Wall clock time and date at job start Wed Apr 1 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47018 * 2 1 4 4 C 1.36931 * 120.00227 * 276.09751 * 3 2 1 5 5 H 1.08003 * 120.00360 * 32.98178 * 4 3 2 6 6 C 1.38811 * 119.99949 * 212.98988 * 4 3 2 7 7 N 1.31616 * 119.99956 * 18.49099 * 6 4 3 8 8 Si 1.86804 * 119.99701 * 198.49175 * 6 4 3 9 9 H 1.48498 * 109.47073 * 60.00148 * 8 6 4 10 10 H 1.48502 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47589 * 299.99931 * 8 6 4 12 12 C 1.46503 * 119.99633 * 96.09760 * 3 2 1 13 13 H 1.09003 * 109.46597 * 176.04112 * 12 3 2 14 14 C 1.52996 * 109.47221 * 56.03828 * 12 3 2 15 15 C 1.53003 * 109.47120 * 296.03365 * 12 3 2 16 16 N 1.46499 * 109.46974 * 305.00277 * 15 12 3 17 17 C 1.34784 * 119.99608 * 179.97438 * 16 15 12 18 18 O 1.21607 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.47345 * 119.99838 * 179.97438 * 17 16 15 20 20 C 1.39196 * 120.76691 * 89.72524 * 19 17 16 21 21 F 1.35103 * 119.70410 * 359.97438 * 20 19 17 22 22 C 1.39285 * 120.58458 * 179.74203 * 20 19 17 23 23 C 1.36018 * 121.82453 * 0.52146 * 22 20 19 24 24 C 1.40364 * 120.53866 * 359.76841 * 23 22 20 25 25 C 1.40646 * 122.23376 * 179.97438 * 24 23 22 26 26 C 1.36300 * 118.64651 * 180.02562 * 25 24 23 27 27 N 1.32486 * 121.90181 * 359.97438 * 26 25 24 28 28 C 1.31379 * 122.67788 * 359.97438 * 27 26 25 29 29 C 1.39987 * 119.84396 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47287 * 299.99902 * 1 2 3 31 31 H 1.09003 * 109.47132 * 59.99674 * 1 2 3 32 32 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46944 * 239.99744 * 2 1 3 34 34 H 1.08998 * 109.46751 * 120.00097 * 2 1 3 35 35 H 0.97003 * 119.99995 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47263 * 59.99809 * 14 12 3 37 37 H 1.09001 * 109.46974 * 179.97438 * 14 12 3 38 38 H 1.09002 * 109.47096 * 299.99455 * 14 12 3 39 39 H 1.08995 * 109.46889 * 65.00161 * 15 12 3 40 40 H 1.08997 * 109.47133 * 185.00405 * 15 12 3 41 41 H 0.97001 * 120.00675 * 0.02562 * 16 15 12 42 42 H 1.07998 * 119.08402 * 180.28804 * 22 20 19 43 43 H 1.08006 * 119.72557 * 179.73894 * 23 22 20 44 44 H 1.08001 * 120.67260 * 0.04268 * 25 24 23 45 45 H 1.07999 * 119.04639 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.08256 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1278 2.0688 -1.1791 5 1 1.4279 1.8820 -1.9802 6 6 3.1385 3.0057 -1.3450 7 7 4.1898 2.9867 -0.5534 8 14 3.0063 4.2936 -2.6916 9 1 1.7883 5.1145 -2.4736 10 1 4.2053 5.1692 -2.6585 11 1 2.9202 3.6213 -4.0129 12 6 2.3896 2.0268 1.2616 13 1 2.7927 3.0187 1.0572 14 6 3.4481 1.1829 1.9743 15 6 1.1526 2.1530 2.1532 16 7 0.0955 2.8587 1.4247 17 6 -1.0941 3.0862 2.0162 18 8 -1.2898 2.7060 3.1546 19 6 -2.1572 3.7964 1.2837 20 6 -3.0754 3.0970 0.5058 21 9 -2.9923 1.7513 0.4197 22 6 -4.0821 3.7718 -0.1808 23 6 -4.2022 5.1256 -0.1291 24 6 -3.3061 5.8926 0.6318 25 6 -3.3969 7.2940 0.7100 26 6 -2.4873 7.9663 1.4705 27 7 -1.5275 7.3377 2.1330 28 6 -1.3845 6.0320 2.1056 29 6 -2.2694 5.2500 1.3539 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8959 3.6417 -0.6690 36 1 4.3293 1.0930 1.3391 37 1 3.7246 1.6635 2.9128 38 1 3.0448 0.1910 2.1787 39 1 0.8016 1.1590 2.4303 40 1 1.4089 2.7119 3.0532 41 1 0.2513 3.1616 0.5165 42 1 -4.7844 3.2045 -0.7735 43 1 -4.9933 5.6144 -0.6784 44 1 -4.1719 7.8264 0.1785 45 1 -2.5508 9.0425 1.5348 46 1 -0.5868 5.5630 2.6624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153471003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:02 Heat of formation + Delta-G solvation = -20.285163 kcal Electronic energy + Delta-G solvation = -31395.801483 eV Core-core repulsion = 27199.926246 eV Total energy + Delta-G solvation = -4195.875237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.17949 -41.91000 -40.61196 -38.67343 -37.99795 -35.34133 -34.07041 -33.73556 -32.70055 -32.19493 -30.76447 -29.96042 -27.42732 -25.81963 -25.64287 -24.59895 -24.27952 -23.31055 -21.49052 -21.03658 -19.70281 -19.21148 -18.69263 -18.42197 -17.59603 -17.38690 -16.74586 -16.71259 -16.56936 -16.36959 -16.06387 -15.64740 -15.50641 -15.17868 -15.11464 -14.73632 -14.62131 -14.33393 -14.08645 -14.03935 -13.74603 -13.55079 -13.23387 -12.94679 -12.91782 -12.81799 -12.79834 -12.78800 -12.55978 -12.44313 -12.11720 -11.88539 -11.40527 -11.28181 -11.20134 -11.09443 -10.63878 -10.44830 -10.23188 -10.07469 -9.20497 -8.55963 -7.84658 -5.34005 -0.98468 -0.33885 0.53551 1.32378 1.46461 1.49675 1.54020 1.72836 2.16687 2.51509 2.84135 2.86435 3.28741 3.33274 3.39104 3.52562 3.60477 3.64886 3.75797 3.80626 4.18499 4.20908 4.42576 4.45507 4.49379 4.53971 4.62264 4.64291 4.69711 4.76854 4.80687 4.84375 4.88823 4.91700 4.95076 5.03864 5.12848 5.19876 5.29992 5.37111 5.47941 5.55744 5.62359 5.67970 5.72777 5.80794 6.44462 6.50436 6.86084 7.03952 7.21688 7.90342 8.42719 9.18651 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.004562 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.637370 B = 6136.036305 C = 6969.663355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.058 0.942 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.299 1.299 11 H -0.280 1.280 12 C 0.177 3.823 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.110 3.890 16 N -0.683 5.683 17 C 0.560 3.440 18 O -0.576 6.576 19 C -0.165 4.165 20 C 0.133 3.867 21 F -0.136 7.136 22 C -0.137 4.137 23 C -0.038 4.038 24 C -0.050 4.050 25 C -0.119 4.119 26 C 0.058 3.942 27 N -0.496 5.496 28 C 0.119 3.881 29 C -0.076 4.076 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.249 0.751 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.410 0.590 42 H 0.180 0.820 43 H 0.199 0.801 44 H 0.195 0.805 45 H 0.189 0.811 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 6.906 -0.273 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.227 4.227 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.206 1.206 12 C 0.070 3.930 13 H 0.093 0.907 14 C -0.193 4.193 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.346 3.654 18 O -0.457 6.457 19 C -0.171 4.171 20 C 0.113 3.887 21 F -0.114 7.114 22 C -0.157 4.157 23 C -0.055 4.055 24 C -0.056 4.056 25 C -0.138 4.138 26 C -0.087 4.087 27 N -0.204 5.204 28 C -0.050 4.050 29 C -0.079 4.079 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.246 0.754 42 H 0.197 0.803 43 H 0.216 0.784 44 H 0.212 0.788 45 H 0.206 0.794 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.734 7.272 0.967 19.191 hybrid contribution 0.400 -0.392 -1.257 1.376 sum -17.334 6.880 -0.290 18.651 Atomic orbital electron populations 1.22200 0.98251 1.00121 1.00409 1.20855 0.92744 0.86254 0.98842 1.43983 1.75929 1.09193 1.02062 1.19151 1.07978 1.17888 0.94077 0.92428 1.25640 0.94429 1.02917 0.99699 1.70121 1.07657 1.36103 1.41655 0.85679 0.76552 0.79915 0.80286 1.20595 1.22497 1.20602 1.20426 0.89924 0.98278 0.84385 0.90688 1.21845 0.99345 0.98963 0.99133 1.22082 0.88794 0.95630 0.94996 1.45998 1.12378 1.56131 1.18661 1.18120 0.82599 0.78982 0.85742 1.90759 1.81701 1.53965 1.19254 1.20852 0.99210 0.93798 1.03210 1.18166 0.96521 0.76988 0.96997 1.91546 1.95683 1.29745 1.94433 1.21169 0.97702 0.96239 1.00545 1.21438 0.97359 0.92067 0.94669 1.18546 0.94644 0.95516 0.96873 1.22453 1.00800 0.91738 0.98774 1.22939 0.90243 1.02293 0.93240 1.67479 1.22382 1.10201 1.20329 1.22809 0.96958 0.89645 0.95576 1.19563 0.98205 0.90479 0.99663 0.94205 0.94477 0.92542 0.94901 0.93399 0.94144 0.93519 0.92802 0.93470 0.92703 0.92269 0.75377 0.80253 0.78379 0.78796 0.79410 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.99 71.98 0.72 -4.78 16 2 C 0.14 5.60 5.78 86.38 0.50 6.09 16 3 N -0.59 -26.79 1.90 -678.02 -1.29 -28.08 16 4 C -0.26 -13.06 9.00 84.03 0.76 -12.31 16 5 H 0.06 2.91 7.90 -2.91 -0.02 2.89 16 6 C -0.03 -1.50 4.84 84.86 0.41 -1.09 16 7 N -0.91 -49.45 11.08 21.65 0.24 -49.21 16 8 Si 0.95 42.43 29.59 68.60 2.03 44.46 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.18 7.70 1.97 44.99 0.09 7.79 16 13 H 0.08 3.76 5.85 -2.39 -0.01 3.75 16 14 C -0.13 -5.40 9.06 71.98 0.65 -4.75 16 15 C 0.11 4.37 4.38 86.38 0.38 4.75 16 16 N -0.68 -26.64 4.41 -466.45 -2.06 -28.70 16 17 C 0.56 21.59 5.86 86.64 0.51 22.10 16 18 O -0.58 -25.46 17.11 -4.05 -0.07 -25.53 16 19 C -0.16 -5.35 5.81 -18.65 -0.11 -5.46 16 20 C 0.13 3.73 7.29 22.75 0.17 3.90 16 21 F -0.14 -4.27 16.82 44.97 0.76 -3.52 16 22 C -0.14 -2.41 9.86 22.01 0.22 -2.20 16 23 C -0.04 -0.51 9.75 22.27 0.22 -0.30 16 24 C -0.05 -1.00 5.75 -21.31 -0.12 -1.12 16 25 C -0.12 -1.72 9.89 22.41 0.22 -1.49 16 26 C 0.06 1.10 11.07 84.14 0.93 2.04 16 27 N -0.50 -13.99 10.30 -195.79 -2.02 -16.01 16 28 C 0.12 3.71 10.73 85.18 0.91 4.62 16 29 C -0.08 -2.20 5.90 -19.99 -0.12 -2.32 16 30 H 0.04 1.53 5.45 -2.39 -0.01 1.51 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.05 1.83 6.23 -2.39 -0.01 1.82 16 35 H 0.25 13.41 8.31 -92.71 -0.77 12.63 16 36 H 0.05 2.14 7.86 -2.39 -0.02 2.12 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.74 6.52 -2.39 -0.02 1.72 16 39 H 0.05 2.19 6.96 -2.39 -0.02 2.18 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.41 16.80 7.66 -92.71 -0.71 16.09 16 42 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 45 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.14 4.76 7.37 -2.91 -0.02 4.74 16 Total: -1.00 -68.04 382.43 4.23 -63.81 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.31 Total: 27.30 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.33 Total: 15.46 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.13 Total: -122.00 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.07 Total: -25.53 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.76 Total: -3.52 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.04 4.23 -63.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153471003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.524 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds