Wall clock time and date at job start Wed Apr 1 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47112 * 2 1 4 4 C 1.37525 * 119.78823 * 269.97941 * 3 2 1 5 5 N 1.37393 * 120.39970 * 0.03803 * 4 3 2 6 6 C 1.38174 * 119.20124 * 180.02562 * 4 3 2 7 7 N 1.40706 * 120.59258 * 180.02562 * 6 4 3 8 8 C 1.38006 * 120.00232 * 119.21362 * 7 6 4 9 9 C 1.39844 * 119.44176 * 185.13120 * 8 7 6 10 10 C 1.36481 * 119.48691 * 179.76466 * 9 8 7 11 11 C 1.41355 * 118.41818 * 0.50058 * 10 9 8 12 12 C 1.41132 * 120.56143 * 179.77002 * 11 10 9 13 13 H 1.08001 * 120.00175 * 151.41501 * 12 11 10 14 14 C 1.39761 * 119.99704 * 331.41193 * 12 11 10 15 15 N 1.30967 * 120.00174 * 349.20301 * 14 12 11 16 16 Si 1.86795 * 120.00079 * 169.20161 * 14 12 11 17 17 H 1.48506 * 109.47145 * 89.99945 * 16 14 12 18 18 H 1.48498 * 109.47405 * 209.99727 * 16 14 12 19 19 H 1.48504 * 109.47233 * 330.00161 * 16 14 12 20 20 C 1.40813 * 118.88060 * 359.74157 * 11 10 9 21 21 N 1.31406 * 120.37440 * 0.02562 * 20 11 10 22 22 C 1.40888 * 118.81873 * 359.71581 * 6 4 3 23 23 O 1.21931 * 120.23459 * 180.28797 * 22 6 4 24 24 N 1.34738 * 119.53591 * 0.55049 * 22 6 4 25 25 C 1.46500 * 119.61667 * 179.74340 * 24 22 6 26 26 C 1.53005 * 109.46852 * 269.72494 * 25 24 22 27 27 C 1.34468 * 120.77067 * 359.45798 * 24 22 6 28 28 O 1.21607 * 119.37701 * 180.27722 * 27 24 22 29 29 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47568 * 300.00207 * 1 2 3 31 31 H 1.09001 * 109.47401 * 60.00730 * 1 2 3 32 32 H 1.08994 * 109.47568 * 239.99793 * 2 1 3 33 33 H 1.09001 * 109.47401 * 119.99270 * 2 1 3 34 34 H 0.96994 * 119.99999 * 0.02562 * 5 4 3 35 35 H 0.97007 * 119.99656 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99549 * 299.22042 * 7 6 4 37 37 H 1.07999 * 120.25067 * 359.97438 * 9 8 7 38 38 H 1.08004 * 120.78649 * 180.24735 * 10 9 8 39 39 H 0.96997 * 120.00284 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.81039 * 179.97438 * 20 11 10 41 41 H 1.09001 * 109.47205 * 149.72170 * 25 24 22 42 42 H 1.09001 * 109.46938 * 29.72387 * 25 24 22 43 43 H 1.08995 * 109.46887 * 299.99851 * 26 25 24 44 44 H 1.09005 * 109.46873 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46966 * 59.99945 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2464 2.0252 -1.1935 5 7 2.0184 1.3814 -2.3856 6 6 2.7075 3.3277 -1.1794 7 7 2.9502 4.0145 -2.3832 8 6 2.2526 5.1699 -2.6713 9 6 2.4235 5.7838 -3.9161 10 6 1.7303 6.9237 -4.2038 11 6 0.8652 7.4518 -3.2184 12 6 0.1304 8.6310 -3.4661 13 1 -0.8188 8.7889 -2.9756 14 6 0.6310 9.5945 -4.3461 15 7 1.8652 9.5103 -4.7761 16 14 -0.4601 11.0023 -4.9089 17 1 -0.3179 12.1445 -3.9705 18 1 -0.0545 11.4284 -6.2723 19 1 -1.8754 10.5532 -4.9311 20 6 0.7485 6.7811 -1.9858 21 7 1.4343 5.6834 -1.7591 22 6 2.9240 3.9581 0.0619 23 8 3.3254 5.1086 0.1045 24 7 2.6893 3.2789 1.2016 25 6 2.9192 3.9307 2.4933 26 6 4.3592 3.6768 2.9436 27 6 2.2411 2.0115 1.1674 28 8 2.0329 1.4240 2.2116 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6942 0.4672 -2.3888 35 1 2.1817 1.8411 -3.2241 36 1 3.6079 3.6759 -3.0106 37 1 3.0962 5.3572 -4.6453 38 1 1.8433 7.4130 -5.1600 39 1 2.2128 10.1791 -5.3866 40 1 0.0921 7.1716 -1.2221 41 1 2.2300 3.5240 3.2334 42 1 2.7535 5.0035 2.3935 43 1 4.5249 2.6041 3.0433 44 1 4.5304 4.1622 3.9044 45 1 5.0484 4.0836 2.2035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164458110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:52 Heat of formation + Delta-G solvation = 16.434093 kcal Electronic energy + Delta-G solvation = -30978.050241 eV Core-core repulsion = 26803.687232 eV Total energy + Delta-G solvation = -4174.363009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13890 -38.95138 -38.58983 -37.87159 -35.23096 -35.04384 -33.91066 -33.18741 -32.42534 -30.48982 -30.25683 -29.46926 -27.57533 -24.75206 -24.56492 -24.15231 -22.62456 -22.04077 -21.47039 -20.77450 -19.67171 -17.81596 -17.38470 -17.14382 -16.93458 -16.51237 -16.27534 -15.82860 -15.39628 -15.19557 -14.85336 -14.29309 -14.12022 -13.92013 -13.82490 -13.66265 -13.38004 -13.30493 -12.78178 -12.62634 -12.48485 -12.33336 -12.26282 -12.04154 -11.72101 -11.54134 -11.45856 -11.22643 -11.01703 -10.97353 -10.75418 -10.55683 -9.91390 -9.86943 -9.70820 -9.40381 -9.33846 -8.93644 -8.14159 -7.86588 -7.49871 -6.65798 -6.47883 -4.14912 1.54228 1.87260 2.30889 2.80699 3.07608 3.12626 3.13771 3.17736 3.36869 3.50257 3.90092 4.02495 4.09670 4.49323 4.71693 4.80858 4.86721 4.98196 5.12666 5.26971 5.31746 5.36676 5.43400 5.61562 5.70334 5.78441 5.84443 5.93010 5.95057 6.08731 6.13002 6.19322 6.30013 6.52338 6.73346 6.89777 6.97443 7.24642 7.26713 7.41407 7.49872 7.62704 7.83371 7.88825 7.97887 8.25938 8.46909 8.58231 8.69245 8.93560 8.96403 9.87145 10.34917 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003007 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.597864 B = 9309.678798 C =10007.649793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.539 5.539 4 C 0.422 3.578 5 N -0.841 5.841 6 C -0.074 4.074 7 N -0.649 5.649 8 C 0.280 3.720 9 C -0.199 4.199 10 C -0.090 4.090 11 C 0.033 3.967 12 C -0.457 4.457 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.814 5.814 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.017 3.983 21 N -0.492 5.492 22 C 0.557 3.443 23 O -0.488 6.488 24 N -0.556 5.556 25 C 0.110 3.890 26 C -0.162 4.162 27 C 0.708 3.292 28 O -0.555 6.555 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.399 0.601 35 H 0.422 0.578 36 H 0.396 0.604 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.277 0.723 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -19.315 4.836 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.267 5.267 4 C 0.209 3.791 5 N -0.386 5.386 6 C -0.185 4.185 7 N -0.284 5.284 8 C 0.048 3.952 9 C -0.223 4.223 10 C -0.117 4.117 11 C 0.028 3.972 12 C -0.489 4.489 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.442 5.442 16 Si 0.734 3.266 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.142 4.142 21 N -0.205 5.205 22 C 0.353 3.647 23 O -0.360 6.360 24 N -0.302 5.302 25 C -0.011 4.011 26 C -0.220 4.220 27 C 0.411 3.589 28 O -0.430 6.430 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.229 0.771 35 H 0.256 0.744 36 H 0.232 0.768 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.642 -19.229 6.319 20.307 hybrid contribution -0.115 0.887 -1.806 2.016 sum 1.527 -18.343 4.512 18.951 Atomic orbital electron populations 1.22187 0.94193 1.03081 1.03622 1.21713 0.95770 0.79318 1.04601 1.44539 1.63510 1.15307 1.03386 1.18007 0.90367 0.90889 0.79877 1.41923 1.74237 1.17326 1.05149 1.16499 1.23351 0.90250 0.88430 1.40262 1.44285 1.26079 1.17737 1.17681 0.96700 0.89927 0.90858 1.20685 1.05447 0.99971 0.96225 1.21237 0.97620 0.93090 0.99771 1.18378 0.93778 0.93759 0.91310 1.19273 1.05538 1.01359 1.22740 0.90656 1.25806 0.94782 0.99078 0.94650 1.69819 1.13746 1.33803 1.26786 0.86298 0.81069 0.80851 0.78334 1.19674 1.20369 1.18721 1.22247 1.02199 0.94145 0.95593 1.66584 1.08451 1.13696 1.31816 1.16926 0.78225 0.86864 0.82721 1.90910 1.43579 1.15593 1.85966 1.46495 1.60965 1.12077 1.10622 1.21583 0.97947 0.99322 0.82248 1.22048 0.96175 1.01984 1.01801 1.15537 0.78503 0.81788 0.83053 1.90956 1.57313 1.65277 1.29495 0.90519 0.91287 0.91907 0.89603 0.87753 0.77111 0.74404 0.76793 0.88690 0.85457 0.91220 0.85954 0.89085 0.88293 0.92487 0.91003 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.11 0.83 5.63 -4.04 -0.02 0.81 16 3 N -0.54 -6.40 2.63 -120.34 -0.32 -6.71 16 4 C 0.42 5.31 7.54 -152.33 -1.15 4.16 16 5 N -0.84 -6.99 8.85 31.56 0.28 -6.71 16 6 C -0.07 -1.27 5.81 -82.80 -0.48 -1.75 16 7 N -0.65 -11.57 4.49 -9.43 -0.04 -11.61 16 8 C 0.28 6.34 7.02 -155.32 -1.09 5.25 16 9 C -0.20 -4.55 9.85 -39.62 -0.39 -4.94 16 10 C -0.09 -2.33 8.70 -39.03 -0.34 -2.67 16 11 C 0.03 0.88 5.56 -106.64 -0.59 0.29 16 12 C -0.46 -12.30 9.06 -37.92 -0.34 -12.64 16 13 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 14 C 0.07 1.83 5.27 -17.35 -0.09 1.74 16 15 N -0.81 -21.48 10.86 55.54 0.60 -20.87 16 16 Si 0.91 19.13 29.57 -169.99 -5.03 14.11 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 20 C 0.02 0.46 10.97 -16.76 -0.18 0.27 16 21 N -0.49 -12.38 7.98 -11.82 -0.09 -12.47 16 22 C 0.56 10.74 6.86 -15.27 -0.10 10.63 16 23 O -0.49 -11.39 14.93 4.98 0.07 -11.32 16 24 N -0.56 -9.08 2.55 -124.28 -0.32 -9.40 16 25 C 0.11 1.59 5.79 -4.04 -0.02 1.57 16 26 C -0.16 -2.00 10.24 37.16 0.38 -1.62 16 27 C 0.71 10.49 8.11 -87.42 -0.71 9.78 16 28 O -0.56 -8.66 15.30 5.27 0.08 -8.57 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.39 6.43 -51.93 -0.33 0.05 16 33 H 0.10 0.82 7.37 -51.93 -0.38 0.44 16 34 H 0.40 2.07 6.74 -40.82 -0.27 1.80 16 35 H 0.42 3.50 8.04 -40.82 -0.33 3.17 16 36 H 0.40 5.77 8.74 -40.82 -0.36 5.41 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.13 3.35 6.30 -52.48 -0.33 3.02 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.12 3.07 8.06 -52.48 -0.42 2.65 16 41 H 0.09 1.20 7.36 -51.93 -0.38 0.82 16 42 H 0.10 1.54 7.39 -51.93 -0.38 1.15 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -34.92 374.63 -9.58 -44.50 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.70 Total: 13.46 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -4.76 Total: 9.97 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: 0.11 Total: -67.79 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.89 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.92 -9.58 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.933 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds