Wall clock time and date at job start Wed Apr 1 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46862 * 2 1 4 4 C 1.34234 * 116.99719 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99749 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.46799 * 174.65246 * 6 4 3 8 8 C 1.46896 * 111.00022 * 287.78390 * 7 6 4 9 9 C 1.50700 * 109.46972 * 160.31011 * 8 7 6 10 10 H 1.08001 * 120.00131 * 4.86924 * 9 8 7 11 11 C 1.37885 * 119.99963 * 184.86211 * 9 8 7 12 12 N 1.31505 * 120.00085 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99714 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47440 * 60.00452 * 13 11 9 15 15 H 1.48504 * 109.47272 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47647 * 299.99993 * 13 11 9 17 17 C 1.38388 * 110.99776 * 163.83610 * 7 6 4 18 18 N 1.32910 * 120.77672 * 123.95692 * 17 7 6 19 19 C 1.32042 * 121.19422 * 179.97438 * 18 17 7 20 20 N 1.31646 * 122.46617 * 359.97438 * 19 18 17 21 21 C 1.32888 * 120.63574 * 0.03882 * 20 19 18 22 22 C 1.40515 * 120.77399 * 303.92613 * 17 7 6 23 23 N 1.35475 * 134.69186 * 0.03349 * 22 17 7 24 24 C 1.30134 * 109.44301 * 179.97438 * 23 22 17 25 25 N 1.36317 * 109.97750 * 359.97438 * 24 23 22 26 26 C 1.46506 * 126.27633 * 179.97438 * 25 24 23 27 27 C 1.52990 * 117.50094 * 8.64573 * 26 25 24 28 28 C 1.52994 * 60.00391 * 252.51180 * 27 26 25 29 29 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46909 * 299.99770 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.99430 * 1 2 3 32 32 H 1.09001 * 109.46909 * 240.00230 * 2 1 3 33 33 H 1.08993 * 109.47533 * 120.00312 * 2 1 3 34 34 H 1.08997 * 109.47448 * 54.65496 * 6 4 3 35 35 H 1.08999 * 109.47128 * 294.65318 * 6 4 3 36 36 H 1.08995 * 109.47638 * 280.31113 * 8 7 6 37 37 H 1.09000 * 109.47141 * 40.31496 * 8 7 6 38 38 H 0.97001 * 120.00475 * 179.97438 * 12 11 9 39 39 H 1.08003 * 118.76736 * 179.97438 * 19 18 17 40 40 H 1.08001 * 125.00978 * 179.97438 * 24 23 22 41 41 H 1.08996 * 115.54592 * 154.36035 * 26 25 24 42 42 H 1.09000 * 117.50053 * 0.02562 * 27 26 25 43 43 H 1.09000 * 117.50051 * 145.01639 * 27 26 25 44 44 H 1.09000 * 117.50136 * 252.51121 * 28 27 26 45 45 H 1.08998 * 117.49982 * 107.48407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 7 5.3822 2.8629 0.1274 8 6 5.7714 2.4650 1.4868 9 6 7.1821 1.9351 1.4706 10 1 7.7617 1.9703 0.5600 11 6 7.7329 1.4055 2.6184 12 7 7.0270 1.3623 3.7271 13 14 9.4817 0.7493 2.5983 14 1 10.4158 1.8411 2.2229 15 1 9.8344 0.2389 3.9475 16 1 9.5855 -0.3531 1.6089 17 6 5.9730 4.0633 -0.2262 18 7 6.7746 4.7020 0.6199 19 6 7.3430 5.8475 0.2908 20 7 7.1539 6.4198 -0.8796 21 6 6.3682 5.8551 -1.7904 22 6 5.7398 4.6350 -1.4884 23 7 5.0076 4.2840 -2.5729 24 6 5.1427 5.1889 -3.4982 25 7 5.9720 6.1796 -3.0633 26 6 6.3691 7.3711 -3.8175 27 6 5.6548 7.6383 -5.1438 28 6 7.1068 7.1564 -5.1406 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5105 3.5007 0.8370 35 1 3.6631 3.4367 -0.9352 36 1 5.7156 3.3293 2.1485 37 1 5.0958 1.6885 1.8457 38 1 7.4143 0.9894 4.5344 39 1 7.9872 6.3332 1.0089 40 1 4.6680 5.1594 -4.4678 41 1 6.6546 8.2344 -3.2164 42 1 4.8890 6.9278 -5.4551 43 1 5.4699 8.6776 -5.4155 44 1 7.8774 7.8786 -5.4102 45 1 7.2967 6.1286 -5.4498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157162268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:23 Heat of formation + Delta-G solvation = 56.023589 kcal Electronic energy + Delta-G solvation = -30444.072087 eV Core-core repulsion = 26271.425807 eV Total energy + Delta-G solvation = -4172.646280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65342 -41.65947 -40.65370 -38.69034 -38.05094 -37.39247 -34.83660 -33.98780 -32.82634 -32.58636 -30.99377 -30.19730 -27.95643 -25.53223 -25.22300 -24.34006 -24.05185 -23.50680 -23.15166 -22.07597 -20.83565 -19.41026 -19.18981 -18.81312 -18.49314 -17.75821 -17.58104 -17.23747 -16.99261 -16.80659 -16.47895 -15.84981 -15.66803 -15.52703 -15.10796 -14.92710 -14.67885 -14.31507 -14.16831 -13.96883 -13.73524 -13.58449 -13.35598 -12.94482 -12.85817 -12.76153 -12.60190 -12.54894 -12.48618 -12.44840 -12.12601 -11.85253 -11.64977 -11.53640 -11.49940 -11.41699 -11.30307 -10.60579 -10.33488 -10.09632 -10.01551 -9.01802 -8.15932 -6.19507 -0.35123 0.25000 1.15681 1.18978 1.35932 1.40413 1.41957 1.48009 1.66514 2.37683 2.56840 2.73098 2.83941 2.97207 3.17702 3.19223 3.38863 3.50764 3.64922 3.79439 3.86801 3.91058 3.93949 3.99998 4.03007 4.11646 4.15173 4.36152 4.55120 4.59230 4.73249 4.81421 4.91407 4.92413 4.94598 5.01412 5.13041 5.14933 5.19946 5.34455 5.41709 5.46180 5.75490 5.86747 6.02961 6.18234 6.34290 6.64726 6.76181 6.81485 7.27499 7.42743 8.96131 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007427 B = 0.004447 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3769.192575 B = 6295.357449 C = 9382.568172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.512 6.512 6 C 0.075 3.925 7 N -0.463 5.463 8 C 0.221 3.779 9 C -0.487 4.487 10 H 0.036 0.964 11 C 0.010 3.990 12 N -0.931 5.931 13 Si 0.960 3.040 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.279 1.279 17 C 0.422 3.578 18 N -0.561 5.561 19 C 0.333 3.667 20 N -0.547 5.547 21 C 0.279 3.721 22 C -0.093 4.093 23 N -0.495 5.495 24 C 0.273 3.727 25 N -0.443 5.443 26 C 0.032 3.968 27 C -0.139 4.139 28 C -0.176 4.176 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.008 0.992 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.228 0.772 40 H 0.271 0.729 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.123 0.877 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 13.022 -18.549 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.399 6.399 6 C -0.052 4.052 7 N -0.178 5.178 8 C 0.097 3.903 9 C -0.526 4.526 10 H 0.054 0.946 11 C -0.188 4.188 12 N -0.572 5.572 13 Si 0.785 3.215 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.205 1.205 17 C 0.173 3.827 18 N -0.284 5.284 19 C 0.043 3.957 20 N -0.270 5.270 21 C 0.036 3.964 22 C -0.218 4.218 23 N -0.214 5.214 24 C -0.013 4.013 25 N -0.135 5.135 26 C -0.070 4.070 27 C -0.177 4.177 28 C -0.214 4.214 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.162 0.838 36 H 0.026 0.974 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.244 0.756 40 H 0.287 0.713 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.141 0.859 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.077 12.038 -18.148 23.996 hybrid contribution 1.111 -0.228 0.561 1.266 sum -8.966 11.810 -17.588 23.004 Atomic orbital electron populations 1.21808 0.89320 1.04549 1.03973 1.23336 0.97647 0.79042 1.02229 1.86445 1.22787 1.34007 1.84204 1.23397 0.81089 0.92213 0.72437 1.90734 1.61058 1.43529 1.44547 1.21668 0.85026 0.91779 1.06724 1.58196 1.07081 1.22144 1.30404 1.19478 0.96325 0.94163 0.80358 1.20843 0.97994 1.38451 0.95289 0.94591 1.25608 1.01892 0.96386 0.94903 1.70023 1.38582 1.47449 1.01164 0.85594 0.80097 0.78570 0.77231 1.19520 1.19978 1.20495 1.19408 0.90391 0.85559 0.87328 1.68605 1.14334 1.10838 1.34626 1.25212 0.93205 0.86935 0.90397 1.67347 1.20050 1.36926 1.02688 1.19012 0.95955 0.92550 0.88893 1.19815 1.07057 0.98563 0.96382 1.70259 1.23508 1.27641 0.99978 1.26337 0.91843 0.82125 1.00959 1.44685 1.38517 1.20948 1.09314 1.22289 1.09104 0.87031 0.88619 1.23634 0.95346 1.05703 0.92976 1.23588 0.97217 1.04026 0.96598 0.87937 0.91281 0.90537 0.91289 0.92457 0.88770 0.83763 0.97385 0.97019 0.92757 0.75557 0.71325 0.84300 0.85914 0.84635 0.85867 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.29 71.98 0.74 -1.74 16 2 C 0.05 1.41 6.19 71.98 0.45 1.85 16 3 O -0.36 -12.02 10.22 -51.46 -0.53 -12.54 16 4 C 0.47 19.42 7.37 71.24 0.53 19.95 16 5 O -0.51 -25.81 15.11 21.97 0.33 -25.48 16 6 C 0.07 3.01 5.43 85.56 0.46 3.47 16 7 N -0.46 -22.80 4.06 -709.27 -2.88 -25.68 16 8 C 0.22 12.67 3.95 85.56 0.34 13.00 16 9 C -0.49 -30.27 8.38 25.60 0.21 -30.06 16 10 H 0.04 2.32 7.81 -2.91 -0.02 2.29 16 11 C 0.01 0.59 5.46 84.66 0.46 1.05 16 12 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 13 Si 0.96 48.35 29.54 68.60 2.03 50.38 16 14 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 17 C 0.42 19.30 6.14 133.46 0.82 20.12 16 18 N -0.56 -25.79 8.08 -196.96 -1.59 -27.39 16 19 C 0.33 12.40 12.25 180.85 2.22 14.62 16 20 N -0.55 -19.09 10.47 -197.89 -2.07 -21.16 16 21 C 0.28 9.49 8.05 133.86 1.08 10.56 16 22 C -0.09 -3.62 6.45 39.69 0.26 -3.36 16 23 N -0.49 -16.11 9.90 -191.40 -1.89 -18.01 16 24 C 0.27 5.89 11.85 179.96 2.13 8.02 16 25 N -0.44 -10.48 3.12 -503.56 -1.57 -12.06 16 26 C 0.03 0.47 6.89 44.99 0.31 0.78 16 27 C -0.14 -0.80 9.98 30.59 0.31 -0.50 16 28 C -0.18 -1.74 10.40 30.59 0.32 -1.42 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 33 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 34 H 0.09 3.50 8.05 -2.39 -0.02 3.48 16 35 H 0.14 5.21 5.91 -2.39 -0.01 5.20 16 36 H 0.01 0.50 7.28 -2.39 -0.02 0.49 16 37 H 0.01 0.73 6.60 -2.39 -0.02 0.72 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.23 6.66 8.06 -2.91 -0.02 6.64 16 40 H 0.27 2.35 6.99 -2.91 -0.02 2.33 16 41 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.12 0.31 6.82 -2.39 -0.02 0.29 16 43 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -87.96 383.28 3.76 -84.20 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.03 Total: 9.77 kcal Atomic # 6 Polarization: 45.72 SS G_CDS: 10.63 Total: 56.35 kcal Atomic # 7 Polarization: -152.95 SS G_CDS: -9.72 Total: -162.67 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.19 Total: -38.02 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -87.96 3.76 -84.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.221 kcal (2) G-P(sol) polarization free energy of solvation -87.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds