Wall clock time and date at job start Wed Apr 1 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28383 * 124.37345 * 2 1 4 4 C 1.31578 * 111.96451 * 179.68794 * 3 2 1 5 5 C 1.47392 * 126.81980 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99754 * 180.42790 * 5 4 3 7 7 N 1.34773 * 120.00163 * 0.42837 * 5 4 3 8 8 C 1.46497 * 119.99871 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46882 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.46929 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00043 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47045 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00512 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00004 * 179.97438 * 12 11 10 15 15 C 1.37099 * 120.00323 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99591 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99805 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00613 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99708 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47053 * 90.00329 * 19 17 15 21 21 H 1.48497 * 109.47302 * 210.00289 * 19 17 15 22 22 H 1.48503 * 109.47124 * 330.00282 * 19 17 15 23 23 C 1.46882 * 106.35169 * 0.41328 * 4 3 2 24 24 C 1.39192 * 135.55403 * 179.89787 * 23 4 3 25 25 C 1.36718 * 119.50448 * 179.67762 * 24 23 4 26 26 C 1.38898 * 120.52576 * 359.97438 * 25 24 23 27 27 C 1.36685 * 120.89508 * 0.02562 * 26 25 24 28 28 C 1.37051 * 124.36811 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47678 * 270.04084 * 1 2 3 30 30 H 1.09002 * 109.46917 * 30.04143 * 1 2 3 31 31 H 1.09006 * 109.47335 * 150.04006 * 1 2 3 32 32 H 0.97003 * 120.00095 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.47022 * 299.99628 * 8 7 5 34 34 H 1.08994 * 109.47716 * 60.00079 * 8 7 5 35 35 H 1.08995 * 109.47273 * 299.99485 * 9 8 7 36 36 H 1.09000 * 109.47222 * 60.00402 * 9 8 7 37 37 H 1.00900 * 111.00115 * 56.04839 * 10 9 8 38 38 H 1.09002 * 109.46945 * 299.99901 * 11 10 9 39 39 H 1.09000 * 109.47287 * 60.00043 * 11 10 9 40 40 H 0.97007 * 119.99548 * 0.02562 * 14 12 11 41 41 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.25029 * 359.65259 * 24 23 4 43 43 H 1.08005 * 119.73826 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.55088 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.10896 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7769 0.0066 5 6 4.5910 1.7394 0.0092 6 8 5.7393 1.3389 0.0077 7 7 4.3392 3.0634 0.0133 8 6 5.4487 4.0201 0.0153 9 6 4.8929 5.4456 0.0193 10 7 6.0054 6.4048 0.0219 11 6 5.5086 7.7873 0.0263 12 6 6.6758 8.7406 0.0296 13 8 7.8100 8.3107 0.0288 14 7 6.4594 10.0708 0.0333 15 6 7.5212 10.9381 0.0368 16 1 8.5310 10.5553 0.0361 17 6 7.2980 12.3095 0.0413 18 7 6.0692 12.7754 0.0426 19 14 8.7447 13.4912 0.0453 20 1 9.1282 13.8090 -1.3538 21 1 8.3611 14.7411 0.7494 22 1 9.8951 12.8630 0.7433 23 6 3.5758 -0.6884 0.0014 24 6 4.6166 -1.6127 0.0023 25 6 4.3298 -2.9495 0.0027 26 6 3.0120 -3.3884 0.0026 27 6 1.9755 -2.4974 0.0018 28 6 2.2386 -1.1313 0.0005 29 1 -0.3634 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5132 32 1 3.4233 3.3829 0.0142 33 1 6.0600 3.8656 0.9045 34 1 6.0588 3.8709 -0.8755 35 1 4.2819 5.5998 -0.8701 36 1 4.2826 5.5952 0.9099 37 1 6.6228 6.2447 -0.7599 38 1 4.9019 7.9582 -0.8630 39 1 4.9024 7.9527 0.9170 40 1 5.5523 10.4146 0.0344 41 1 5.9134 13.7327 0.0461 42 1 5.6429 -1.2765 0.0023 43 1 5.1344 -3.6700 0.0038 44 1 2.8035 -4.4481 0.0033 45 1 0.9557 -2.8527 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148471173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:45 Heat of formation + Delta-G solvation = -1.836073 kcal Electronic energy + Delta-G solvation = -27703.708844 eV Core-core repulsion = 23528.553581 eV Total energy + Delta-G solvation = -4175.155263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.53753 -40.59910 -40.13435 -38.76462 -37.50022 -36.00609 -35.29122 -34.59012 -33.26825 -31.54340 -31.26851 -30.68729 -28.51273 -27.39771 -25.69781 -24.73017 -23.62355 -23.08559 -22.86352 -21.10110 -21.06690 -19.92052 -19.11114 -18.26526 -17.81185 -17.46301 -17.23337 -17.02830 -16.99445 -16.53053 -16.20979 -16.17828 -15.89464 -15.35427 -15.26878 -15.08536 -14.86755 -14.77799 -14.28980 -14.06932 -13.87957 -13.56878 -13.52334 -13.32389 -12.96419 -12.91921 -12.86670 -12.61795 -12.44837 -12.40947 -12.23395 -12.11970 -12.03768 -11.50831 -11.35112 -11.03200 -10.36700 -10.25785 -10.01504 -9.79790 -9.39463 -9.00084 -8.46731 -5.95440 -0.25579 0.33856 0.81249 1.35091 1.38285 1.42270 1.55010 1.89534 2.05249 2.14902 2.30414 2.78861 2.96174 3.15992 3.20648 3.39552 3.54473 3.70795 3.87190 4.05693 4.09542 4.13309 4.31785 4.33819 4.38463 4.42026 4.44981 4.47474 4.50736 4.60914 4.65950 4.75138 4.86850 4.91241 5.00787 5.19560 5.23096 5.41233 5.44695 5.56084 5.68087 5.83342 5.95726 6.06377 6.31891 6.32269 6.60254 6.73804 7.04555 7.12764 7.56110 8.11839 8.70580 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031452 B = 0.001416 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.040026 B =19765.317713 C =20622.251690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.307 5.307 3 N -0.206 5.206 4 C -0.038 4.038 5 C 0.604 3.396 6 O -0.566 6.566 7 N -0.701 5.701 8 C 0.128 3.872 9 C 0.059 3.941 10 N -0.684 5.684 11 C 0.068 3.932 12 C 0.435 3.565 13 O -0.625 6.625 14 N -0.572 5.572 15 C -0.336 4.336 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.993 3.007 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.274 1.274 23 C -0.138 4.138 24 C -0.078 4.078 25 C -0.132 4.132 26 C -0.083 4.083 27 C -0.110 4.110 28 C 0.049 3.951 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.347 0.653 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.169 0.831 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.230 -32.592 -1.164 38.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.102 5.102 3 N -0.038 5.038 4 C -0.206 4.206 5 C 0.389 3.611 6 O -0.443 6.443 7 N -0.354 5.354 8 C 0.004 3.996 9 C -0.070 4.070 10 N -0.317 5.317 11 C -0.064 4.064 12 C 0.223 3.777 13 O -0.511 6.511 14 N -0.209 5.209 15 C -0.466 4.466 16 H 0.096 0.904 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.146 4.146 24 C -0.098 4.098 25 C -0.151 4.151 26 C -0.103 4.103 27 C -0.131 4.131 28 C -0.063 4.063 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.254 0.746 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.169 0.831 44 H 0.187 0.813 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.579 -32.036 -0.485 37.548 hybrid contribution 0.327 0.894 -0.843 1.271 sum -19.253 -31.141 -1.328 36.636 Atomic orbital electron populations 1.22600 0.70007 1.07308 1.06001 1.45637 1.08671 1.00230 1.55620 1.72763 1.03309 1.15043 1.12711 1.22501 0.90439 0.92744 1.14899 1.16842 0.86341 0.81836 0.76042 1.90787 1.22150 1.79439 1.51948 1.45558 1.11267 1.04524 1.74006 1.21156 0.88682 0.87240 1.02503 1.22045 0.92719 0.89335 1.02887 1.59891 1.18558 1.01494 1.51771 1.21531 0.93968 0.87326 1.03624 1.20911 0.91176 0.83353 0.82262 1.90504 1.26031 1.77932 1.56657 1.41912 1.09345 1.04653 1.65004 1.19678 0.88957 0.87892 1.50065 0.90413 1.26016 1.00359 0.98519 0.96197 1.69662 1.20683 1.15404 1.50240 0.84937 0.77542 0.77248 0.78655 1.19589 1.19453 1.19932 1.19727 0.94788 0.91665 1.08371 1.20464 0.98077 0.93057 0.98210 1.21220 0.98606 0.94516 1.00731 1.21222 0.91207 1.01367 0.96535 1.20254 1.02225 0.86947 1.03672 1.19493 0.89656 0.91320 1.05815 0.88315 0.87535 0.86040 0.74600 0.91660 0.91834 0.92525 0.88905 0.83431 0.90908 0.87312 0.76854 0.91269 0.86325 0.83077 0.81338 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.24 127.77 1.44 1.73 16 2 N -0.31 -4.61 3.74 -361.14 -1.35 -5.96 16 3 N -0.21 -4.19 11.52 -44.88 -0.52 -4.71 16 4 C -0.04 -0.96 7.32 43.86 0.32 -0.63 16 5 C 0.60 17.01 7.81 86.65 0.68 17.68 16 6 O -0.57 -19.78 16.40 -4.06 -0.07 -19.85 16 7 N -0.70 -15.88 5.55 -466.41 -2.59 -18.47 16 8 C 0.13 3.15 5.93 86.38 0.51 3.67 16 9 C 0.06 1.33 5.80 86.30 0.50 1.83 16 10 N -0.68 -21.58 6.12 -517.92 -3.17 -24.75 16 11 C 0.07 2.27 6.17 85.56 0.53 2.80 16 12 C 0.44 20.89 7.82 87.66 0.69 21.58 16 13 O -0.62 -35.35 15.78 -3.07 -0.05 -35.40 16 14 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 15 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 19 Si 0.99 43.31 29.55 68.60 2.03 45.33 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.14 -3.24 6.34 -20.14 -0.13 -3.37 16 24 C -0.08 -1.66 9.87 22.14 0.22 -1.44 16 25 C -0.13 -1.78 9.98 22.07 0.22 -1.56 16 26 C -0.08 -0.73 9.96 22.06 0.22 -0.51 16 27 C -0.11 -1.06 9.94 22.12 0.22 -0.84 16 28 C 0.05 0.82 6.85 39.18 0.27 1.09 16 29 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.12 -0.22 8.09 -2.38 -0.02 -0.24 16 32 H 0.42 7.36 8.21 -92.71 -0.76 6.59 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.35 11.60 8.43 -89.69 -0.76 10.84 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.40 19.26 7.90 -92.70 -0.73 18.53 16 41 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.12 2.87 7.65 -2.91 -0.02 2.84 16 43 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 44 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 45 H 0.16 0.29 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -81.85 393.60 -1.28 -83.14 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -1.19 Total: 37.71 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.96 Total: 23.39 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -8.97 Total: -134.32 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.11 Total: -55.24 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -81.85 -1.28 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148471173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.300 kcal (2) G-P(sol) polarization free energy of solvation -81.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds