 * 359.97150 * 7 6 5 9 9 C 1.40059 * 119.46575 * 0.04556 * 8 7 6 10 10 C 1.36193 * 124.15993 * 180.02562 * 2 1 3 11 11 C 1.46421 * 126.85590 * 359.97133 * 10 2 1 12 12 O 1.21730 * 120.00585 * 92.99284 * 11 10 2 13 13 N 1.34783 * 119.99850 * 273.00084 * 11 10 2 14 14 C 1.46497 * 120.00125 * 185.28984 * 13 11 10 15 15 C 1.52998 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47217 * 180.02562 * 15 14 13 17 17 C 1.46894 * 111.00214 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47196 * 179.97438 * 17 16 15 19 19 O 1.21295 * 120.00070 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00233 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00146 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00056 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99883 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99721 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47191 * 90.00123 * 25 23 21 27 27 H 1.48499 * 109.47061 * 209.99581 * 25 23 21 28 28 H 1.48492 * 109.47332 * 329.99978 * 25 23 21 29 29 H 1.09001 * 109.47419 * 274.65341 * 1 2 3 30 30 H 1.09007 * 109.46863 * 34.65063 * 1 2 3 31 31 H 1.08997 * 109.47122 * 154.64870 * 1 2 3 32 32 H 1.08001 * 120.22998 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.08232 * 179.72008 * 6 5 4 34 34 H 1.08000 * 119.21496 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.26691 * 179.97438 * 8 7 6 36 36 H 0.97005 * 119.99974 * 5.28563 * 13 11 10 37 37 H 1.08995 * 109.47189 * 299.99965 * 14 13 11 38 38 H 1.09010 * 109.46997 * 59.99769 * 14 13 11 39 39 H 1.09003 * 109.47305 * 299.99928 * 15 14 13 40 40 H 1.08994 * 109.47166 * 60.00653 * 15 14 13 41 41 H 1.00896 * 110.99933 * 56.03932 * 16 15 14 42 42 H 1.08997 * 109.47525 * 299.99812 * 17 16 15 43 43 H 1.09003 * 109.47052 * 60.00194 * 17 16 15 44 44 H 0.96998 * 119.99829 * 0.02562 * 20 18 17 45 45 H 0.97008 * 119.99922 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0630 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6725 1.5139 -0.0012 6 6 5.8646 0.8629 -0.0022 7 6 5.9424 -0.5296 -0.0031 8 6 4.8247 -1.3058 -0.0024 9 6 3.5633 -0.6971 -0.0018 10 6 2.2297 -1.1270 -0.0005 11 6 1.7534 -2.5115 -0.0005 12 8 1.6069 -3.1049 -1.0533 13 7 1.4769 -3.1291 1.1651 14 6 1.1121 -4.5479 1.1739 15 6 0.8514 -4.9985 2.6126 16 7 0.4863 -6.4214 2.6216 17 6 0.2275 -6.8900 3.9895 18 6 -0.1438 -8.3502 3.9585 19 8 -0.1880 -8.9424 2.9009 20 7 -0.4258 -8.9983 5.1061 21 6 -0.7631 -10.3269 5.0780 22 1 -0.8024 -10.8542 4.1363 23 6 -1.0543 -10.9949 6.2611 24 7 -1.3771 -12.2685 6.2341 25 14 -0.9869 -10.0826 7.8897 26 1 -2.3190 -9.4958 8.1839 27 1 -0.6129 -11.0284 8.9718 28 1 0.0245 -8.9985 7.8083 29 1 -0.3634 0.0834 1.0243 30 1 -0.3633 0.8455 -0.5843 31 1 -0.3633 -0.9287 -0.4400 32 1 4.6425 2.5935 -0.0019 33 1 6.7776 1.4397 -0.0074 34 1 6.9130 -1.0034 -0.0042 35 1 4.9095 -2.3824 -0.0035 36 1 1.5194 -2.6341 1.9983 37 1 0.2116 -4.6952 0.5778 38 1 1.9276 -5.1353 0.7517 39 1 1.7522 -4.8512 3.2084 40 1 0.0362 -4.4113 3.0352 41 1 1.1985 -6.9803 2.1762 42 1 1.1235 -6.7554 4.5953 43 1 -0.5926 -6.3160 4.4211 44 1 -0.3901 -8.5248 5.9519 45 1 -1.5808 -12.7348 7.0600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146632178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:42 Heat of formation + Delta-G solvation = 10.576093 kcal Electronic energy + Delta-G solvation = -28081.700146 eV Core-core repulsion = 23907.083115 eV Total energy + Delta-G solvation = -4174.617031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.57724 -40.73156 -40.27895 -38.69029 -37.55710 -36.05612 -35.36022 -33.86987 -33.74109 -33.05378 -31.16763 -30.17281 -28.52527 -27.77642 -25.66529 -24.49018 -23.57929 -23.29896 -22.95773 -21.29075 -20.91969 -20.28962 -19.13205 -18.50181 -17.81497 -17.75149 -17.40777 -17.25363 -16.96185 -16.73346 -16.23074 -16.08200 -15.55143 -15.29369 -15.16753 -15.11177 -14.82590 -14.69938 -14.46266 -14.23197 -14.15283 -13.93971 -13.88517 -13.41862 -12.98278 -12.81744 -12.74314 -12.66522 -12.62491 -12.44690 -12.40207 -11.97163 -11.60834 -11.50666 -11.39790 -11.25483 -10.45349 -10.37023 -10.24504 -9.69296 -9.38884 -8.80865 -8.40658 -6.02031 -0.50729 0.60749 0.82394 1.26488 1.30890 1.37123 1.40215 1.46012 1.91563 1.96626 2.24133 2.77712 2.81501 3.03648 3.15674 3.27762 3.52420 3.80184 3.90736 3.93572 4.08306 4.11647 4.16306 4.17334 4.21690 4.38411 4.45481 4.46281 4.46478 4.55267 4.59075 4.81247 4.85071 4.90540 5.05265 5.09768 5.31463 5.48201 5.52645 5.54899 5.61044 5.86998 5.96509 6.00145 6.18995 6.30286 6.59982 6.77542 6.83799 6.88768 7.40293 7.97383 8.77011 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.001605 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.869077 B =17442.747515 C =17724.194459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.213 5.213 3 N -0.300 5.300 4 C 0.035 3.965 5 C -0.090 4.090 6 C -0.095 4.095 7 C -0.117 4.117 8 C -0.091 4.091 9 C -0.141 4.141 10 C -0.042 4.042 11 C 0.603 3.397 12 O -0.557 6.557 13 N -0.691 5.691 14 C 0.124 3.876 15 C 0.059 3.941 16 N -0.689 5.689 17 C 0.065 3.935 18 C 0.445 3.555 19 O -0.616 6.616 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.419 0.581 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.347 0.653 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.391 0.609 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.856 34.460 -4.397 36.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N 0.003 4.997 3 N -0.138 5.138 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.136 4.136 8 C -0.111 4.111 9 C -0.149 4.149 10 C -0.179 4.179 11 C 0.386 3.614 12 O -0.434 6.434 13 N -0.343 5.343 14 C 0.000 4.000 15 C -0.070 4.070 16 N -0.322 5.322 17 C -0.067 4.067 18 C 0.233 3.767 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.143 0.857 36 H 0.256 0.744 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.166 0.834 42 H 0.101 0.899 43 H 0.138 0.862 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.037 34.481 -5.879 36.390 hybrid contribution 0.951 -1.059 1.252 1.896 sum 10.988 33.422 -4.627 35.485 Atomic orbital electron populations 1.22823 0.70199 1.06998 1.07516 1.46055 1.09366 1.00926 1.43347 1.73399 1.03890 1.11209 1.25292 1.21044 0.91695 0.92618 1.05454 1.20258 0.88233 1.00233 1.02301 1.21052 0.98113 0.94559 0.97909 1.21088 0.98820 0.94124 0.99600 1.20278 0.89930 1.00118 1.00785 1.19663 0.92286 0.94388 1.08596 1.20865 0.91699 0.88618 1.16698 1.16697 0.76812 0.83821 0.84103 1.90914 1.52644 1.67084 1.32757 1.45678 1.67984 1.11793 1.08842 1.21250 1.01092 0.79535 0.98093 1.22071 1.01655 0.88591 0.94732 1.59874 1.51419 1.03463 1.17422 1.21622 1.03356 0.90514 0.91186 1.21066 0.81720 0.90514 0.83359 1.90562 1.57432 1.70227 1.31854 1.42012 1.63360 1.09517 1.08276 1.19009 1.45636 0.85879 0.95466 0.92840 1.26159 0.95860 0.96493 1.02997 1.69813 1.46627 1.10947 1.30180 0.85337 0.80438 0.79165 0.76380 1.18148 1.20214 1.15112 0.85839 0.86186 0.88057 0.83544 0.82073 0.83032 0.85691 0.74369 0.91171 0.91796 0.92237 0.88274 0.83440 0.89934 0.86193 0.77350 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 11.12 127.77 1.42 1.96 16 2 N -0.21 -3.75 3.71 -355.62 -1.32 -5.07 16 3 N -0.30 -6.23 11.88 -48.86 -0.58 -6.81 16 4 C 0.04 0.73 7.52 42.07 0.32 1.05 16 5 C -0.09 -1.34 10.09 22.37 0.23 -1.12 16 6 C -0.09 -1.06 9.89 22.01 0.22 -0.84 16 7 C -0.12 -1.50 9.92 22.07 0.22 -1.28 16 8 C -0.09 -1.61 10.06 22.21 0.22 -1.39 16 9 C -0.14 -2.98 6.42 -20.07 -0.13 -3.11 16 10 C -0.04 -0.86 6.70 41.05 0.28 -0.59 16 11 C 0.60 12.72 6.85 86.37 0.59 13.31 16 12 O -0.56 -16.66 17.12 -4.44 -0.08 -16.74 16 13 N -0.69 -10.07 5.55 -467.31 -2.59 -12.67 16 14 C 0.12 2.19 5.94 86.38 0.51 2.70 16 15 C 0.06 0.90 5.80 86.30 0.50 1.40 16 16 N -0.69 -17.66 6.12 -517.95 -3.17 -20.83 16 17 C 0.07 1.75 6.17 85.56 0.53 2.28 16 18 C 0.45 19.24 7.82 87.66 0.69 19.92 16 19 O -0.62 -33.54 15.78 -3.08 -0.05 -33.59 16 20 N -0.59 -26.83 5.09 -306.98 -1.56 -28.39 16 21 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.94 -55.98 13.96 21.66 0.30 -55.68 16 25 Si 0.97 37.64 27.74 68.60 1.90 39.54 16 26 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 27 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 29 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.10 0.89 7.56 -2.39 -0.02 0.87 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.42 3.66 8.46 -92.70 -0.78 2.87 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.35 9.84 8.43 -89.70 -0.76 9.08 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.39 14.38 5.76 -92.71 -0.53 13.85 16 45 H 0.28 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -88.78 390.90 -1.31 -90.09 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -1.07 Total: 34.58 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.91 Total: 15.58 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -8.93 Total: -129.46 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.12 Total: -50.33 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.54 kcal Total: -88.78 -1.31 -90.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146632178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.665 kcal (2) G-P(sol) polarization free energy of solvation -88.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds