Wall clock time and date at job start Wed Apr 1 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28383 * 124.37345 * 2 1 4 4 C 1.31578 * 111.96451 * 179.68794 * 3 2 1 5 5 C 1.47392 * 126.81980 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99754 * 180.42790 * 5 4 3 7 7 N 1.34773 * 120.00163 * 0.42837 * 5 4 3 8 8 C 1.46497 * 119.99871 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46882 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.46929 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00043 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47045 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00512 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00004 * 179.97438 * 12 11 10 15 15 C 1.37099 * 120.00323 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99591 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99805 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00613 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99708 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47053 * 90.00329 * 19 17 15 21 21 H 1.48497 * 109.47302 * 210.00289 * 19 17 15 22 22 H 1.48503 * 109.47124 * 330.00282 * 19 17 15 23 23 C 1.46882 * 106.35169 * 0.41328 * 4 3 2 24 24 C 1.39192 * 135.55403 * 179.89787 * 23 4 3 25 25 C 1.36718 * 119.50448 * 179.67762 * 24 23 4 26 26 C 1.38898 * 120.52576 * 359.97438 * 25 24 23 27 27 C 1.36685 * 120.89508 * 0.02562 * 26 25 24 28 28 C 1.37051 * 124.36811 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47678 * 270.04084 * 1 2 3 30 30 H 1.09002 * 109.46917 * 30.04143 * 1 2 3 31 31 H 1.09006 * 109.47335 * 150.04006 * 1 2 3 32 32 H 0.97003 * 120.00095 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.47022 * 299.99628 * 8 7 5 34 34 H 1.08994 * 109.47716 * 60.00079 * 8 7 5 35 35 H 1.08995 * 109.47273 * 299.99485 * 9 8 7 36 36 H 1.09000 * 109.47222 * 60.00402 * 9 8 7 37 37 H 1.00900 * 111.00115 * 56.04839 * 10 9 8 38 38 H 1.09002 * 109.46945 * 299.99901 * 11 10 9 39 39 H 1.09000 * 109.47287 * 60.00043 * 11 10 9 40 40 H 0.97007 * 119.99548 * 0.02562 * 14 12 11 41 41 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.25029 * 359.65259 * 24 23 4 43 43 H 1.08005 * 119.73826 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.55088 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.10896 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7769 0.0066 5 6 4.5910 1.7394 0.0092 6 8 5.7393 1.3389 0.0077 7 7 4.3392 3.0634 0.0133 8 6 5.4487 4.0201 0.0153 9 6 4.8929 5.4456 0.0193 10 7 6.0054 6.4048 0.0219 11 6 5.5086 7.7873 0.0263 12 6 6.6758 8.7406 0.0296 13 8 7.8100 8.3107 0.0288 14 7 6.4594 10.0708 0.0333 15 6 7.5212 10.9381 0.0368 16 1 8.5310 10.5553 0.0361 17 6 7.2980 12.3095 0.0413 18 7 6.0692 12.7754 0.0426 19 14 8.7447 13.4912 0.0453 20 1 9.1282 13.8090 -1.3538 21 1 8.3611 14.7411 0.7494 22 1 9.8951 12.8630 0.7433 23 6 3.5758 -0.6884 0.0014 24 6 4.6166 -1.6127 0.0023 25 6 4.3298 -2.9495 0.0027 26 6 3.0120 -3.3884 0.0026 27 6 1.9755 -2.4974 0.0018 28 6 2.2386 -1.1313 0.0005 29 1 -0.3634 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5132 32 1 3.4233 3.3829 0.0142 33 1 6.0600 3.8656 0.9045 34 1 6.0588 3.8709 -0.8755 35 1 4.2819 5.5998 -0.8701 36 1 4.2826 5.5952 0.9099 37 1 6.6228 6.2447 -0.7599 38 1 4.9019 7.9582 -0.8630 39 1 4.9024 7.9527 0.9170 40 1 5.5523 10.4146 0.0344 41 1 5.9134 13.7327 0.0461 42 1 5.6429 -1.2765 0.0023 43 1 5.1344 -3.6700 0.0038 44 1 2.8035 -4.4481 0.0033 45 1 0.9557 -2.8527 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148471173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:48 Heat of formation + Delta-G solvation = 26.683329 kcal Electronic energy + Delta-G solvation = -27702.472150 eV Core-core repulsion = 23528.553581 eV Total energy + Delta-G solvation = -4173.918569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.88624 -39.58322 -38.29411 -38.19808 -36.26874 -34.38511 -34.02828 -33.68651 -31.22836 -30.99192 -30.60761 -29.60890 -27.68098 -25.95499 -24.34465 -23.78638 -22.83473 -22.37870 -21.92851 -20.24037 -19.26464 -18.35941 -17.88742 -17.63429 -16.79300 -16.52908 -16.11125 -16.01546 -15.79973 -15.65994 -15.09005 -14.61954 -14.56553 -14.46235 -14.18438 -13.93168 -13.77981 -13.50984 -13.36174 -13.31856 -13.10341 -12.46689 -12.38358 -12.32947 -11.90668 -11.62735 -11.50793 -11.45443 -11.40202 -11.30992 -11.01956 -10.39107 -10.38099 -10.34733 -10.20574 -9.49974 -9.25697 -9.18691 -8.48354 -8.39912 -8.10607 -7.95311 -6.40816 -3.81581 0.42390 0.95048 1.54153 1.87700 2.81415 3.01502 3.19150 3.27827 3.34250 3.42653 3.77718 3.91522 3.98125 4.12799 4.29767 4.47439 4.50134 4.55128 4.58220 4.72941 4.82469 4.88658 4.98361 5.01324 5.11437 5.20185 5.26932 5.28045 5.43161 5.53359 5.74985 5.79177 5.86183 5.93058 5.96867 6.02914 6.12116 6.18139 6.25316 6.28873 6.47251 7.11108 7.20102 7.47958 7.56423 7.59999 7.98389 8.07252 8.62123 9.18911 9.54984 10.06473 10.76926 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031452 B = 0.001416 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.040026 B =19765.317713 C =20622.251690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.317 5.317 3 N -0.209 5.209 4 C 0.002 3.998 5 C 0.607 3.393 6 O -0.526 6.526 7 N -0.714 5.714 8 C 0.120 3.880 9 C 0.049 3.951 10 N -0.665 5.665 11 C 0.052 3.948 12 C 0.440 3.560 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.109 4.109 24 C -0.042 4.042 25 C -0.141 4.141 26 C -0.083 4.083 27 C -0.120 4.120 28 C 0.063 3.937 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 -31.081 -1.042 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.110 5.110 3 N -0.039 5.039 4 C -0.169 4.169 5 C 0.390 3.610 6 O -0.399 6.399 7 N -0.366 5.366 8 C -0.003 4.003 9 C -0.081 4.081 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.226 3.774 13 O -0.466 6.466 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.116 4.116 24 C -0.062 4.062 25 C -0.160 4.160 26 C -0.104 4.104 27 C -0.142 4.142 28 C -0.048 4.048 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.391 -30.535 -0.364 34.658 hybrid contribution -0.523 0.576 -0.885 1.179 sum -16.913 -29.959 -1.249 34.426 Atomic orbital electron populations 1.22122 0.72904 1.05388 1.04353 1.45129 1.07200 1.00886 1.57775 1.72847 1.03812 1.14045 1.13211 1.22721 0.90169 0.92387 1.11584 1.16573 0.86355 0.81232 0.76799 1.90826 1.20481 1.78727 1.49889 1.45723 1.10964 1.05233 1.74719 1.21347 0.88538 0.86662 1.03754 1.22077 0.93852 0.91015 1.01159 1.59928 1.16846 1.01467 1.51589 1.21670 0.96699 0.88299 1.01359 1.19782 0.89896 0.83197 0.84571 1.90534 1.23526 1.77220 1.55287 1.41856 1.09722 1.04053 1.64392 1.19721 0.89082 0.86563 1.47553 0.87872 1.25257 0.97677 0.97675 0.97301 1.69608 1.19421 1.14675 1.50658 0.85852 0.80852 0.79194 0.78362 1.20431 1.20935 1.19372 1.19426 0.93066 0.91751 1.07333 1.20451 0.98979 0.91616 0.95147 1.20878 0.96820 0.95475 1.02876 1.20760 0.92227 0.99480 0.97932 1.19752 1.00143 0.88359 1.05909 1.19165 0.90517 0.90059 1.05085 0.89905 0.88390 0.88874 0.75960 0.89791 0.90986 0.94823 0.90373 0.82779 0.93700 0.89449 0.77460 0.91890 0.84223 0.85131 0.85082 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.24 59.84 0.67 0.99 16 2 N -0.32 -2.64 3.74 -65.50 -0.24 -2.88 16 3 N -0.21 -2.16 11.52 34.46 0.40 -1.77 16 4 C 0.00 0.02 7.32 -80.75 -0.59 -0.57 16 5 C 0.61 7.95 7.81 -12.54 -0.10 7.85 16 6 O -0.53 -8.36 16.40 5.27 0.09 -8.27 16 7 N -0.71 -7.87 5.55 -61.39 -0.34 -8.21 16 8 C 0.12 1.44 5.93 -4.04 -0.02 1.42 16 9 C 0.05 0.58 5.80 -3.82 -0.02 0.56 16 10 N -0.67 -10.67 6.12 -115.05 -0.70 -11.38 16 11 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 12 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 13 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 14 N -0.56 -14.34 5.29 -10.96 -0.06 -14.39 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 16 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 19 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.11 -1.22 6.34 -105.05 -0.67 -1.89 16 24 C -0.04 -0.42 9.87 -39.78 -0.39 -0.81 16 25 C -0.14 -1.02 9.98 -39.89 -0.40 -1.42 16 26 C -0.08 -0.50 9.96 -39.90 -0.40 -0.89 16 27 C -0.12 -0.78 9.94 -39.82 -0.40 -1.17 16 28 C 0.06 0.57 6.85 -84.21 -0.58 0.00 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 32 H 0.41 3.66 8.21 -40.82 -0.34 3.32 16 33 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.14 1.44 7.65 -52.49 -0.40 1.04 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 45 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -35.78 393.60 -8.36 -44.15 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.97 Total: 13.17 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -3.25 Total: 7.25 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.23 Total: -62.49 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.17 Total: -24.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.78 -8.36 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148471173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.830 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds