Wall clock time and date at job start Wed Apr 1 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47154 * 2 1 4 4 C 1.36939 * 119.99849 * 84.30352 * 3 2 1 5 5 H 1.08005 * 120.00143 * 32.30078 * 4 3 2 6 6 C 1.38814 * 120.00151 * 212.57562 * 4 3 2 7 7 N 1.31617 * 119.99875 * 10.54077 * 6 4 3 8 8 Si 1.86803 * 120.00013 * 190.53826 * 6 4 3 9 9 H 1.48502 * 109.46979 * 90.00355 * 8 6 4 10 10 H 1.48497 * 109.46807 * 210.00200 * 8 6 4 11 11 H 1.48492 * 109.47124 * 330.00537 * 8 6 4 12 12 C 1.46496 * 120.00321 * 264.30114 * 3 2 1 13 13 H 1.09005 * 109.47362 * 183.87139 * 12 3 2 14 14 C 1.52995 * 109.47199 * 63.86668 * 12 3 2 15 15 C 1.53007 * 109.47110 * 303.86880 * 12 3 2 16 16 N 1.46497 * 109.46957 * 304.99900 * 15 12 3 17 17 C 1.34778 * 119.99906 * 179.97438 * 16 15 12 18 18 O 1.21612 * 119.99996 * 0.02562 * 17 16 15 19 19 C 1.47389 * 119.99938 * 179.97438 * 17 16 15 20 20 C 1.38949 * 120.65738 * 5.69654 * 19 17 16 21 21 C 1.38739 * 120.73223 * 179.69236 * 20 19 17 22 22 C 1.37500 * 121.67859 * 0.61271 * 21 20 19 23 23 F 1.35097 * 119.85084 * 179.69203 * 22 21 20 24 24 C 1.40581 * 120.29274 * 359.67566 * 22 21 20 25 25 C 1.40587 * 122.24629 * 179.97438 * 24 22 21 26 26 C 1.36314 * 118.64976 * 180.02562 * 25 24 22 27 27 N 1.32485 * 121.87607 * 0.04412 * 26 25 24 28 28 C 1.31363 * 122.68982 * 359.97231 * 27 26 25 29 29 C 1.40022 * 119.84564 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47069 * 299.99999 * 1 2 3 32 32 H 1.09000 * 109.47388 * 59.99141 * 1 2 3 33 33 H 1.08997 * 109.46597 * 240.00170 * 2 1 3 34 34 H 1.08999 * 109.46864 * 120.00301 * 2 1 3 35 35 H 0.96994 * 120.00283 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47354 * 179.97438 * 14 12 3 37 37 H 1.08997 * 109.47541 * 300.00211 * 14 12 3 38 38 H 1.09008 * 109.47139 * 60.00074 * 14 12 3 39 39 H 1.08994 * 109.46909 * 64.99910 * 15 12 3 40 40 H 1.09002 * 109.46690 * 184.99830 * 15 12 3 41 41 H 0.97001 * 120.00230 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.63189 * 359.97438 * 20 19 17 43 43 H 1.08001 * 119.15751 * 180.28635 * 21 20 19 44 44 H 1.07998 * 120.67687 * 0.02562 * 25 24 22 45 45 H 1.08005 * 119.06273 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.07863 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1356 2.0659 1.1801 5 1 2.3855 1.5377 2.0884 6 6 1.9276 3.4381 1.2100 7 7 1.4188 4.0496 0.1614 8 14 2.3699 4.4167 2.7385 9 1 3.7764 4.8825 2.6383 10 1 1.4669 5.5899 2.8535 11 1 2.2180 3.5556 3.9387 12 6 2.3813 2.0298 -1.2624 13 1 2.7844 3.0219 -1.0584 14 6 1.1391 2.1559 -2.1466 15 6 3.4369 1.1887 -1.9829 16 7 4.5776 0.9676 -1.0907 17 6 5.6349 0.2472 -1.5144 18 8 5.6422 -0.2190 -2.6376 19 6 6.7828 0.0253 -0.6169 20 6 6.7409 0.4504 0.7053 21 6 7.8180 0.2366 1.5532 22 6 8.9646 -0.3872 1.1209 23 9 9.9937 -0.5707 1.9767 24 6 9.0705 -0.8351 -0.2074 25 6 10.2232 -1.4770 -0.6929 26 6 10.2470 -1.8810 -1.9946 27 7 9.2192 -1.6844 -2.8071 28 6 8.1125 -1.0917 -2.4206 29 6 7.9885 -0.6393 -1.1013 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2731 5.0083 0.1824 36 1 1.4090 2.6390 -3.0857 37 1 0.7360 1.1640 -2.3506 38 1 0.3870 2.7552 -1.6333 39 1 3.0054 0.2286 -2.2657 40 1 3.7716 1.7142 -2.8774 41 1 4.5719 1.3398 -0.1949 42 1 5.8582 0.9486 1.0783 43 1 7.7563 0.5735 2.5775 44 1 11.0725 -1.6467 -0.0477 45 1 11.1290 -2.3753 -2.3744 46 1 7.3002 -0.9536 -3.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154780066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:07 Heat of formation + Delta-G solvation = -1.926759 kcal Electronic energy + Delta-G solvation = -30443.254023 eV Core-core repulsion = 26248.174866 eV Total energy + Delta-G solvation = -4195.079157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.29160 -40.93214 -39.26308 -37.20553 -36.90248 -34.01900 -32.81714 -31.94333 -31.34659 -31.06172 -29.59414 -28.38161 -25.88245 -24.59835 -24.03349 -23.86607 -22.86306 -21.67435 -20.47686 -19.40014 -18.40940 -18.04359 -17.67388 -17.07706 -16.59940 -16.03526 -15.68378 -15.30932 -15.10745 -15.00924 -14.77152 -14.50303 -14.31504 -13.91878 -13.86865 -13.51401 -13.33880 -12.94380 -12.76900 -12.57361 -12.45910 -12.04512 -11.88460 -11.71712 -11.62602 -11.47641 -11.31749 -11.06344 -10.92028 -10.54130 -10.34710 -10.23567 -10.02847 -9.76414 -9.63975 -9.58438 -9.48470 -9.42889 -8.68804 -8.59927 -8.16212 -6.76712 -5.94294 -3.45389 -0.18349 0.58577 1.36820 2.45438 3.24208 3.28316 3.33232 3.34762 3.40127 3.71379 3.86414 4.22584 4.30260 4.34291 4.46567 4.57754 4.67342 4.72186 5.06620 5.22975 5.25265 5.30908 5.44755 5.52296 5.64700 5.80278 5.81413 5.84977 5.88844 6.04538 6.09073 6.25847 6.38460 6.40286 6.43939 6.50007 6.53283 6.65927 6.68843 6.75010 6.91052 6.95412 7.21970 7.48370 7.57084 7.69657 7.83226 7.91094 8.35061 8.47274 9.09455 9.69273 10.25072 11.11912 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003379 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.735952 B = 8284.864490 C = 9688.119803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.585 5.585 4 C -0.262 4.262 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.098 3.902 16 N -0.689 5.689 17 C 0.552 3.448 18 O -0.549 6.549 19 C -0.102 4.102 20 C -0.055 4.055 21 C -0.135 4.135 22 C 0.119 3.881 23 F -0.129 7.129 24 C -0.057 4.057 25 C -0.158 4.158 26 C 0.081 3.919 27 N -0.484 5.484 28 C 0.151 3.849 29 C -0.059 4.059 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.255 0.745 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.411 0.589 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -7.372 -0.024 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.307 5.307 4 C -0.392 4.392 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.205 1.205 12 C 0.069 3.931 13 H 0.125 0.875 14 C -0.201 4.201 15 C -0.027 4.027 16 N -0.339 5.339 17 C 0.339 3.661 18 O -0.430 6.430 19 C -0.107 4.107 20 C -0.074 4.074 21 C -0.155 4.155 22 C 0.099 3.901 23 F -0.107 7.107 24 C -0.063 4.063 25 C -0.178 4.178 26 C -0.064 4.064 27 N -0.193 5.193 28 C -0.018 4.018 29 C -0.062 4.062 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.173 0.827 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 12.524 -7.847 -1.624 14.868 hybrid contribution 0.193 1.071 2.507 2.733 sum 12.717 -6.776 0.884 14.437 Atomic orbital electron populations 1.22386 0.99769 0.98389 1.02088 1.20807 0.91978 0.87599 0.98076 1.43991 1.73915 1.09845 1.02929 1.19164 1.42071 0.90133 0.87815 0.91661 1.25186 0.98493 0.98157 0.97016 1.69922 1.45523 1.09230 1.29072 0.86363 0.77853 0.79885 0.83049 1.21386 1.21719 1.20476 1.20565 0.90951 0.96633 0.84910 0.87550 1.22118 1.00504 0.99496 0.98020 1.22257 0.86795 1.00876 0.92733 1.45901 1.17256 1.51601 1.19108 1.17864 0.82405 0.79402 0.86443 1.90574 1.80489 1.51559 1.20367 1.21092 0.94118 1.01035 0.94487 1.21424 0.98377 0.95738 0.91829 1.21047 0.92078 1.00386 1.01987 1.17626 0.85709 1.00067 0.86678 1.91509 1.57094 1.93055 1.69062 1.18033 0.95539 1.00227 0.92480 1.21793 0.97754 1.00295 0.97932 1.22318 0.97088 0.96884 0.90061 1.67709 1.00501 1.13198 1.37846 1.24434 0.95223 0.88727 0.93373 1.19618 0.92299 0.98951 0.95299 0.95353 0.92932 0.93131 0.94418 0.94607 0.93465 0.95174 0.95252 0.90048 0.92415 0.92242 0.75101 0.83064 0.83466 0.84118 0.82734 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.02 37.16 0.37 -2.70 16 2 C 0.14 2.67 5.74 -4.04 -0.02 2.65 16 3 N -0.58 -12.15 1.83 -165.66 -0.30 -12.46 16 4 C -0.26 -6.04 9.53 -15.06 -0.14 -6.18 16 5 H 0.07 1.50 7.85 -52.48 -0.41 1.09 16 6 C 0.01 0.27 5.02 -17.43 -0.09 0.18 16 7 N -0.89 -22.39 9.88 55.49 0.55 -21.84 16 8 Si 0.90 19.30 29.57 -169.99 -5.03 14.27 16 9 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 12 C 0.18 3.52 1.92 -67.93 -0.13 3.39 16 13 H 0.11 2.43 5.95 -51.93 -0.31 2.12 16 14 C -0.14 -2.78 8.24 37.16 0.31 -2.47 16 15 C 0.10 1.73 4.85 -4.04 -0.02 1.71 16 16 N -0.69 -11.23 5.34 -61.39 -0.33 -11.55 16 17 C 0.55 8.85 7.74 -12.54 -0.10 8.75 16 18 O -0.55 -9.85 13.65 5.27 0.07 -9.78 16 19 C -0.10 -1.42 6.05 -102.83 -0.62 -2.05 16 20 C -0.05 -0.65 9.52 -39.13 -0.37 -1.02 16 21 C -0.13 -1.45 9.90 -39.67 -0.39 -1.84 16 22 C 0.12 1.38 7.28 -38.97 -0.28 1.10 16 23 F -0.13 -1.44 16.72 2.25 0.04 -1.40 16 24 C -0.06 -0.71 5.75 -106.80 -0.61 -1.33 16 25 C -0.16 -1.73 9.70 -39.39 -0.38 -2.11 16 26 C 0.08 0.91 11.07 -17.96 -0.20 0.71 16 27 N -0.48 -6.75 10.30 -13.23 -0.14 -6.88 16 28 C 0.15 2.21 10.54 -17.08 -0.18 2.03 16 29 C -0.06 -0.82 5.90 -104.82 -0.62 -1.44 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.96 6.03 -51.93 -0.31 0.64 16 33 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.53 6.49 -51.93 -0.34 0.20 16 38 H 0.08 1.83 7.11 -51.92 -0.37 1.46 16 39 H 0.06 1.04 6.75 -51.93 -0.35 0.68 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.41 6.63 6.19 -40.82 -0.25 6.38 16 42 H 0.15 1.68 6.45 -52.49 -0.34 1.35 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.14 1.19 7.81 -52.49 -0.41 0.78 16 45 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.20 3.11 5.15 -52.49 -0.27 2.84 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -26.13 374.57 -8.76 -34.89 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.78 Total: 9.74 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.49 Total: -0.63 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.22 Total: -52.73 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.13 -8.76 -34.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154780066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.965 kcal (2) G-P(sol) polarization free energy of solvation -26.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds