Wall clock time and date at job start Wed Apr 1 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47112 * 2 1 4 4 C 1.37525 * 119.78823 * 269.97941 * 3 2 1 5 5 N 1.37393 * 120.39970 * 0.03803 * 4 3 2 6 6 C 1.38174 * 119.20124 * 180.02562 * 4 3 2 7 7 N 1.40706 * 120.59258 * 180.02562 * 6 4 3 8 8 C 1.38006 * 120.00232 * 119.21362 * 7 6 4 9 9 C 1.39844 * 119.44176 * 185.13120 * 8 7 6 10 10 C 1.36481 * 119.48691 * 179.76466 * 9 8 7 11 11 C 1.41355 * 118.41818 * 0.50058 * 10 9 8 12 12 C 1.41132 * 120.56143 * 179.77002 * 11 10 9 13 13 H 1.08001 * 120.00175 * 151.41501 * 12 11 10 14 14 C 1.39761 * 119.99704 * 331.41193 * 12 11 10 15 15 N 1.30967 * 120.00174 * 349.20301 * 14 12 11 16 16 Si 1.86795 * 120.00079 * 169.20161 * 14 12 11 17 17 H 1.48506 * 109.47145 * 89.99945 * 16 14 12 18 18 H 1.48498 * 109.47405 * 209.99727 * 16 14 12 19 19 H 1.48504 * 109.47233 * 330.00161 * 16 14 12 20 20 C 1.40813 * 118.88060 * 359.74157 * 11 10 9 21 21 N 1.31406 * 120.37440 * 0.02562 * 20 11 10 22 22 C 1.40888 * 118.81873 * 359.71581 * 6 4 3 23 23 O 1.21931 * 120.23459 * 180.28797 * 22 6 4 24 24 N 1.34738 * 119.53591 * 0.55049 * 22 6 4 25 25 C 1.46500 * 119.61667 * 179.74340 * 24 22 6 26 26 C 1.53005 * 109.46852 * 269.72494 * 25 24 22 27 27 C 1.34468 * 120.77067 * 359.45798 * 24 22 6 28 28 O 1.21607 * 119.37701 * 180.27722 * 27 24 22 29 29 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47568 * 300.00207 * 1 2 3 31 31 H 1.09001 * 109.47401 * 60.00730 * 1 2 3 32 32 H 1.08994 * 109.47568 * 239.99793 * 2 1 3 33 33 H 1.09001 * 109.47401 * 119.99270 * 2 1 3 34 34 H 0.96994 * 119.99999 * 0.02562 * 5 4 3 35 35 H 0.97007 * 119.99656 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99549 * 299.22042 * 7 6 4 37 37 H 1.07999 * 120.25067 * 359.97438 * 9 8 7 38 38 H 1.08004 * 120.78649 * 180.24735 * 10 9 8 39 39 H 0.96997 * 120.00284 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.81039 * 179.97438 * 20 11 10 41 41 H 1.09001 * 109.47205 * 149.72170 * 25 24 22 42 42 H 1.09001 * 109.46938 * 29.72387 * 25 24 22 43 43 H 1.08995 * 109.46887 * 299.99851 * 26 25 24 44 44 H 1.09005 * 109.46873 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46966 * 59.99945 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2464 2.0252 -1.1935 5 7 2.0184 1.3814 -2.3856 6 6 2.7075 3.3277 -1.1794 7 7 2.9502 4.0145 -2.3832 8 6 2.2526 5.1699 -2.6713 9 6 2.4235 5.7838 -3.9161 10 6 1.7303 6.9237 -4.2038 11 6 0.8652 7.4518 -3.2184 12 6 0.1304 8.6310 -3.4661 13 1 -0.8188 8.7889 -2.9756 14 6 0.6310 9.5945 -4.3461 15 7 1.8652 9.5103 -4.7761 16 14 -0.4601 11.0023 -4.9089 17 1 -0.3179 12.1445 -3.9705 18 1 -0.0545 11.4284 -6.2723 19 1 -1.8754 10.5532 -4.9311 20 6 0.7485 6.7811 -1.9858 21 7 1.4343 5.6834 -1.7591 22 6 2.9240 3.9581 0.0619 23 8 3.3254 5.1086 0.1045 24 7 2.6893 3.2789 1.2016 25 6 2.9192 3.9307 2.4933 26 6 4.3592 3.6768 2.9436 27 6 2.2411 2.0115 1.1674 28 8 2.0329 1.4240 2.2116 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6942 0.4672 -2.3888 35 1 2.1817 1.8411 -3.2241 36 1 3.6079 3.6759 -3.0106 37 1 3.0962 5.3572 -4.6453 38 1 1.8433 7.4130 -5.1600 39 1 2.2128 10.1791 -5.3866 40 1 0.0921 7.1716 -1.2221 41 1 2.2300 3.5240 3.2334 42 1 2.7535 5.0035 2.3935 43 1 4.5249 2.6041 3.0433 44 1 4.5304 4.1622 3.9044 45 1 5.0484 4.0836 2.2035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164458110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:50 Heat of formation + Delta-G solvation = -6.325499 kcal Electronic energy + Delta-G solvation = -30979.037171 eV Core-core repulsion = 26803.687232 eV Total energy + Delta-G solvation = -4175.349939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.32618 -40.49875 -39.91290 -39.28746 -36.71175 -36.33205 -35.43710 -34.51474 -33.51106 -32.39197 -31.23682 -31.16563 -28.98982 -26.58184 -25.59706 -25.22214 -24.11283 -23.24232 -23.05256 -22.41154 -20.83613 -19.14474 -18.89802 -18.58365 -18.28095 -17.81753 -17.56413 -17.09832 -16.86111 -16.51854 -16.22351 -15.61826 -15.44055 -15.32211 -15.12888 -14.81356 -14.76041 -14.59985 -14.37103 -14.18709 -13.64758 -13.58334 -13.37249 -13.25551 -13.16969 -13.06802 -12.96037 -12.75202 -12.26587 -12.17601 -12.10727 -11.93750 -11.63161 -11.46082 -11.09713 -10.91016 -10.61123 -10.54836 -10.06603 -9.75416 -8.98940 -8.50775 -8.11610 -6.12454 0.34816 0.80636 0.94007 1.07056 1.22412 1.41266 1.53975 1.59040 1.97881 2.27163 2.53699 2.57644 2.82542 2.90896 3.69710 3.86837 3.91746 4.00451 4.07019 4.17772 4.23006 4.27625 4.35360 4.48858 4.53520 4.63890 4.72524 4.78097 4.86213 4.89038 4.96139 5.02379 5.06392 5.14687 5.21897 5.24574 5.32581 5.46542 5.63543 5.96648 6.02582 6.03270 6.21603 6.50773 6.58340 6.72410 6.76837 6.89773 7.01510 7.05504 7.28751 8.04179 8.47087 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003007 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.597864 B = 9309.678798 C =10007.649793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.532 5.532 4 C 0.476 3.524 5 N -0.806 5.806 6 C -0.138 4.138 7 N -0.632 5.632 8 C 0.294 3.706 9 C -0.200 4.200 10 C -0.102 4.102 11 C 0.001 3.999 12 C -0.494 4.494 13 H 0.071 0.929 14 C 0.031 3.969 15 N -0.846 5.846 16 Si 0.984 3.016 17 H -0.269 1.269 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.005 4.005 21 N -0.508 5.508 22 C 0.549 3.451 23 O -0.551 6.551 24 N -0.561 5.561 25 C 0.105 3.895 26 C -0.150 4.150 27 C 0.704 3.296 28 O -0.562 6.562 29 H 0.108 0.892 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.421 0.579 35 H 0.430 0.570 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.284 0.716 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -22.712 3.780 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.259 5.259 4 C 0.256 3.744 5 N -0.352 5.352 6 C -0.248 4.248 7 N -0.267 5.267 8 C 0.060 3.940 9 C -0.224 4.224 10 C -0.129 4.129 11 C -0.004 4.004 12 C -0.526 4.526 13 H 0.089 0.911 14 C -0.181 4.181 15 N -0.475 5.475 16 Si 0.805 3.195 17 H -0.194 1.194 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.162 4.162 21 N -0.223 5.223 22 C 0.348 3.652 23 O -0.429 6.429 24 N -0.305 5.305 25 C -0.016 4.016 26 C -0.208 4.208 27 C 0.407 3.593 28 O -0.437 6.437 29 H 0.127 0.873 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.255 0.745 35 H 0.264 0.736 36 H 0.251 0.749 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.516 -22.767 5.260 23.416 hybrid contribution -0.061 1.528 -1.388 2.065 sum 1.455 -21.239 3.872 21.638 Atomic orbital electron populations 1.22185 0.93750 1.04744 1.02100 1.22219 0.96078 0.76846 1.07071 1.44819 1.62240 1.16604 1.02211 1.17733 0.86180 0.89222 0.81267 1.41999 1.71274 1.18130 1.03824 1.16368 1.29022 0.92203 0.87206 1.40010 1.43717 1.24584 1.18392 1.18077 0.95241 0.90607 0.90116 1.20996 1.05205 0.99039 0.97163 1.21262 0.98185 0.94182 0.99239 1.18632 0.95095 0.94592 0.92046 1.19491 1.05960 1.02502 1.24663 0.91077 1.26631 0.96006 1.01361 0.94083 1.69879 1.15135 1.35076 1.27407 0.85180 0.79030 0.77133 0.78137 1.19403 1.19056 1.18293 1.22262 1.03157 0.95239 0.95571 1.66638 1.09385 1.13681 1.32570 1.17287 0.77560 0.86411 0.83947 1.90866 1.47198 1.18067 1.86788 1.46534 1.60747 1.12706 1.10555 1.21689 0.99644 0.98245 0.82060 1.21955 0.94145 1.02356 1.02325 1.15661 0.78400 0.81305 0.83916 1.90953 1.57566 1.65252 1.29962 0.87306 0.94064 0.92157 0.85218 0.87361 0.74471 0.73552 0.74854 0.84861 0.86469 0.90575 0.86565 0.87982 0.90367 0.91941 0.88602 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 71.98 0.74 -1.15 16 2 C 0.10 1.07 5.63 86.38 0.49 1.55 16 3 N -0.53 -11.04 2.63 -653.04 -1.72 -12.76 16 4 C 0.48 10.51 7.54 131.77 0.99 11.51 16 5 N -0.81 -9.53 8.85 -54.07 -0.48 -10.01 16 6 C -0.14 -4.57 5.81 38.35 0.22 -4.34 16 7 N -0.63 -21.75 4.49 -183.74 -0.82 -22.57 16 8 C 0.29 13.35 7.02 133.44 0.94 14.29 16 9 C -0.20 -9.10 9.85 22.25 0.22 -8.88 16 10 C -0.10 -5.39 8.70 22.63 0.20 -5.19 16 11 C 0.00 0.08 5.56 -21.17 -0.12 -0.04 16 12 C -0.49 -27.88 9.06 23.35 0.21 -27.66 16 13 H 0.07 3.88 7.87 -2.91 -0.02 3.86 16 14 C 0.03 1.61 5.27 85.19 0.45 2.05 16 15 N -0.85 -45.87 10.86 21.80 0.24 -45.63 16 16 Si 0.98 39.98 29.57 68.60 2.03 42.01 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 C 0.00 -0.27 10.97 85.39 0.94 0.67 16 21 N -0.51 -26.43 7.98 -191.30 -1.53 -27.96 16 22 C 0.55 21.65 6.86 84.90 0.58 22.23 16 23 O -0.55 -27.13 14.93 -5.09 -0.08 -27.21 16 24 N -0.56 -18.53 2.55 -783.69 -2.00 -20.53 16 25 C 0.10 3.13 5.79 86.38 0.50 3.63 16 26 C -0.15 -3.72 10.24 71.98 0.74 -2.98 16 27 C 0.70 19.93 8.11 179.23 1.45 21.39 16 28 O -0.56 -16.63 15.30 -4.05 -0.06 -16.69 16 29 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.32 6.43 -2.39 -0.02 0.30 16 33 H 0.11 1.25 7.37 -2.39 -0.02 1.24 16 34 H 0.42 1.75 6.74 -92.71 -0.62 1.13 16 35 H 0.43 5.05 8.04 -92.70 -0.74 4.30 16 36 H 0.41 11.03 8.74 -92.71 -0.81 10.22 16 37 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.12 6.37 6.30 -2.91 -0.02 6.35 16 39 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 40 H 0.12 6.32 8.06 -2.91 -0.02 6.30 16 41 H 0.10 2.74 7.36 -2.39 -0.02 2.72 16 42 H 0.08 2.64 7.39 -2.39 -0.02 2.62 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -82.79 374.63 3.03 -79.76 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -1.10 Total: 34.52 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 8.55 Total: 27.07 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -6.31 Total: -139.46 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.14 Total: -43.90 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -82.79 3.03 -79.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.435 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds