Wall clock time and date at job start Wed Apr 1 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47018 * 2 1 4 4 C 1.36931 * 120.00227 * 276.09751 * 3 2 1 5 5 H 1.08003 * 120.00360 * 32.98178 * 4 3 2 6 6 C 1.38811 * 119.99949 * 212.98988 * 4 3 2 7 7 N 1.31616 * 119.99956 * 18.49099 * 6 4 3 8 8 Si 1.86804 * 119.99701 * 198.49175 * 6 4 3 9 9 H 1.48498 * 109.47073 * 60.00148 * 8 6 4 10 10 H 1.48502 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47589 * 299.99931 * 8 6 4 12 12 C 1.46503 * 119.99633 * 96.09760 * 3 2 1 13 13 H 1.09003 * 109.46597 * 176.04112 * 12 3 2 14 14 C 1.52996 * 109.47221 * 56.03828 * 12 3 2 15 15 C 1.53003 * 109.47120 * 296.03365 * 12 3 2 16 16 N 1.46499 * 109.46974 * 305.00277 * 15 12 3 17 17 C 1.34784 * 119.99608 * 179.97438 * 16 15 12 18 18 O 1.21607 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.47345 * 119.99838 * 179.97438 * 17 16 15 20 20 C 1.39196 * 120.76691 * 89.72524 * 19 17 16 21 21 F 1.35103 * 119.70410 * 359.97438 * 20 19 17 22 22 C 1.39285 * 120.58458 * 179.74203 * 20 19 17 23 23 C 1.36018 * 121.82453 * 0.52146 * 22 20 19 24 24 C 1.40364 * 120.53866 * 359.76841 * 23 22 20 25 25 C 1.40646 * 122.23376 * 179.97438 * 24 23 22 26 26 C 1.36300 * 118.64651 * 180.02562 * 25 24 23 27 27 N 1.32486 * 121.90181 * 359.97438 * 26 25 24 28 28 C 1.31379 * 122.67788 * 359.97438 * 27 26 25 29 29 C 1.39987 * 119.84396 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47287 * 299.99902 * 1 2 3 31 31 H 1.09003 * 109.47132 * 59.99674 * 1 2 3 32 32 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46944 * 239.99744 * 2 1 3 34 34 H 1.08998 * 109.46751 * 120.00097 * 2 1 3 35 35 H 0.97003 * 119.99995 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47263 * 59.99809 * 14 12 3 37 37 H 1.09001 * 109.46974 * 179.97438 * 14 12 3 38 38 H 1.09002 * 109.47096 * 299.99455 * 14 12 3 39 39 H 1.08995 * 109.46889 * 65.00161 * 15 12 3 40 40 H 1.08997 * 109.47133 * 185.00405 * 15 12 3 41 41 H 0.97001 * 120.00675 * 0.02562 * 16 15 12 42 42 H 1.07998 * 119.08402 * 180.28804 * 22 20 19 43 43 H 1.08006 * 119.72557 * 179.73894 * 23 22 20 44 44 H 1.08001 * 120.67260 * 0.04268 * 25 24 23 45 45 H 1.07999 * 119.04639 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.08256 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1278 2.0688 -1.1791 5 1 1.4279 1.8820 -1.9802 6 6 3.1385 3.0057 -1.3450 7 7 4.1898 2.9867 -0.5534 8 14 3.0063 4.2936 -2.6916 9 1 1.7883 5.1145 -2.4736 10 1 4.2053 5.1692 -2.6585 11 1 2.9202 3.6213 -4.0129 12 6 2.3896 2.0268 1.2616 13 1 2.7927 3.0187 1.0572 14 6 3.4481 1.1829 1.9743 15 6 1.1526 2.1530 2.1532 16 7 0.0955 2.8587 1.4247 17 6 -1.0941 3.0862 2.0162 18 8 -1.2898 2.7060 3.1546 19 6 -2.1572 3.7964 1.2837 20 6 -3.0754 3.0970 0.5058 21 9 -2.9923 1.7513 0.4197 22 6 -4.0821 3.7718 -0.1808 23 6 -4.2022 5.1256 -0.1291 24 6 -3.3061 5.8926 0.6318 25 6 -3.3969 7.2940 0.7100 26 6 -2.4873 7.9663 1.4705 27 7 -1.5275 7.3377 2.1330 28 6 -1.3845 6.0320 2.1056 29 6 -2.2694 5.2500 1.3539 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8959 3.6417 -0.6690 36 1 4.3293 1.0930 1.3391 37 1 3.7246 1.6635 2.9128 38 1 3.0448 0.1910 2.1787 39 1 0.8016 1.1590 2.4303 40 1 1.4089 2.7119 3.0532 41 1 0.2513 3.1616 0.5165 42 1 -4.7844 3.2045 -0.7735 43 1 -4.9933 5.6144 -0.6784 44 1 -4.1719 7.8264 0.1785 45 1 -2.5508 9.0425 1.5348 46 1 -0.5868 5.5630 2.6624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153471003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:03 Heat of formation + Delta-G solvation = -4.034616 kcal Electronic energy + Delta-G solvation = -31395.096807 eV Core-core repulsion = 27199.926246 eV Total energy + Delta-G solvation = -4195.170561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.03038 -40.93565 -39.20327 -37.21893 -36.83216 -33.74379 -33.02939 -31.91608 -31.39717 -30.99985 -29.77046 -28.19468 -26.00336 -24.62575 -23.95202 -23.67375 -23.16053 -21.67865 -20.20398 -19.32423 -18.68416 -17.95109 -17.54441 -16.89495 -16.42895 -15.98701 -15.71558 -15.40366 -15.15655 -14.91408 -14.70933 -14.34380 -14.21718 -14.15006 -13.77336 -13.54743 -13.24002 -13.10697 -12.68723 -12.38951 -12.20278 -11.99469 -11.94193 -11.90443 -11.84753 -11.54673 -11.07656 -11.00956 -10.82811 -10.75255 -10.32726 -10.27462 -10.06973 -9.76040 -9.67410 -9.63404 -9.47501 -9.30913 -8.57295 -8.48756 -8.27469 -6.69914 -5.91100 -3.39192 -0.05389 0.57417 1.47463 2.61462 2.72036 3.29636 3.36725 3.38087 3.46877 3.76906 3.88561 4.24455 4.26230 4.39330 4.41776 4.61086 4.63559 4.83577 4.99205 5.22836 5.33293 5.36364 5.38870 5.43287 5.53003 5.69844 5.76845 5.86241 5.97166 6.06155 6.15198 6.23997 6.34105 6.35965 6.45842 6.46829 6.52353 6.56436 6.66616 6.81161 6.91892 6.93291 7.17274 7.42181 7.52148 7.73774 7.78256 7.97803 8.40408 8.52332 9.12936 9.74892 10.32057 11.14997 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.004562 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.637370 B = 6136.036305 C = 6969.663355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 N -0.581 5.581 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.172 3.828 13 H 0.105 0.895 14 C -0.143 4.143 15 C 0.099 3.901 16 N -0.684 5.684 17 C 0.554 3.446 18 O -0.540 6.540 19 C -0.123 4.123 20 C 0.137 3.863 21 F -0.121 7.121 22 C -0.128 4.128 23 C -0.071 4.071 24 C -0.034 4.034 25 C -0.149 4.149 26 C 0.078 3.922 27 N -0.477 5.477 28 C 0.153 3.847 29 C -0.065 4.065 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.156 0.844 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 5.440 1.438 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.064 3.936 13 H 0.123 0.877 14 C -0.203 4.203 15 C -0.027 4.027 16 N -0.333 5.333 17 C 0.337 3.663 18 O -0.419 6.419 19 C -0.129 4.129 20 C 0.117 3.883 21 F -0.099 7.099 22 C -0.148 4.148 23 C -0.089 4.089 24 C -0.039 4.039 25 C -0.169 4.169 26 C -0.067 4.067 27 N -0.184 5.184 28 C -0.016 4.016 29 C -0.068 4.068 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.252 0.748 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.174 0.826 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.283 5.827 2.678 15.656 hybrid contribution -0.577 -0.002 -1.770 1.862 sum -14.859 5.825 0.908 15.986 Atomic orbital electron populations 1.22394 0.99804 0.98979 1.01425 1.20790 0.91722 0.87399 0.98796 1.43872 1.75795 1.08330 1.02293 1.19032 1.08707 1.17962 0.93586 0.91935 1.25115 0.94460 1.01339 0.97868 1.69996 1.07163 1.35690 1.40229 0.86521 0.77083 0.81875 0.82198 1.20998 1.21595 1.20822 1.20571 0.89039 0.99667 0.84330 0.87720 1.21982 1.00925 0.98216 0.99137 1.22324 0.89348 0.95602 0.95376 1.46034 1.12106 1.56113 1.19075 1.17750 0.82448 0.79909 0.86185 1.90808 1.81013 1.52401 1.17650 1.21050 0.98503 0.92845 1.00490 1.17670 0.95973 0.77554 0.97119 1.91590 1.95526 1.28461 1.94345 1.20811 0.98161 0.95378 1.00456 1.20831 0.98081 0.92808 0.97168 1.18098 0.94939 0.94122 0.96770 1.21906 1.01195 0.92823 1.00943 1.22296 0.90548 1.00672 0.93192 1.67549 1.20844 1.10558 1.19488 1.23098 0.96014 0.88888 0.93609 1.19505 0.97100 0.91254 0.98955 0.93236 0.93521 0.94822 0.94117 0.94368 0.93430 0.90723 0.94543 0.94851 0.92473 0.92544 0.74790 0.83663 0.83784 0.83972 0.82637 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.99 37.16 0.37 -2.70 16 2 C 0.14 2.80 5.78 -4.04 -0.02 2.78 16 3 N -0.58 -12.93 1.90 -165.66 -0.32 -13.24 16 4 C -0.26 -6.48 9.00 -15.06 -0.14 -6.62 16 5 H 0.06 1.56 7.90 -52.48 -0.41 1.15 16 6 C 0.01 0.32 4.84 -17.43 -0.08 0.23 16 7 N -0.89 -23.38 11.08 55.49 0.61 -22.77 16 8 Si 0.89 20.33 29.59 -169.99 -5.03 15.30 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.17 3.61 1.97 -67.93 -0.13 3.47 16 13 H 0.11 2.51 5.85 -51.93 -0.30 2.20 16 14 C -0.14 -2.84 9.06 37.16 0.34 -2.51 16 15 C 0.10 1.88 4.38 -4.04 -0.02 1.86 16 16 N -0.68 -12.66 4.41 -61.41 -0.27 -12.93 16 17 C 0.55 10.11 5.86 -12.55 -0.07 10.04 16 18 O -0.54 -11.29 17.11 5.27 0.09 -11.20 16 19 C -0.12 -1.94 5.81 -102.75 -0.60 -2.54 16 20 C 0.14 1.97 7.29 -38.84 -0.28 1.68 16 21 F -0.12 -1.91 16.82 2.25 0.04 -1.87 16 22 C -0.13 -1.36 9.86 -39.99 -0.39 -1.75 16 23 C -0.07 -0.66 9.75 -39.58 -0.39 -1.05 16 24 C -0.03 -0.39 5.75 -106.85 -0.61 -1.01 16 25 C -0.15 -1.43 9.89 -39.37 -0.39 -1.82 16 26 C 0.08 0.85 11.07 -17.97 -0.20 0.65 16 27 N -0.48 -6.73 10.30 -13.24 -0.14 -6.86 16 28 C 0.15 2.28 10.73 -17.09 -0.18 2.09 16 29 C -0.07 -0.94 5.90 -104.81 -0.62 -1.56 16 30 H 0.05 0.95 5.45 -51.93 -0.28 0.66 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.04 0.74 6.23 -51.93 -0.32 0.41 16 35 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 36 H 0.07 1.68 7.86 -51.93 -0.41 1.27 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.61 6.52 -51.93 -0.34 0.27 16 39 H 0.06 1.11 6.96 -51.93 -0.36 0.75 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.41 8.07 7.66 -40.82 -0.31 7.76 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.16 2.45 7.37 -52.49 -0.39 2.06 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -29.23 382.43 -8.74 -37.97 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.07 Total: 8.60 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.42 Total: 1.25 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.11 Total: -55.80 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.23 -8.74 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153471003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.932 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds