Wall clock time and date at job start Wed Apr 1 2020 03:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46862 * 2 1 4 4 C 1.34234 * 116.99719 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99749 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.46799 * 174.65246 * 6 4 3 8 8 C 1.46896 * 111.00022 * 287.78390 * 7 6 4 9 9 C 1.50700 * 109.46972 * 160.31011 * 8 7 6 10 10 H 1.08001 * 120.00131 * 4.86924 * 9 8 7 11 11 C 1.37885 * 119.99963 * 184.86211 * 9 8 7 12 12 N 1.31505 * 120.00085 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99714 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47440 * 60.00452 * 13 11 9 15 15 H 1.48504 * 109.47272 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47647 * 299.99993 * 13 11 9 17 17 C 1.38388 * 110.99776 * 163.83610 * 7 6 4 18 18 N 1.32910 * 120.77672 * 123.95692 * 17 7 6 19 19 C 1.32042 * 121.19422 * 179.97438 * 18 17 7 20 20 N 1.31646 * 122.46617 * 359.97438 * 19 18 17 21 21 C 1.32888 * 120.63574 * 0.03882 * 20 19 18 22 22 C 1.40515 * 120.77399 * 303.92613 * 17 7 6 23 23 N 1.35475 * 134.69186 * 0.03349 * 22 17 7 24 24 C 1.30134 * 109.44301 * 179.97438 * 23 22 17 25 25 N 1.36317 * 109.97750 * 359.97438 * 24 23 22 26 26 C 1.46506 * 126.27633 * 179.97438 * 25 24 23 27 27 C 1.52990 * 117.50094 * 8.64573 * 26 25 24 28 28 C 1.52994 * 60.00391 * 252.51180 * 27 26 25 29 29 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46909 * 299.99770 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.99430 * 1 2 3 32 32 H 1.09001 * 109.46909 * 240.00230 * 2 1 3 33 33 H 1.08993 * 109.47533 * 120.00312 * 2 1 3 34 34 H 1.08997 * 109.47448 * 54.65496 * 6 4 3 35 35 H 1.08999 * 109.47128 * 294.65318 * 6 4 3 36 36 H 1.08995 * 109.47638 * 280.31113 * 8 7 6 37 37 H 1.09000 * 109.47141 * 40.31496 * 8 7 6 38 38 H 0.97001 * 120.00475 * 179.97438 * 12 11 9 39 39 H 1.08003 * 118.76736 * 179.97438 * 19 18 17 40 40 H 1.08001 * 125.00978 * 179.97438 * 24 23 22 41 41 H 1.08996 * 115.54592 * 154.36035 * 26 25 24 42 42 H 1.09000 * 117.50053 * 0.02562 * 27 26 25 43 43 H 1.09000 * 117.50051 * 145.01639 * 27 26 25 44 44 H 1.09000 * 117.50136 * 252.51121 * 28 27 26 45 45 H 1.08998 * 117.49982 * 107.48407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 7 5.3822 2.8629 0.1274 8 6 5.7714 2.4650 1.4868 9 6 7.1821 1.9351 1.4706 10 1 7.7617 1.9703 0.5600 11 6 7.7329 1.4055 2.6184 12 7 7.0270 1.3623 3.7271 13 14 9.4817 0.7493 2.5983 14 1 10.4158 1.8411 2.2229 15 1 9.8344 0.2389 3.9475 16 1 9.5855 -0.3531 1.6089 17 6 5.9730 4.0633 -0.2262 18 7 6.7746 4.7020 0.6199 19 6 7.3430 5.8475 0.2908 20 7 7.1539 6.4198 -0.8796 21 6 6.3682 5.8551 -1.7904 22 6 5.7398 4.6350 -1.4884 23 7 5.0076 4.2840 -2.5729 24 6 5.1427 5.1889 -3.4982 25 7 5.9720 6.1796 -3.0633 26 6 6.3691 7.3711 -3.8175 27 6 5.6548 7.6383 -5.1438 28 6 7.1068 7.1564 -5.1406 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5105 3.5007 0.8370 35 1 3.6631 3.4367 -0.9352 36 1 5.7156 3.3293 2.1485 37 1 5.0958 1.6885 1.8457 38 1 7.4143 0.9894 4.5344 39 1 7.9872 6.3332 1.0089 40 1 4.6680 5.1594 -4.4678 41 1 6.6546 8.2344 -3.2164 42 1 4.8890 6.9278 -5.4551 43 1 5.4699 8.6776 -5.4155 44 1 7.8774 7.8786 -5.4102 45 1 7.2967 6.1286 -5.4498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:24 Heat of formation + Delta-G solvation = 78.068673 kcal Electronic energy + Delta-G solvation = -30443.116140 eV Core-core repulsion = 26271.425807 eV Total energy + Delta-G solvation = -4171.690333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.41212 -40.13147 -39.30967 -37.33271 -37.12483 -35.83057 -32.88237 -32.38897 -31.68446 -31.43869 -29.59475 -28.36861 -26.21752 -24.10403 -23.84428 -23.25799 -22.86107 -22.82577 -21.66953 -20.64655 -19.58948 -18.30668 -17.70296 -17.29958 -16.73480 -16.32413 -16.17872 -15.81351 -15.69765 -15.44720 -15.01761 -14.46666 -14.31994 -14.15522 -13.74376 -13.58829 -13.42434 -13.04378 -12.93424 -12.67988 -12.37309 -12.05393 -12.03330 -11.74578 -11.67454 -11.44982 -11.33803 -11.17493 -11.08471 -10.78836 -10.64390 -10.54349 -10.24478 -10.02323 -9.97244 -9.81275 -9.33091 -8.99466 -8.85448 -8.56071 -8.24982 -7.47064 -5.89211 -3.85350 1.00337 1.65861 2.21061 2.74206 2.76226 2.84443 3.35544 3.44647 3.46404 3.51215 3.97400 4.08768 4.15603 4.24345 4.37764 4.40425 4.50419 4.59748 4.77513 4.92735 4.99447 5.02558 5.12745 5.13734 5.25954 5.33953 5.39513 5.43231 5.48163 5.50608 5.57226 5.62201 5.77081 5.83780 5.86304 5.98523 6.12687 6.56924 6.76456 6.81643 6.90363 7.20590 7.38999 7.69225 7.77117 7.96268 8.10656 8.28081 8.44472 8.72738 9.11899 9.73228 11.22934 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007427 B = 0.004447 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3769.192575 B = 6295.357449 C = 9382.568172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.461 3.539 5 O -0.464 6.464 6 C 0.073 3.927 7 N -0.445 5.445 8 C 0.194 3.806 9 C -0.476 4.476 10 H 0.055 0.945 11 C 0.059 3.941 12 N -0.902 5.902 13 Si 0.897 3.103 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.451 3.549 18 N -0.524 5.524 19 C 0.346 3.654 20 N -0.559 5.559 21 C 0.294 3.706 22 C -0.084 4.084 23 N -0.452 5.452 24 C 0.238 3.762 25 N -0.452 5.452 26 C 0.072 3.928 27 C -0.174 4.174 28 C -0.180 4.180 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.029 0.971 37 H 0.042 0.958 38 H 0.260 0.740 39 H 0.201 0.799 40 H 0.215 0.785 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 11.383 -15.394 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.347 6.347 6 C -0.054 4.054 7 N -0.160 5.160 8 C 0.072 3.928 9 C -0.515 4.515 10 H 0.073 0.927 11 C -0.142 4.142 12 N -0.543 5.543 13 Si 0.725 3.275 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.205 1.205 17 C 0.201 3.799 18 N -0.246 5.246 19 C 0.055 3.945 20 N -0.283 5.283 21 C 0.053 3.947 22 C -0.210 4.210 23 N -0.171 5.171 24 C -0.048 4.048 25 N -0.146 5.146 26 C -0.032 4.032 27 C -0.212 4.212 28 C -0.219 4.219 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.217 0.783 40 H 0.232 0.768 41 H 0.161 0.839 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.329 10.331 -14.949 20.426 hybrid contribution 0.982 0.132 -0.199 1.010 sum -8.347 10.463 -15.148 20.214 Atomic orbital electron populations 1.21785 0.93005 1.02622 1.03278 1.22943 0.94865 0.80640 1.02724 1.86440 1.24866 1.32092 1.85082 1.23252 0.80353 0.92552 0.73810 1.90764 1.59746 1.42164 1.42046 1.21579 0.86616 0.91773 1.05478 1.58238 1.05011 1.20046 1.32660 1.20080 0.98200 0.96249 0.78250 1.20705 0.96797 1.38075 0.95881 0.92711 1.24798 0.97797 0.96225 0.95330 1.69916 1.36879 1.46819 1.00648 0.86577 0.84918 0.79202 0.76773 1.20379 1.21405 1.20458 1.19340 0.89424 0.85260 0.85858 1.68714 1.13526 1.09264 1.33116 1.24708 0.92780 0.87594 0.89424 1.67272 1.20612 1.37492 1.02909 1.18695 0.95986 0.92814 0.87211 1.19859 1.06395 0.98062 0.96645 1.70268 1.21828 1.25362 0.99604 1.25192 0.94680 0.84333 1.00551 1.44353 1.39530 1.19844 1.10826 1.21902 1.05199 0.88464 0.87648 1.23420 0.96104 1.03857 0.97791 1.23509 0.95445 1.03822 0.99111 0.90524 0.91570 0.91688 0.91394 0.91155 0.89833 0.85583 0.95339 0.94007 0.93044 0.78280 0.76843 0.83896 0.87730 0.86938 0.87180 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.06 10.22 -39.27 -0.40 -6.46 16 4 C 0.46 9.15 7.37 36.01 0.27 9.42 16 5 O -0.46 -11.05 15.11 -18.75 -0.28 -11.33 16 6 C 0.07 1.40 5.43 -4.97 -0.03 1.37 16 7 N -0.44 -10.36 4.06 -175.54 -0.71 -11.07 16 8 C 0.19 5.23 3.95 -4.98 -0.02 5.21 16 9 C -0.48 -14.07 8.38 -34.44 -0.29 -14.36 16 10 H 0.05 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 13 Si 0.90 23.00 29.54 -169.99 -5.02 17.98 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 C 0.45 9.86 6.14 -154.66 -0.95 8.91 16 18 N -0.52 -11.46 8.08 -13.61 -0.11 -11.57 16 19 C 0.35 6.26 12.25 -92.07 -1.13 5.13 16 20 N -0.56 -9.75 10.47 -13.90 -0.15 -9.89 16 21 C 0.29 5.07 8.05 -155.80 -1.25 3.82 16 22 C -0.08 -1.61 6.45 -84.54 -0.55 -2.16 16 23 N -0.45 -7.62 9.90 -11.85 -0.12 -7.73 16 24 C 0.24 2.95 11.85 -89.50 -1.06 1.89 16 25 N -0.45 -5.90 3.12 -110.52 -0.34 -6.25 16 26 C 0.07 0.65 6.89 -67.93 -0.47 0.18 16 27 C -0.17 -0.95 9.98 -26.74 -0.27 -1.22 16 28 C -0.18 -1.24 10.40 -26.73 -0.28 -1.52 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 34 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 35 H 0.13 2.22 5.91 -51.93 -0.31 1.91 16 36 H 0.03 0.80 7.28 -51.93 -0.38 0.42 16 37 H 0.04 1.21 6.60 -51.93 -0.34 0.87 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.20 2.87 8.06 -52.48 -0.42 2.44 16 40 H 0.22 1.55 6.99 -52.49 -0.37 1.18 16 41 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 0.47 6.82 -51.93 -0.35 0.12 16 43 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -37.59 383.28 -12.07 -49.66 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.94 Total: -0.69 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: -5.51 Total: 18.33 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -0.69 Total: -73.25 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.68 Total: -17.80 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.59 -12.07 -49.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.727 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds