Wall clock time and date at job start Wed Apr 1 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47154 * 2 1 4 4 C 1.36939 * 119.99849 * 84.30352 * 3 2 1 5 5 H 1.08005 * 120.00143 * 32.30078 * 4 3 2 6 6 C 1.38814 * 120.00151 * 212.57562 * 4 3 2 7 7 N 1.31617 * 119.99875 * 10.54077 * 6 4 3 8 8 Si 1.86803 * 120.00013 * 190.53826 * 6 4 3 9 9 H 1.48502 * 109.46979 * 90.00355 * 8 6 4 10 10 H 1.48497 * 109.46807 * 210.00200 * 8 6 4 11 11 H 1.48492 * 109.47124 * 330.00537 * 8 6 4 12 12 C 1.46496 * 120.00321 * 264.30114 * 3 2 1 13 13 H 1.09005 * 109.47362 * 183.87139 * 12 3 2 14 14 C 1.52995 * 109.47199 * 63.86668 * 12 3 2 15 15 C 1.53007 * 109.47110 * 303.86880 * 12 3 2 16 16 N 1.46497 * 109.46957 * 304.99900 * 15 12 3 17 17 C 1.34778 * 119.99906 * 179.97438 * 16 15 12 18 18 O 1.21612 * 119.99996 * 0.02562 * 17 16 15 19 19 C 1.47389 * 119.99938 * 179.97438 * 17 16 15 20 20 C 1.38949 * 120.65738 * 5.69654 * 19 17 16 21 21 C 1.38739 * 120.73223 * 179.69236 * 20 19 17 22 22 C 1.37500 * 121.67859 * 0.61271 * 21 20 19 23 23 F 1.35097 * 119.85084 * 179.69203 * 22 21 20 24 24 C 1.40581 * 120.29274 * 359.67566 * 22 21 20 25 25 C 1.40587 * 122.24629 * 179.97438 * 24 22 21 26 26 C 1.36314 * 118.64976 * 180.02562 * 25 24 22 27 27 N 1.32485 * 121.87607 * 0.04412 * 26 25 24 28 28 C 1.31363 * 122.68982 * 359.97231 * 27 26 25 29 29 C 1.40022 * 119.84564 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47069 * 299.99999 * 1 2 3 32 32 H 1.09000 * 109.47388 * 59.99141 * 1 2 3 33 33 H 1.08997 * 109.46597 * 240.00170 * 2 1 3 34 34 H 1.08999 * 109.46864 * 120.00301 * 2 1 3 35 35 H 0.96994 * 120.00283 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47354 * 179.97438 * 14 12 3 37 37 H 1.08997 * 109.47541 * 300.00211 * 14 12 3 38 38 H 1.09008 * 109.47139 * 60.00074 * 14 12 3 39 39 H 1.08994 * 109.46909 * 64.99910 * 15 12 3 40 40 H 1.09002 * 109.46690 * 184.99830 * 15 12 3 41 41 H 0.97001 * 120.00230 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.63189 * 359.97438 * 20 19 17 43 43 H 1.08001 * 119.15751 * 180.28635 * 21 20 19 44 44 H 1.07998 * 120.67687 * 0.02562 * 25 24 22 45 45 H 1.08005 * 119.06273 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.07863 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1356 2.0659 1.1801 5 1 2.3855 1.5377 2.0884 6 6 1.9276 3.4381 1.2100 7 7 1.4188 4.0496 0.1614 8 14 2.3699 4.4167 2.7385 9 1 3.7764 4.8825 2.6383 10 1 1.4669 5.5899 2.8535 11 1 2.2180 3.5556 3.9387 12 6 2.3813 2.0298 -1.2624 13 1 2.7844 3.0219 -1.0584 14 6 1.1391 2.1559 -2.1466 15 6 3.4369 1.1887 -1.9829 16 7 4.5776 0.9676 -1.0907 17 6 5.6349 0.2472 -1.5144 18 8 5.6422 -0.2190 -2.6376 19 6 6.7828 0.0253 -0.6169 20 6 6.7409 0.4504 0.7053 21 6 7.8180 0.2366 1.5532 22 6 8.9646 -0.3872 1.1209 23 9 9.9937 -0.5707 1.9767 24 6 9.0705 -0.8351 -0.2074 25 6 10.2232 -1.4770 -0.6929 26 6 10.2470 -1.8810 -1.9946 27 7 9.2192 -1.6844 -2.8071 28 6 8.1125 -1.0917 -2.4206 29 6 7.9885 -0.6393 -1.1013 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2731 5.0083 0.1824 36 1 1.4090 2.6390 -3.0857 37 1 0.7360 1.1640 -2.3506 38 1 0.3870 2.7552 -1.6333 39 1 3.0054 0.2286 -2.2657 40 1 3.7716 1.7142 -2.8774 41 1 4.5719 1.3398 -0.1949 42 1 5.8582 0.9486 1.0783 43 1 7.7563 0.5735 2.5775 44 1 11.0725 -1.6467 -0.0477 45 1 11.1290 -2.3753 -2.3744 46 1 7.3002 -0.9536 -3.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154780066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:06 Heat of formation + Delta-G solvation = -14.384467 kcal Electronic energy + Delta-G solvation = -30443.794230 eV Core-core repulsion = 26248.174866 eV Total energy + Delta-G solvation = -4195.619364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.18404 -41.94135 -40.49074 -38.60706 -38.04809 -35.43072 -33.84074 -33.64920 -32.51805 -32.29036 -30.65714 -30.05176 -27.22157 -25.86816 -25.51576 -24.81470 -23.96959 -23.23179 -21.64866 -20.97378 -19.39827 -19.16855 -18.73047 -18.53948 -17.73736 -16.95287 -16.87865 -16.67730 -16.46465 -16.21252 -15.94132 -15.74639 -15.54398 -15.25390 -14.97166 -14.81610 -14.45079 -14.24702 -13.98520 -13.95063 -13.59916 -13.52034 -13.25372 -13.06449 -12.93084 -12.84091 -12.74153 -12.61420 -12.60202 -12.14702 -12.03860 -11.71780 -11.24413 -11.22221 -11.19215 -10.93701 -10.56265 -10.40934 -10.37872 -10.00515 -9.12526 -8.49576 -7.75620 -5.26847 -1.15891 -0.34541 0.38690 1.45940 1.53213 1.58589 1.63158 2.15583 2.17937 2.58648 2.78034 2.86853 3.31536 3.39401 3.41130 3.50859 3.59924 3.68140 3.72028 3.76963 4.24149 4.25889 4.34640 4.50405 4.53790 4.58375 4.59361 4.71381 4.78984 4.86360 4.88662 4.91915 4.94642 4.95800 4.97582 5.08657 5.15459 5.22098 5.37503 5.46006 5.49267 5.62026 5.65001 5.78875 5.83303 5.99181 6.54786 6.61723 6.87523 7.19913 7.30853 7.97718 8.48751 9.28314 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003379 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.735952 B = 8284.864490 C = 9688.119803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.256 4.256 5 H 0.068 0.932 6 C -0.032 4.032 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.308 1.308 11 H -0.274 1.274 12 C 0.184 3.816 13 H 0.078 0.922 14 C -0.132 4.132 15 C 0.112 3.888 16 N -0.689 5.689 17 C 0.554 3.446 18 O -0.572 6.572 19 C -0.125 4.125 20 C -0.039 4.039 21 C -0.132 4.132 22 C 0.127 3.873 23 F -0.122 7.122 24 C -0.070 4.070 25 C -0.146 4.146 26 C 0.073 3.927 27 N -0.500 5.500 28 C 0.129 3.871 29 C -0.068 4.068 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.246 0.754 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.412 0.588 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.189 0.811 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 -8.548 1.496 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.314 5.314 4 C -0.387 4.387 5 H 0.085 0.915 6 C -0.229 4.229 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.235 1.235 11 H -0.199 1.199 12 C 0.077 3.923 13 H 0.096 0.904 14 C -0.192 4.192 15 C -0.014 4.014 16 N -0.339 5.339 17 C 0.342 3.658 18 O -0.455 6.455 19 C -0.130 4.130 20 C -0.059 4.059 21 C -0.151 4.151 22 C 0.107 3.893 23 F -0.100 7.100 24 C -0.077 4.077 25 C -0.165 4.165 26 C -0.072 4.072 27 N -0.208 5.208 28 C -0.039 4.039 29 C -0.071 4.071 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.250 0.750 42 H 0.177 0.823 43 H 0.194 0.806 44 H 0.188 0.812 45 H 0.206 0.794 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 14.436 -9.044 -0.095 17.035 hybrid contribution -0.314 1.358 2.064 2.490 sum 14.122 -7.687 1.969 16.198 Atomic orbital electron populations 1.22275 0.99328 0.99704 1.00457 1.20874 0.92230 0.86498 0.98811 1.44090 1.74231 1.10399 1.02634 1.19357 1.40569 0.90206 0.88534 0.91473 1.25697 0.99255 0.99079 0.98825 1.70078 1.47094 1.08630 1.30383 0.85527 0.77228 0.78153 0.80965 1.20927 1.23542 1.19934 1.20379 0.91472 0.95605 0.84886 0.90373 1.21969 0.99551 0.99534 0.98118 1.21962 0.86637 1.00185 0.92595 1.45816 1.17146 1.52008 1.18926 1.18153 0.82630 0.78564 0.86411 1.90572 1.80991 1.52417 1.21542 1.20882 0.93677 1.03353 0.95065 1.21550 0.98935 0.94380 0.90993 1.21294 0.91136 0.99672 1.03040 1.17645 0.85964 0.99373 0.86278 1.91531 1.56848 1.92914 1.68747 1.18249 0.95758 1.00785 0.92880 1.22156 0.97813 0.98462 0.98100 1.22865 0.97271 0.96829 0.90213 1.67668 1.00939 1.13208 1.39021 1.24145 0.95520 0.90538 0.93734 1.19615 0.92849 0.99276 0.95327 0.92548 0.95146 0.94075 0.93366 0.94092 0.94434 0.93901 0.94208 0.93191 0.92510 0.92177 0.74972 0.82312 0.80590 0.81164 0.79415 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 10.02 71.98 0.72 -4.93 16 2 C 0.14 5.16 5.74 86.38 0.50 5.66 16 3 N -0.59 -24.36 1.83 -678.04 -1.24 -25.61 16 4 C -0.26 -11.69 9.53 84.03 0.80 -10.89 16 5 H 0.07 3.01 7.85 -2.91 -0.02 2.99 16 6 C -0.03 -1.51 5.02 84.86 0.43 -1.08 16 7 N -0.92 -46.82 9.88 21.65 0.21 -46.60 16 8 Si 0.95 39.64 29.57 68.60 2.03 41.67 16 9 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.31 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 C 0.18 7.35 1.92 44.99 0.09 7.43 16 13 H 0.08 3.64 5.95 -2.38 -0.01 3.62 16 14 C -0.13 -5.20 8.24 71.98 0.59 -4.61 16 15 C 0.11 3.91 4.85 86.38 0.42 4.33 16 16 N -0.69 -22.35 5.34 -466.40 -2.49 -24.84 16 17 C 0.55 17.88 7.74 86.65 0.67 18.55 16 18 O -0.57 -21.11 13.65 -4.07 -0.06 -21.16 16 19 C -0.12 -3.42 6.05 -18.70 -0.11 -3.53 16 20 C -0.04 -0.87 9.52 22.56 0.21 -0.66 16 21 C -0.13 -2.44 9.90 22.22 0.22 -2.22 16 22 C 0.13 2.58 7.28 22.67 0.17 2.75 16 23 F -0.12 -2.29 16.72 44.97 0.75 -1.54 16 24 C -0.07 -1.63 5.75 -21.28 -0.12 -1.76 16 25 C -0.15 -2.78 9.70 22.39 0.22 -2.57 16 26 C 0.07 1.48 11.07 84.15 0.93 2.41 16 27 N -0.50 -13.70 10.30 -195.76 -2.02 -15.72 16 28 C 0.13 3.83 10.54 85.20 0.90 4.73 16 29 C -0.07 -1.86 5.90 -19.99 -0.12 -1.98 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.53 6.03 -2.39 -0.01 1.51 16 33 H 0.05 1.66 6.34 -2.39 -0.02 1.65 16 34 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.25 12.61 8.31 -92.71 -0.77 11.84 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.44 6.49 -2.39 -0.02 1.43 16 38 H 0.05 2.29 7.11 -2.38 -0.02 2.27 16 39 H 0.06 2.01 6.75 -2.39 -0.02 1.99 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.41 13.10 6.19 -92.71 -0.57 12.53 16 42 H 0.16 3.24 6.45 -2.91 -0.02 3.22 16 43 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 44 H 0.17 2.18 7.81 -2.91 -0.02 2.16 16 45 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 46 H 0.18 6.00 5.15 -2.91 -0.02 5.99 16 Total: -1.00 -56.73 374.57 4.16 -52.58 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.46 Total: 29.60 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.51 Total: 11.63 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -5.54 Total: -112.77 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.75 Total: -1.54 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -56.73 4.16 -52.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154780066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.191 kcal (2) G-P(sol) polarization free energy of solvation -56.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds